mRNA_E-fasciculatus_F_contig12336.1802.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12336.1802.1
Unique NamemRNA_E-fasciculatus_F_contig12336.1802.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12336.1802.1 vs. uniprot
Match: D7FPC4_ECTSI (Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPC4_ECTSI)

HSP 1 Score: 191 bits (485), Expect = 2.440e-53
Identity = 102/117 (87.18%), Postives = 105/117 (89.74%), Query Frame = 3 
Query:  135 MASGLGGHEHGGRGGEDRVQDILSMCPAAMGSGLQVALTETEGSARLRTRAVATIKGLLQQVKANIKNPDRSLCSDLQRMAELRPKVFREPELLEAVGEVLTGKGAKTAIQSSGGRE 485
            MAS LG HE GGRG E+RVQDILSMCPA MGSGLQ AL ETE S  LRT+AV TIKGLLQQVK NIKNPDRSLCSDLQRMAELRPKVFREPELLE+VGEVLTGKGAKTAIQSSGGRE
Sbjct:    1 MASVLG-HEQGGRGSENRVQDILSMCPATMGSGLQAALNETEDSGVLRTKAVDTIKGLLQQVKENIKNPDRSLCSDLQRMAELRPKVFREPELLESVGEVLTGKGAKTAIQSSGGRE 116
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BLAST of mRNA_E-fasciculatus_F_contig12336.1802.1 vs. uniprot
Match: A0A6H5L4I3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I3_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 7.490e-24
Identity = 54/60 (90.00%), Postives = 57/60 (95.00%), Query Frame = 3 
Query:  306 LLQQVKANIKNPDRSLCSDLQRMAELRPKVFREPELLEAVGEVLTGKGAKTAIQSSGGRE 485
            L+  V ANI+NPDRSLCSDLQRMAELRPKVFREPELLEAVGEVLTGKGAKTAIQSSGG+E
Sbjct:   16 LVVAVPANIQNPDRSLCSDLQRMAELRPKVFREPELLEAVGEVLTGKGAKTAIQSSGGQE 75
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12336.1802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FPC4_ECTSI2.440e-5387.18Ubiquitin activating enzyme E1 n=1 Tax=Ectocarpus ... [more]
A0A6H5L4I3_9PHAE7.490e-2490.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12336contigE-fasciculatus_F_contig12336:432..1450 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.8
Seed ortholog evalue1.8e-46
Seed eggNOG ortholog2880.D7FPC4
Preferred nameINTS1
KEGG koko:K03178,ko:K13138
KEGG Pathwayko04120,ko05012,map04120,map05012
GOsGO:0000428,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009301,GO:0009790,GO:0009792,GO:0009892,GO:0009987,GO:0010466,GO:0010467,GO:0010605,GO:0010941,GO:0010951,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019222,GO:0019438,GO:0030162,GO:0030880,GO:0031123,GO:0031323,GO:0031324,GO:0031974,GO:0031981,GO:0032039,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034474,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0040007,GO:0042795,GO:0042981,GO:0043009,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043154,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043281,GO:0043628,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045861,GO:0046483,GO:0048519,GO:0048523,GO:0048589,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051171,GO:0051172,GO:0051246,GO:0051248,GO:0051336,GO:0051346,GO:0052547,GO:0052548,GO:0055029,GO:0060255,GO:0060548,GO:0061695,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234,GO:2000116,GO:2000117
EggNOG free text desc.U2 snRNA 3'-end processing
EggNOG OGsCOG0476@1,KOG2012@2759,KOG4596@1,KOG4596@2759
Ec32 ortholog descriptionMolybdenum cofactor biosynthesis, MoeB
Ec32 orthologEc-15_003920.1
EC6.2.1.45
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041,ko04121,ko04147
Hectar predicted targeting categoryother localisation
Exons2
Model size485
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12336.1802.1prot_E-fasciculatus_F_contig12336.1802.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12336 432..1316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927740.732798-CDS-E-fasciculatus_F_contig12336:431..5811622927740.732798-CDS-E-fasciculatus_F_contig12336:431..581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12336 432..581 -
1695995674.602651-CDS-E-fasciculatus_F_contig12336:431..5811695995674.602651-CDS-E-fasciculatus_F_contig12336:431..581Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12336 432..581 -
1622927740.747486-CDS-E-fasciculatus_F_contig12336:1115..13161622927740.747486-CDS-E-fasciculatus_F_contig12336:1115..1316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12336 1116..1316 -
1695995674.613695-CDS-E-fasciculatus_F_contig12336:1115..13161695995674.613695-CDS-E-fasciculatus_F_contig12336:1115..1316Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12336 1116..1316 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927740.7602959-UTR-E-fasciculatus_F_contig12336:1316..14501622927740.7602959-UTR-E-fasciculatus_F_contig12336:1316..1450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12336 1317..1450 -
1695995674.6220157-UTR-E-fasciculatus_F_contig12336:1316..14501695995674.6220157-UTR-E-fasciculatus_F_contig12336:1316..1450Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12336 1317..1450 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12336.1802.1

>prot_E-fasciculatus_F_contig12336.1802.1 ID=prot_E-fasciculatus_F_contig12336.1802.1|Name=mRNA_E-fasciculatus_F_contig12336.1802.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=117bp
MASGLGGHEHGGRGGEDRVQDILSMCPAAMGSGLQVALTETEGSARLRTR
AVATIKGLLQQVKANIKNPDRSLCSDLQRMAELRPKVFREPELLEAVGEV
LTGKGAKTAIQSSGGRE
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mRNA from alignment at E-fasciculatus_F_contig12336:432..1450-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12336.1802.1 ID=mRNA_E-fasciculatus_F_contig12336.1802.1|Name=mRNA_E-fasciculatus_F_contig12336.1802.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1019bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12336:432..1450- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CACAAGCAGTAGTCCAGCAGCATCGCGTGTGGTCACAAGTGCGTGCGAAG
CCACCTCTGACTTGTCCTGGTACACTGACACGGTTTTCCGTCCTCGAGTT
CCTGTAAGAATCTGATGTGAGTGCTTGCAACATCATGGCTTCGGGGCTAG
GAGGTCATGAGCACGGAGGGCGGGGCGGCGAGGACCGAGTGCAGGATATC
CTGTCTATGTGCCCGGCGGCGATGGGCTCCGGCCTACAAGTTGCGCTCAC
CGAGACGGAAGGCAGCGCTCGGTTGCGCACGAGAGCTGTGGCTACAATTA
AGGGTTTGCTGCAGCAAGTCAAGGCCAACATCAAGGTGAAACACCTCGCG
CGCTGCTGTGATAGTCTACGGTATGTTGTGAATGTACCTTTTTGGCCAAC
TGCTGTTGGCAACTATGCCTCGAACAAGCTTTACAGCCGTAATCGACGGC
GCGACTGCTGTTGCATGATCACGATGTTGTCTGCAGTCAATAAGGCTTTG
ATGTTGTGATGTTGTAGGTGAGATATTTGTATGCCATTTCATTACCGATT
ACCGCTGCCATTGTCGGAAATTGTTTGCGCTGCTGGAGTAGTTTTTTTTT
CCCTCGCGGTGTACGGGCATTTCACACAAGGCTTTGTTGGGCGGTTACGT
ACAAGCATGGACGCTCGTGAAACACACCGATATGGCTGCTGCTGCTGCTG
CTGCAACTGCAACTACAAAATGGACTGTGGTAGATTGTCTTAGTCCAACA
CCTGAAAACACCGCTTGCTACTATTGTAGATTTATGTAGATGTGCCGACG
GGTATCGCATTTCACCCTCGCCGTTGCTGCCCCCCCCCCCCCCCNNNNNN
NNNGGCCAACGATATCCAGAACCCCGACCGCAGCCTCTGCAGCGACCTCC
AGCGAATGGCCGAGCTACGGCCCAAGGTGTTTCGCGAGCCCGAGCTGTTG
GAGGCCGTTGGCGAGGTTCTGACGGGGAAAGGGGCAAAGACCGCGATACA
GTCGTCGGGCGGGCGGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12336:432..1450-

>mRNA_E-fasciculatus_F_contig12336.1802.1 ID=mRNA_E-fasciculatus_F_contig12336.1802.1|Name=mRNA_E-fasciculatus_F_contig12336.1802.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=702bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12336:432..1450- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCTTCGGGGCTAGGAGGTCATGAGCACGGAGGGCGGGGCGGCGAGGA
CCGAGTGCAGGATATCCTGTCTATGTGCCCGGCGGCGATGGGCTCCGGCC
TACAAGTTGCGCTCACCGAGACGGAAGGCAGCGCTCGGTTGCGCACGAGA
GCTGTGGCTACAATTAAGGGTTTGCTGCAGCAAGTCAAGGCCAACATCAA
GATGGCTTCGGGGCTAGGAGGTCATGAGCACGGAGGGCGGGGCGGCGAGG
ACCGAGTGCAGGATATCCTGTCTATGTGCCCGGCGGCGATGGGCTCCGGC
CTACAAGTTGCGCTCACCGAGACGGAAGGCAGCGCTCGGTTGCGCACGAG
AGCTGTGGCTACAATTAAGGGTTTGCTGCAGCAAGTCAAGGCCAACATCA
AGAACCCCGACCGCAGCCTCTGCAGCGACCTCCAGCGAATGGCCGAGCTA
CGGCCCAAGGTGTTTCGCGAGCCCGAGCTGTTGGAGGCCGTTGGCGAGGT
TCTGACGGGGAAAGGGGCAAAGACCGCGATACAGTCGTCGGGCGGGCGGG
AGAACCCCGACCGCAGCCTCTGCAGCGACCTCCAGCGAATGGCCGAGCTA
CGGCCCAAGGTGTTTCGCGAGCCCGAGCTGTTGGAGGCCGTTGGCGAGGT
TCTGACGGGGAAAGGGGCAAAGACCGCGATACAGTCGTCGGGCGGGCGGG
AG
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