mRNA_E-fasciculatus_F_contig100.18.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig100.18.1 vs. uniprot
Match: D8LFE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE7_ECTSI) HSP 1 Score: 1122 bits (2903), Expect = 0.000e+0 Identity = 618/841 (73.48%), Postives = 643/841 (76.46%), Query Frame = 1 Query: 1 MYSPGSDKGGFKKEELSSRVFEGTETPKGTTFPSIGAEPENASTLTAGGRSSG-GGWSTFKDNSSAITGSKGRDDGGGDDWTLTMKRLKEGSSAGTERQRAYSLFEHLDVTCSHRIYAWELTRFFPNAIGCTKDNVIEIAFTCNTLGLTVEEDEEGMVVVAGWEEDSAAAEHPSLMIGMRILSIDGWDLPCALTAAASRHGGPGRGGRFESSLRKCESVLEALSDGDLEDGENTLHVLEVAMPAIVVTKSNTWLDMDVSGVTVAVSVPLGVYNTIGAYFTALQEAGRDQHPTELRHFGVKFDPAQPFVMLTAGYAPFRILWRSGEHSSQSCRRLLHCSAEQDSDVQMSHTSGRWDSLTIEGTKQRLNLKPGALTDFAEHLILEARDIGQNATSVTSRDDHSCPSVGVEGVSLEYEEFCTLYNMYLSTQEGLWRARDLLMTGFLSKEEYDAMLERQAVDDQRRRRLRKMLRTRKENKERKRQQLARRIA---MSPRSPQGS--SVEPWA-VMTTPTASDDXXXSGGIIIAPVDGVEAGGSVCDTESTGGAGNRTRRRRQRQTRRQADYAEEALAERMAHLLSQR---QAIKRAQQKAIKAKLAEMMYETHKFEEELGGAGQWGSSKRSVELAKLGLEDCRSGQARATAKVGKRPHPEDIHPAFLGYFHQRRSPKGAWDPALRSPVFFGKLSEALTRREAFRGEGNLAALKALIDGASFDRRSSRGGARQEESAGRSNSSPRSTCQTFPLAPTTRGKVRQRLREVGTTYDSAGLVHPSFFGLMTIPDDQDCRHQSPVFFGYDLAKKPRPRGGVLGDDEKPKREDFVVHRKGKPCPVCLVGKPG 2493
MYSPGSDKGGF++EE SSRVFEG+ETPKGTTFPSIGA+PENASTLTAGGR+SG GGWS+FKDNSSAI GSKGRDDGGGDDWTLTMK LKEG SAGTERQRAYSLFEHLDVTCSHRIYAWEL RFFP AIGCT DNV+EIAFTCNTLGLTVEEDEEGMVVVAGWEEDSAAAEHPSLMIGMRILSIDGWDLPCALTAAASRHG PGR G F+SSLRKCESVLEALS+GD+EDGEN LHVLEVAMPAIVVTKSNTWLDMDVSGV VAVSVPLGVYNTIGAYFTALQEAGRDQHPTELRHFGVKFDPAQPFVML+AGYAPFRILWRSGEHS+QSCR+LLHCSAEQ +GR+ + + ERKRQQLARRIA S ++PQGS EPWA V+TTP ASDD I P DGVE G V DT S GGAG RTRRRR RQ RRQ DYAEEAL ERMAHLLSQR +AIKRAQQKAIKAKLAEMMYETHKFEEELGGAGQWGSSKRSVELAKLGLEDCRSGQ VGKRPHPEDIHPAFLGYFHQRRSPKGAWDPALRSPVFFGKLSEALTRREA RGEGNLAALKAL+ GASFDRRSS+G ARQE S G++NSSP STCQ FPLAP TRGKVRQRLREVGTTYDSAGLVHPS FGLMTIPDDQD RHQSPVFFGYDL KKPR RGG L D EKPKREDFVVHRKGKPCPVCLVGKPG
Sbjct: 1 MYSPGSDKGGFREEEPSSRVFEGSETPKGTTFPSIGADPENASTLTAGGRNSGVGGWSSFKDNSSAIAGSKGRDDGGGDDWTLTMKLLKEGRSAGTERQRAYSLFEHLDVTCSHRIYAWELARFFPPAIGCTTDNVVEIAFTCNTLGLTVEEDEEGMVVVAGWEEDSAAAEHPSLMIGMRILSIDGWDLPCALTAAASRHGAPGRDGTFKSSLRKCESVLEALSEGDMEDGENALHVLEVAMPAIVVTKSNTWLDMDVSGVAVAVSVPLGVYNTIGAYFTALQEAGRDQHPTELRHFGVKFDPAQPFVMLSAGYAPFRILWRSGEHSTQSCRKLLHCSAEQ-------MVAGRFGNPN--------------------------------------------------------------------------------------------------------------------SSERKRQQLARRIAKWTQSNQAPQGSITGAEPWAAVVTTPPASDDD-------IVPADGVEERGVVRDTVSMGGAGKRTRRRR-RQPRRQVDYAEEALTERMAHLLSQRDRTKAIKRAQQKAIKAKLAEMMYETHKFEEELGGAGQWGSSKRSVELAKLGLEDCRSGQ------VGKRPHPEDIHPAFLGYFHQRRSPKGAWDPALRSPVFFGKLSEALTRREAVRGEGNLAALKALMSGASFDRRSSQGEARQEASVGQNNSSPCSTCQAFPLAPATRGKVRQRLREVGTTYDSAGLVHPSCFGLMTIPDDQDSRHQSPVFFGYDLVKKPRSRGGALEDHEKPKREDFVVHRKGKPCPVCLVGKPG 704
BLAST of mRNA_E-fasciculatus_F_contig100.18.1 vs. uniprot
Match: A0A6H5K0L0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L0_9PHAE) HSP 1 Score: 536 bits (1381), Expect = 1.980e-177 Identity = 263/304 (86.51%), Postives = 275/304 (90.46%), Query Frame = 1 Query: 2311 MTIPDDQDCRHQSPVFFGYDLAKKPRPRGGVLGDDEKPKREDFVVHRKGKPCPVCLVGKPGCPCCWDFPKGYVPHDFAYLGPFEDTSASRPASRRGSRGTVDGGGSVSSLPPVGGKIASTPRTPVPAPAAEKSETGAAASGSPAGRRVSLLMEEVHGGIATDKGEGADNEDKEKPELHTDLTTSAAITLYRSIVGSIVRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCT------IDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYNLTTPKSTVTVLCTTFLSKIK 3204
MTIPDDQD RHQSPVFFGYDL KKPR +GG L D EKPKREDFV+HR+GK CPVCLVGKPGCPCCWDFP+GYVPHDFAYLGPFED+SASRP SRR SR TVDG GSVSSLPPVG K STPRTP A AA++ ETGAAASGSP GRRVSLLM+ +HG I TDKGEGAD+E+KEKPELHTDLTTSAAITLYRSIVGS +RIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCT IDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYNLTTPKSTVTVLCTTFLSKIK
Sbjct: 1 MTIPDDQDSRHQSPVFFGYDLVKKPRSKGGALEDHEKPKREDFVLHRRGKSCPVCLVGKPGCPCCWDFPEGYVPHDFAYLGPFEDSSASRPTSRRSSRSTVDGRGSVSSLPPVGDKTGSTPRTPAAAAAADRVETGAAASGSPPGRRVSLLMKGMHGVITTDKGEGADSEEKEKPELHTDLTTSAAITLYRSIVGSTIRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCTCVFMGGIDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYNLTTPKSTVTVLCTTFLSKIK 304
BLAST of mRNA_E-fasciculatus_F_contig100.18.1 vs. uniprot
Match: A0A7S2MF12_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2MF12_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 5.140e-17 Identity = 85/337 (25.22%), Postives = 135/337 (40.06%), Query Frame = 1 Query: 2464 CPVCLVGKPGCPCCWDFPKGYVPHDFAYLGPFEDTSASRPASRRGSRGTVDGGGSVSSLPPVGGKIASTPRTPVPAPAAEKSETGAAASGSPAGRRVSLLMEEVHGGIATDKGEGADNEDKEKPELHTDLTTSAAITLYRSIVGSIVRIFVKVIPCGTATCLWMDSSWPVSYLFDLWRANAAEGCTIDAFMCLPTIPGLWNLDNRNLPETDTTLGVHTGNLPLSTYNLTTPKSTVTVLCTTFLSKIKTRENIERYLVY-ETGLGKQAVLEVFDHLVGCPKHP-ENDPIQKVLCGLMEHRVAQQQLVDNDDDNAEVAKRNRLLLNAEKARKQTALEKK 3468
CP+CLV KPGCP CW+FPKG+ P D+ + G ++G VD KP++HTDLTT A+ +R I S + VK IP G L + + V YL L+R+ + G A + +PT+ G++ LDN +PE++ TL ++T ++ L Y V +L + +I + ++L+ + L Q ++ HL G + ND +Q+ L L E ++ + V DD + E + + + E+ RK L KK
Sbjct: 143 CPICLVRKPGCPFCWEFPKGFAPVDYEHKG------------KKGEHDLVD----------------------------------------------------------------------TKPKIHTDLTTVGALQTFRHINSSYTNVLVKTIPAGPVIELRVLPTDNVGYLHHLFRSKSEFGMHDQARLFIPTVNGIYCLDNDQVPESELTLALYTADIALQRYGFMGEAFPVVLLHA--MGEIGLFHDTFQHLIERQVHLPTQPKTDIIHHLEGLVEITIGNDALQESLLQLFEKQLTLDRKVAQDDLDEEAKELHEKMHAEEEMRKAMELRKK 395 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig100.18.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig100.18.1 >prot_E-fasciculatus_F_contig100.18.1 ID=prot_E-fasciculatus_F_contig100.18.1|Name=mRNA_E-fasciculatus_F_contig100.18.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1244bp MYSPGSDKGGFKKEELSSRVFEGTETPKGTTFPSIGAEPENASTLTAGGRback to top mRNA from alignment at E-fasciculatus_F_contig100:10279..27781+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig100.18.1 ID=mRNA_E-fasciculatus_F_contig100.18.1|Name=mRNA_E-fasciculatus_F_contig100.18.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=17503bp|location=Sequence derived from alignment at E-fasciculatus_F_contig100:10279..27781+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig100:10279..27781+ >mRNA_E-fasciculatus_F_contig100.18.1 ID=mRNA_E-fasciculatus_F_contig100.18.1|Name=mRNA_E-fasciculatus_F_contig100.18.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=7464bp|location=Sequence derived from alignment at E-fasciculatus_F_contig100:10279..27781+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |