mRNA_E-fasciculatus_F_contig1233.1799.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1233.1799.1
Unique NamemRNA_E-fasciculatus_F_contig1233.1799.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1233.1799.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1233contigE-fasciculatus_F_contig1233:13358..15621 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size657
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927740.1125124-CDS-E-fasciculatus_F_contig1233:13357..135181622927740.1125124-CDS-E-fasciculatus_F_contig1233:13357..13518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1233 13358..13518 +
1695995674.27591-CDS-E-fasciculatus_F_contig1233:13357..135181695995674.27591-CDS-E-fasciculatus_F_contig1233:13357..13518Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1233 13358..13518 +
1622927740.159542-CDS-E-fasciculatus_F_contig1233:15125..156211622927740.159542-CDS-E-fasciculatus_F_contig1233:15125..15621Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1233 15126..15621 +
1695995674.2890272-CDS-E-fasciculatus_F_contig1233:15125..156211695995674.2890272-CDS-E-fasciculatus_F_contig1233:15125..15621Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1233 15126..15621 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1233.1799.1prot_E-fasciculatus_F_contig1233.1799.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1233 13358..15621 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1233.1799.1

>prot_E-fasciculatus_F_contig1233.1799.1 ID=prot_E-fasciculatus_F_contig1233.1799.1|Name=mRNA_E-fasciculatus_F_contig1233.1799.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=219bp
PLCCSLLVPHTHTLSPEGKEPQGNASDTARHACDPATLMGSYHGAPMGSA
FPEGVLDVDNGSEDEAEAGSVSPTGRPPSGSGGGGGSETTGAAVAAGKEM
VEKKNNTQQPNSPARLAAAPSFEQEQKQQQHGKEGARGVPGEEEGVAARG
GAESGGGGDSAASDSEETDSDDGDCRAGGAEAAGTANATTAAMPSATKTT
TTTTTTTPATTTDNAAGEE
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mRNA from alignment at E-fasciculatus_F_contig1233:13358..15621+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1233.1799.1 ID=mRNA_E-fasciculatus_F_contig1233.1799.1|Name=mRNA_E-fasciculatus_F_contig1233.1799.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2264bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1233:13358..15621+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCTCTGCTGTTCGCTGCTGGTACCGCACACCCACACTCTGTCTCCGGA
AGGAAAGGAACCTCAAGGCAACGCCTCCGACACCGCGAGGCACGCCTGCG
ATCCAGCCACGCTGATGGGGTCGTACCACGGTGCGCCCATGGGGTCGGCG
TTCCCGGAAGGGTGAGCAGCAGTCGTCGTCGAAAAGAGAGCAGGTCGCGA
TAAACCTTCAAGAGCCAGGATCCATTATAGTCTAGGCCTGCACCCCCATG
ACCGCCTCAAAAAACATGTCAAAGAAGTTGATCAGTCCTCCATCTCGGGA
GGGGGTACACCGTAGCTGCAGATGTCACCCCCGAGAGGGGGTGGACACGT
GCGATGACACCCTCCTACCCAGTAGGCGGCCTCTCTCTCGGACATTCTTT
CGTTATACCACGTGCGGACGGTCTGTGCTGGTGATCGAACTAAATAGTAA
AATTATGTGATCTTTTTTTAGCGGTCGACACCCCAAAACAGCAACACACC
CCAAAAGCCAACCAACGTTCTTTTGGAGCACACCAGCCAGCCGTGTCTCG
CTCGCTGCCTCTCTCCGCGTGGAGGGGGGCGATTGCGTACACCGCAGCAG
TGCCGGGCGCTCGCACAAGAGACCCGGCTTTTGCCTTTCTGTTCATTCGT
GCCACGCTCCACAACACGGCGTGAGCGTGAGTGCTCAGGGTTGTAGACCA
CAGATCCAGGCATACAGTTAGCCTAATTGACGGGTAAAAGACAGAGACCG
TCCTTCTTTTGCTGTGACACAAGGAATGGTTTGTGTTAATAGCATTGCCC
GCAGAGAGAGGGAGGAGGGGAGGAGCGGAGACGGAGAGGGGGCTACCGAG
TTATGTACCATGCTCTCTCGTAGCCTCTGGGCAGCTACGAGCACACACCT
TACATCAGCGAAACTGCTACACGTTGCTACAAGTAATCTACTGCAAAATA
AAGTTGGCGTGCATTGTTTCAACCACGGTTGGTTGTTGCAACCGGGTGCG
GCGGAAGGAAGGCGTTGCAATTCACCTTCGGCACAATACAATACAACCGT
TGGTTTTGCTTTTGCTGTTCTGATAGGATATGCATATGGATGAACACTCG
AGTGTTCTCTTGAGGAGGAGGCTAAATCACTCCTCGCTGGTCGGCGCAGC
GTTAGCTACACAGAACGCGCCACCACATCCGTTAACCTATTATTGTAGCC
GCTTGTTGTGGACATCCTGGTCTAAACATCGCGGCTTCAGTCCCTCTCTG
GAGAGAGAAAACTACCAATTGAAAACTACAGCGTAACAGAGTAAATAATT
AGGTTTACAGTGTGGGGTGGGTTCCAAGTTCTCACAATTTAATGAGAAAT
TATCACCCTCATGTTCTCAACTTGCACCAAGATGTTGGCGCATACCTCAA
GACTCCGCTTCCTCTTGCAAGAGGCAATGTCCCGGTTGCTGCACAGCCTA
GAGTAAAAGATGAATGCCACGCTGCTTTTCCCGCCCCCCGCAGCTCATGT
TGCCCGCCATCGACGAGACACTTACGTCGACAGCAATGCCCGTTCATCAA
GCACTCTACCAATCACGCGAGGAAAAGGCCGTCATGTTGAACCGCACCAA
AACTGACCTCCCCCCAGTAAAGCACCCCCCCCCCCCAGTAGAGCGCGGGA
GAACAACGCGTCTAGCGCCCTCAGAACTCATCACACAAATACCCTGACTT
CGATCCCATCCCGCAAACATACAAACGACGGTTCGCCTTTACGCCGGCGG
CGGTGACTATTGTTTTAGGGTCCTCGACGTGGACAACGGCTCGGAAGATG
AAGCGGAGGCTGGGTCCGTTTCGCCCACCGGTCGTCCACCCAGCGGTAGC
GGCGGCGGCGGCGGCAGCGAGACGACGGGGGCGGCGGTGGCGGCAGGGAA
GGAGATGGTCGAGAAGAAAAACAACACCCAGCAGCCCAACAGCCCAGCCA
GGCTCGCCGCTGCTCCTTCTTTCGAGCAGGAACAGAAGCAGCAGCAGCAC
GGGAAGGAAGGGGCACGGGGCGTTCCTGGCGAGGAGGAAGGCGTGGCGGC
GAGAGGCGGTGCTGAGAGCGGGGGGGGCGGGGATTCCGCTGCATCTGACT
CCGAAGAGACCGATAGTGATGATGGTGACTGCCGGGCAGGGGGTGCAGAG
GCGGCCGGCACCGCCAACGCGACAACAGCAGCAATGCCGTCGGCAACAAA
AACAACAACAACAACAACAACAACAACGCCTGCTACTACCACCGACAATG
CCGCAGGAGAAGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1233:13358..15621+

>mRNA_E-fasciculatus_F_contig1233.1799.1 ID=mRNA_E-fasciculatus_F_contig1233.1799.1|Name=mRNA_E-fasciculatus_F_contig1233.1799.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1314bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1233:13358..15621+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCTCTGCTGTTCGCTGCTGGTACCGCACACCCACACTCTGTCTCCGGA
AGGAAAGGAACCTCAAGGCAACGCCTCCGACACCGCGAGGCACGCCTGCG
ATCCAGCCACGCTGATGGGGTCGTACCACGGTGCGCCCATGGGGTCGGCG
TTCCCGGAAGGCCTCTCTGCTGTTCGCTGCTGGTACCGCACACCCACACT
CTGTCTCCGGAAGGAAAGGAACCTCAAGGCAACGCCTCCGACACCGCGAG
GCACGCCTGCGATCCAGCCACGCTGATGGGGTCGTACCACGGTGCGCCCA
TGGGGTCGGCGTTCCCGGAAGGGGTCCTCGACGTGGACAACGGCTCGGAA
GATGAAGCGGAGGCTGGGTCCGTTTCGCCCACCGGTCGTCCACCCAGCGG
TAGCGGCGGCGGCGGCGGCAGCGAGACGACGGGGGCGGCGGTGGCGGCAG
GGAAGGAGATGGTCGAGAAGAAAAACAACACCCAGCAGCCCAACAGCCCA
GCCAGGCTCGCCGCTGCTCCTTCTTTCGAGCAGGAACAGAAGCAGCAGCA
GCACGGGAAGGAAGGGGCACGGGGCGTTCCTGGCGAGGAGGAAGGCGTGG
CGGCGAGAGGCGGTGCTGAGAGCGGGGGGGGCGGGGATTCCGCTGCATCT
GACTCCGAAGAGACCGATAGTGATGATGGTGACTGCCGGGCAGGGGGTGC
AGAGGCGGCCGGCACCGCCAACGCGACAACAGCAGCAATGCCGTCGGCAA
CAAAAACAACAACAACAACAACAACAACAACGCCTGCTACTACCACCGAC
AATGCCGCAGGAGAAGAGGGTCCTCGACGTGGACAACGGCTCGGAAGATG
AAGCGGAGGCTGGGTCCGTTTCGCCCACCGGTCGTCCACCCAGCGGTAGC
GGCGGCGGCGGCGGCAGCGAGACGACGGGGGCGGCGGTGGCGGCAGGGAA
GGAGATGGTCGAGAAGAAAAACAACACCCAGCAGCCCAACAGCCCAGCCA
GGCTCGCCGCTGCTCCTTCTTTCGAGCAGGAACAGAAGCAGCAGCAGCAC
GGGAAGGAAGGGGCACGGGGCGTTCCTGGCGAGGAGGAAGGCGTGGCGGC
GAGAGGCGGTGCTGAGAGCGGGGGGGGCGGGGATTCCGCTGCATCTGACT
CCGAAGAGACCGATAGTGATGATGGTGACTGCCGGGCAGGGGGTGCAGAG
GCGGCCGGCACCGCCAACGCGACAACAGCAGCAATGCCGTCGGCAACAAA
AACAACAACAACAACAACAACAACAACGCCTGCTACTACCACCGACAATG
CCGCAGGAGAAGAG
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