mRNA_E-fasciculatus_F_contig12323.1793.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12323.1793.1 vs. uniprot
Match: A0A6H5LC29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC29_9PHAE) HSP 1 Score: 776 bits (2005), Expect = 7.970e-265 Identity = 546/754 (72.41%), Postives = 579/754 (76.79%), Query Frame = 1
Query: 1 QPCDFSLLRARSALTGETEDADLHVFCQTKGMATARSLCKISDGHGICADLVPPTVLKFSAPSSIDGGGDGG-CGNGGGRRSSGLPEYSGPPWAGVDTLTSKDVKVVQLWGLSDCVAPAFDHLVSQRTNRPVNRRLELGSGAGDVSNGISDNLKRGATV-----------------------------------------KLKDDGQVVHVTGQRAAADKVYCAVAESLSEVLPNIIQAVDMKNTGVMRIMATSHAVQEMARAGGADAAEIKMFLVWLEKTLVVQMPGGNEGKLQAMCQVLRHAVQQWRAQNVSVELSPMLVSKAAQRYRRNVVAGGVKDIRYGFVDILSEAVGVDLWLDGLELRGQVVDACGQASAQAKLETEMEKMSQDLGVTTRLVGAEGLSVETASVETAENASVSSNVEVSQQGSQSPPEGVVERVVLLAQASVHGVGGSLIHEEESIDGGXXXXXXXXXXXXXXXXXPXXXXXXXXSTTGAPTTAXSAXXSTIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------STTDAPSAAERAPWSSPPRQFPAND-----------KCFEQQQDKXXXXXXXXXXXXXXPQGCHVSEAGGGDSMHAPDPESITPVTGI-AVNPPPSTLSHNAAANNVNIVAVGSQNRASAPAARNEAAVPWGSTTLFRGDRGGGRGGRMKGRDAVQQRRGHQRPAVQRNPRGLPLMVPLIPGVPAPHSGNN 2082
+PCDFSLLRARSALTGETEDADLHVFC+TKGMATARSLCKISD HGICADLVPPTVLKFSAPSSIDGGGD G CG+ G +RSSGLPEYSGPPWA VDTLTSKDVKV QLWGLS VAPAFDHLVSQRTNRPVNR LELGS AGD+SN DNL RGATV KL+D GQVVHV GQRA ADKV+CAVAESLSEV+P+IIQAVDMK+TG MRIMATSHAVQEMARAGGAD E+KMFLVWLEK LVVQM GGNEGKLQAMC+VLRHAV+QWRAQNVSVELSPML SKAAQRY RNVVAGGVKDIRY FV+ LSEAVGVDLWLDG+ELRGQVVD CGQASAQAKLETEM KMSQDLGV TRLVGAEGLSVE A +NA VSSNV+VSQQ +QSPPE VVER VLLAQ S HGVGG L H+EE +D G XXXXXXXXXXX XXXXXXXX X XX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX STT AP++A R + PPR+ PA K FEQQQD XXXXXXXXXXX Q CH AP+PE I+ VTG+ AV+PP STLS NAA NN +IVAVGSQ+RASA AARN+A VPW STT FR RGGG GGRMK R AVQ+RRG+ RPAVQR P GL LM PLIPGVP P SGNN
Sbjct: 486 KPCDFSLLRARSALTGETEDADLHVFCRTKGMATARSLCKISDCHGICADLVPPTVLKFSAPSSIDGGGDDGDCGSDGEQRSSGLPEYSGPPWADVDTLTSKDVKVFQLWGLSGSVAPAFDHLVSQRTNRPVNRCLELGSSAGDLSNAFPDNLARGATVLFSCLRAAVEAATNARHVLLGPTVSLRLNLVAAPLNFGPKVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDIIQAVDMKSTGAMRIMATSHAVQEMARAGGADVDEVKMFLVWLEKRLVVQMTGGNEGKLQAMCRVLRHAVRQWRAQNVSVELSPMLASKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGMELRGQVVDPCGQASAQAKLETEMGKMSQDLGVATRLVGAEGLSVEKA-----KNACVSSNVDVSQQEAQSPPEAVVERAVLLAQVSAHGVGGPLTHKEEKVDDGDAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPRSTTTAPASAGRVLFRPPPRRIPAQVQEDETNVKQPYKRFEQQQDXXXXXXXXXXXX----QDCH-----------APEPEWISRVTGVGAVDPPRSTLSRNAATNNASIVAVGSQHRASASAARNDATVPWRSTTHFRDGRGGGEGGRMKSRGAVQRRRGYLRPAVQREPGGLTLMGPLIPGVPVPDSGNN 1219
BLAST of mRNA_E-fasciculatus_F_contig12323.1793.1 vs. uniprot
Match: D8LJ16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ16_ECTSI) HSP 1 Score: 584 bits (1506), Expect = 4.290e-198 Identity = 297/346 (85.84%), Postives = 314/346 (90.75%), Query Frame = 1
Query: 1 QPCDFSLLRARSALTGETEDADLHVFCQTKGMATARSLCKISDGHGICADLVPPTVLKFSAPSSIDGGGDGGCGNGGGRRSSGLPEYSGPPWAGVDTLTSKDVKVVQLWGLSDCVAPAFDHLVSQRTNRPVNRRLELGSGAGDVSNGISDNLKRGATVKLKDDGQVVHVTGQRAAADKVYCAVAESLSEVLPNIIQAVDMKNTGVMRIMATSHAVQEMARAGGADAAEIKMFLVWLEKTLVVQMPGGNEGKLQAMCQVLRHAVQQWRAQNVSVELSPMLVSKAAQRYRRNVVAGGVKDIRYGFVDILSEAVGVDLWLDGLELRGQVVDACGQASAQAKLETEMEKM 1038
+PC+FSLLRARSALTGETEDADLHV C+TKGMATARSLCKISD HGICADLVPPTVL FSAPSS+DGGG GGCG+ G RRS LPEYSGPPWA VDTLTSKDVKV QLWGLS VAPAFDHLVSQRTNR VNR LELGSGAGD+SN I DNL +GATVKL+D GQVVHV GQRA ADKV+CAVAESLSEV+P++IQAVDMK+TG MRIMATSHAVQEMARAGGAD EIKMFLVWLE +LVVQ+ GGNEGKLQAMCQVLRHAV+QWRAQNVSVELSPMLVSKAAQRY RNVVAGGVKDIRY FV+ LSEAVGVDLWLDGLELRGQVVD CGQASAQAKLETE M
Sbjct: 356 KPCEFSLLRARSALTGETEDADLHVLCRTKGMATARSLCKISDCHGICADLVPPTVLNFSAPSSVDGGGGGGCGSDGERRSPDLPEYSGPPWADVDTLTSKDVKVFQLWGLSGSVAPAFDHLVSQRTNRSVNRCLELGSGAGDLSNAIPDNLAKGATVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDVIQAVDMKSTGAMRIMATSHAVQEMARAGGADVDEIKMFLVWLENSLVVQITGGNEGKLQAMCQVLRHAVRQWRAQNVSVELSPMLVSKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGLELRGQVVDPCGQASAQAKLETERRIM 701
BLAST of mRNA_E-fasciculatus_F_contig12323.1793.1 vs. uniprot
Match: D7FTQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ8_ECTSI) HSP 1 Score: 154 bits (389), Expect = 4.320e-35 Identity = 117/347 (33.72%), Postives = 172/347 (49.57%), Query Frame = 1
Query: 10 DFSLLRARSALTGETEDADLHVFCQTKGMATARSLCKISDGHGICADLVPPTVLKFSAPSSIDGGGDGGCGNGGGRRSSGLPEYSGPPWAGVDTLTSKDVKVVQLWGLSDCVAPAFDHLVSQRTNRPVNRRLELGSGAGDVSNGISDNLKR----GATVKLKDDGQV--VHVTGQ-RAAADKVYCAVAESLSEVLPNIIQAVDMKNTGVMRIMATSHAVQEMARAGGADAAEIKMFLVWLEKTLVVQMP--GGNEGKLQAMCQVLRHAVQQWRAQNVSVELSPMLVSKAAQRYRRNVVAGGVKDIRYGFVDILSEAVGVDLWLDGLELRGQVVDACGQASAQAKLET 1023
DF LLRAR + D ++ + R L + D +G+ + VP + + GLPEY P D T KVVQ+WGL DCV AFD +V+ + + ++LGS +D LKR G VK +G V V ++G+ AD V +SL E LP+ +Q VDMK TG MR ++ A+ E+A+A G D +++++ W K +++Q+ GG+ G +Q MC L V++WR Q + V L+ ++ KA +R+ + AGG + FV LSE +G LWLDG +L +V D + SAQAKLET
Sbjct: 1148 DFLLLRAR-VRSARDPDGSQYLLPLEVSIKLRRRLRDLGDLYGVVINSVPARSVGLGSXXXXX------------XXXXGLPEYLCCPGVDTDDNTQDHRKVVQIWGLRDCVVGAFDRVVASLLDN-MEYVVKLGSVG-------ADELKRLRFKGKNVKYFTEGGVTGVRISGRPHLFADANVSTVLQSLPERLPDKVQCVDMKYTGAMRALSRPWAIDEIAQASGIDQSQVRVTPQWQNKCMLLQVLKLGGDRGAIQGMCTFLEGRVKEWRGQRLVVTLTAEIIDKARKRFFSSGSAGGFHFSSF-FVASLSEEIGEHLWLDGFQLTARV-DPDDRDSAQAKLET 1471
BLAST of mRNA_E-fasciculatus_F_contig12323.1793.1 vs. uniprot
Match: A0A6H5JR78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR78_9PHAE) HSP 1 Score: 133 bits (335), Expect = 2.130e-28 Identity = 112/355 (31.55%), Postives = 168/355 (47.32%), Query Frame = 1
Query: 10 DFSLLRARSALTGETEDADLHVFCQTKGMATARSLCKISDGHGICADLVPPTVLKFSAPSSIDGGGDGGCGNGGGRRSSGLPEYSGPPWAGVDTLTSKDVKVVQLWGLSDCVAPAFDHLVSQRTNRPVNRRLELGSGAGDVSNGISDNLKRGATVKLKDDGQV--VHVTGQRAAADKVYCAVAESLSEVLPNIIQAVDMKNTGVMRIMATSHAVQEMARAGGADAAEIKMFLVWLEKTLVVQMP--GGNEGKLQAM-------------CQVLRHAVQQWRAQNVSVELSPMLVSKAAQRYRRNVVAGGVKDIRYGFVDILSEAVGVDLWLDGLELRGQVVDACGQASAQAKLET 1023
DF LLRAR T + D ++ R L + D +G+ + VP S +G G G LP+Y P + T KVVQ+WGL +CV AFD +V+ + ++LG D G+ +G V +G V V ++G+ AD V +S+ EVLP+ +Q VDMK TG MR + A+ E+ARA G D +++++ W K +++Q+ GG+ G +Q M C L V++WR + + V L+ ++ KA + + + AG + FV LSE +G DLWLDG +L + D + SAQAKLET
Sbjct: 1276 DFLLLRARVRSTRDP-DGSQYLLPLEVSAKLRRKLRDLGDRYGVVINGVP---------SRSEGLGSGXXX----XXXXXLPKYVCCPRVDTEDNTQDHRKVVQIWGLRNCVVGAFDRVVASLLDN-TEYVVKLGPVGADELKGLRF---KGKNVNCFTEGGVTEVRISGRPHLADANISTVLQSMPEVLPDQVQCVDMKCTGAMRAFSRPWAIDEIARASGIDQSQVRVTPQWQNKCMLLQVLKLGGDRGAIQGMSAYLNLKGLNEIRCTFLEGRVKEWRGRRLVVTLTAEIIDKARKCFFSSGSAGEFHFCSF-FVASLSEEIGEDLWLDGFQLTARA-DPDDRDSAQAKLET 1610 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12323.1793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12323.1793.1 >prot_E-fasciculatus_F_contig12323.1793.1 ID=prot_E-fasciculatus_F_contig12323.1793.1|Name=mRNA_E-fasciculatus_F_contig12323.1793.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=694bp QPCDFSLLRARSALTGETEDADLHVFCQTKGMATARSLCKISDGHGICADback to top mRNA from alignment at E-fasciculatus_F_contig12323:158..4067+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12323.1793.1 ID=mRNA_E-fasciculatus_F_contig12323.1793.1|Name=mRNA_E-fasciculatus_F_contig12323.1793.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3910bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12323:158..4067+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12323:158..4067+ >mRNA_E-fasciculatus_F_contig12323.1793.1 ID=mRNA_E-fasciculatus_F_contig12323.1793.1|Name=mRNA_E-fasciculatus_F_contig12323.1793.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=4164bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12323:158..4067+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |