mRNA_E-fasciculatus_F_contig12321.1792.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12321.1792.1
Unique NamemRNA_E-fasciculatus_F_contig12321.1792.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12321.1792.1 vs. uniprot
Match: A0A6H5KA26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA26_9PHAE)

HSP 1 Score: 214 bits (544), Expect = 1.270e-59
Identity = 124/188 (65.96%), Postives = 134/188 (71.28%), Query Frame = 1 
Query:    1 RCGGGRYVAPLDPLSLRPALALAIFRQQTRGQSIPGQQGQGQRDRLKKC---IQCIQXXXXXXRSEPAAACVGVDDGDVRQQPPRQQAETRSSRSGNVGAKKSLPIGLHSSSGRNAPPVPRRISPNDDPAGASPREGPPQNGPIGEGGTTALLGEPQRERTCCTHTRVRGSCGWARQVEVVLDAAGFV 555
            RC GGRY+APLD LSLRPALA  IFRQQTRGQ +PGQQGQ Q+   + C        XXXXXX         GVDDGD RQQPPRQ+A TRSS  G  GAK SLPIG +SS G  APPV RRISPNDDPA  SPR+G P  GPI EG TT L GE Q E+TCC HT + GSCGW R+VEVVLDAAGFV
Sbjct: 1125 RCEGGRYIAPLDSLSLRPALAFTIFRQQTRGQPVPGQQGQSQQPTSRSCQXXXXXXXXXXXXXXXXXXXXXXGVDDGDGRQQPPRQEAGTRSSLGGKEGAKNSLPIGSNSSPGTRAPPVHRRISPNDDPAEKSPRKGAPHRGPIFEGDTTTLPGESQPEQTCCVHTPIGGSCGWTRRVEVVLDAAGFV 1312
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12321.1792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KA26_9PHAE1.270e-5965.96Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12321contigE-fasciculatus_F_contig12321:1592..2382 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionPIN domain-like
Ec32 orthologEc-03_004120.1
Hectar predicted targeting categoryother localisation
Exons1
Model size793
Cds size567
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927739.5533037-CDS-E-fasciculatus_F_contig12321:1591..21581622927739.5533037-CDS-E-fasciculatus_F_contig12321:1591..2158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12321 1592..2158 +
1695995674.0919259-CDS-E-fasciculatus_F_contig12321:1591..21581695995674.0919259-CDS-E-fasciculatus_F_contig12321:1591..2158Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12321 1592..2158 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927739.564085-UTR-E-fasciculatus_F_contig12321:2158..23821622927739.564085-UTR-E-fasciculatus_F_contig12321:2158..2382Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12321 2159..2382 +
1695995674.1042001-UTR-E-fasciculatus_F_contig12321:2158..23821695995674.1042001-UTR-E-fasciculatus_F_contig12321:2158..2382Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12321 2159..2382 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12321.1792.1prot_E-fasciculatus_F_contig12321.1792.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12321 1592..2158 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12321.1792.1

>prot_E-fasciculatus_F_contig12321.1792.1 ID=prot_E-fasciculatus_F_contig12321.1792.1|Name=mRNA_E-fasciculatus_F_contig12321.1792.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=189bp
RCGGGRYVAPLDPLSLRPALALAIFRQQTRGQSIPGQQGQGQRDRLKKCI
QCIQQQQEQQRSEPAAACVGVDDGDVRQQPPRQQAETRSSRSGNVGAKKS
LPIGLHSSSGRNAPPVPRRISPNDDPAGASPREGPPQNGPIGEGGTTALL
GEPQRERTCCTHTRVRGSCGWARQVEVVLDAAGFVWQS*
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mRNA from alignment at E-fasciculatus_F_contig12321:1592..2382+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12321.1792.1 ID=mRNA_E-fasciculatus_F_contig12321.1792.1|Name=mRNA_E-fasciculatus_F_contig12321.1792.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=791bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12321:1592..2382+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTTGCGGTGGTGGACGGTATGTGGCCCCCCTAGACCCTCTGAGCTTGCG
GCCAGCGCTAGCGCTAGCGATTTTCCGGCAGCAGACTCGCGGTCAGTCCA
TTCCAGGACAACAGGGACAGGGCCAGCGAGATAGGCTGAAAAAGTGCATA
CAGTGCATACAGCAGCAGCAGGAGCAGCAGCGAAGCGAGCCGGCAGCTGC
CTGTGTAGGCGTAGACGATGGTGACGTGCGACAGCAGCCACCGCGGCAAC
AAGCGGAAACGCGCTCTTCACGAAGCGGTAACGTTGGCGCGAAGAAGTCG
CTGCCGATTGGCTTGCACAGCAGCTCCGGAAGAAACGCACCTCCCGTACC
CAGAAGGATATCTCCGAACGACGACCCAGCGGGGGCGTCACCCCGCGAAG
GGCCACCGCAGAATGGACCTATCGGTGAAGGGGGTACCACGGCGTTGCTA
GGAGAGCCTCAGCGTGAGCGAACATGCTGCACCCACACGCGGGTTCGAGG
GAGCTGTGGTTGGGCGCGGCAAGTTGAGGTCGTTTTGGATGCGGCCGGTT
TCGTGTGGCAGTCGTGAGGTATTGGCAGTACAACCTAGTTCTTGTTATAC
CATGAGTAATAGTCTATCCTATCGCGTGCTATGTGAGTTGTTCCCACCAA
GAGTGTTCCCAAGGCGGGCTTTTTGGTGCGAAAGCTGACAATAGTCCTTG
AAAGAATCGGTAAACAATGGAATGCAGGCACTTCATCTATCAATCGGAGG
CTTCGTGTGAACCGATACGTAGCTGGCAAGTGTCTTCGGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12321:1592..2382+

>mRNA_E-fasciculatus_F_contig12321.1792.1 ID=mRNA_E-fasciculatus_F_contig12321.1792.1|Name=mRNA_E-fasciculatus_F_contig12321.1792.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1134bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12321:1592..2382+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTTGCGGTGGTGGACGGTATGTGGCCCCCCTAGACCCTCTGAGCTTGCG
GCCAGCGCTAGCGCTAGCGATTTTCCGGCAGCAGACTCGCGGTCAGTCCA
TTCCAGGACAACAGGGACAGGGCCAGCGAGATAGGCTGAAAAAGTGCATA
CAGTGCATACAGCAGCAGCAGGAGCAGCAGCGAAGCGAGCCGGCAGCTGC
CTGTGTAGGCGTAGACGATGGTGACGTGCGACAGCAGCCACCGCGGCAAC
AAGCGGAAACGCGCTCTTCACGAAGCGGTAACGTTGGCGCGAAGAAGTCG
CTGCCGATTGGCTTGCACAGCAGCTCCGGAAGAAACGCACCTCCCGTACC
CAGAAGGATATCTCCGAACGACGACCCAGCGGGGGCGTCACCCCGCGAAG
GGCCACCGCAGAATGGACCTATCGGTGAAGGGGGTACCACGGCGTTGCTA
GGAGAGCCTCAGCGTGAGCGAACATGCTGCACCCACACGCGGGTTCGAGG
GAGCTGTGGTTGGGCGCGGCAAGTTGAGGTCGTTTTGGATGCGGCCGGTT
TCGTGTGGCAGTCGTGACGTTGCGGTGGTGGACGGTATGTGGCCCCCCTA
GACCCTCTGAGCTTGCGGCCAGCGCTAGCGCTAGCGATTTTCCGGCAGCA
GACTCGCGGTCAGTCCATTCCAGGACAACAGGGACAGGGCCAGCGAGATA
GGCTGAAAAAGTGCATACAGTGCATACAGCAGCAGCAGGAGCAGCAGCGA
AGCGAGCCGGCAGCTGCCTGTGTAGGCGTAGACGATGGTGACGTGCGACA
GCAGCCACCGCGGCAACAAGCGGAAACGCGCTCTTCACGAAGCGGTAACG
TTGGCGCGAAGAAGTCGCTGCCGATTGGCTTGCACAGCAGCTCCGGAAGA
AACGCACCTCCCGTACCCAGAAGGATATCTCCGAACGACGACCCAGCGGG
GGCGTCACCCCGCGAAGGGCCACCGCAGAATGGACCTATCGGTGAAGGGG
GTACCACGGCGTTGCTAGGAGAGCCTCAGCGTGAGCGAACATGCTGCACC
CACACGCGGGTTCGAGGGAGCTGTGGTTGGGCGCGGCAAGTTGAGGTCGT
TTTGGATGCGGCCGGTTTCGTGTGGCAGTCGTGA
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