mRNA_E-fasciculatus_F_contig12315.1787.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12315.1787.1
Unique NamemRNA_E-fasciculatus_F_contig12315.1787.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12315.1787.1 vs. uniprot
Match: A0A6H5KCQ2_9PHAE (TPT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCQ2_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 2.420e-40
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 3 
Query:   81 MKIPPRSEIAIEQVPALPKGDSTSPGAGTSDQNSEAVWARFSPRKGNTSVGRTSACLQTPALMALNFCSAVGIVAANKALFRHAEGLSFATSLT 362
            MKIPPRS I  E+VPA  +G+STSPGAG +D+NSE V ARF PRKGNT +GRT ACLQTP LMALNFCSAVGIVAANKALFRHAEGL FATSLT
Sbjct:    1 MKIPPRSAIVNEEVPAFNEGESTSPGAGANDKNSEDVCARFFPRKGNTFLGRTYACLQTPGLMALNFCSAVGIVAANKALFRHAEGLGFATSLT 94
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BLAST of mRNA_E-fasciculatus_F_contig12315.1787.1 vs. uniprot
Match: D7FWD0_ECTSI (TPT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD0_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 5.320e-38
Identity = 75/94 (79.79%), Postives = 79/94 (84.04%), Query Frame = 3 
Query:   81 MKIPPRSEIAIEQVPALPKGDSTSPGAGTSDQNSEAVWARFSPRKGNTSVGRTSACLQTPALMALNFCSAVGIVAANKALFRHAEGLSFATSLT 362
            MKIPPRS I  E+VPA   G+STS GAG +DQNSEAV  RF PRKGNTS+GRT ACLQTP LMALNFCSAVGIVAANKALFRH EGL FATSLT
Sbjct:    1 MKIPPRSAIVNEEVPAHNNGESTSSGAGANDQNSEAVCVRFFPRKGNTSLGRTYACLQTPGLMALNFCSAVGIVAANKALFRHTEGLGFATSLT 94
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12315.1787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCQ2_9PHAE2.420e-4079.79TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FWD0_ECTSI5.320e-3879.79TPT domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12315contigE-fasciculatus_F_contig12315:2123..3152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score142.9
Seed ortholog evalue7.6e-32
Seed eggNOG ortholog2880.D7FWD0
KEGG koko:K11665,ko:K14301,ko:K15285
KEGG TC1.I.1
KEGG Pathwayko03013,map03013
KEGG ModuleM00427
GOsGO:0000003,GO:0000139,GO:0000278,GO:0000281,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005338,GO:0005457,GO:0005459,GO:0005460,GO:0005464,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005794,GO:0005802,GO:0005886,GO:0006810,GO:0006811,GO:0006820,GO:0007049,GO:0007275,GO:0008150,GO:0008152,GO:0008509,GO:0008514,GO:0009058,GO:0009605,GO:0009607,GO:0009624,GO:0009791,GO:0009832,GO:0009833,GO:0009987,GO:0010154,GO:0010191,GO:0010192,GO:0010214,GO:0012505,GO:0015075,GO:0015165,GO:0015291,GO:0015297,GO:0015711,GO:0015780,GO:0015783,GO:0015786,GO:0015790,GO:0015931,GO:0015932,GO:0016020,GO:0022402,GO:0022414,GO:0022804,GO:0022857,GO:0031090,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0034220,GO:0036080,GO:0042546,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044249,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0048316,GO:0048354,GO:0048359,GO:0048608,GO:0048731,GO:0048856,GO:0050896,GO:0051179,GO:0051234,GO:0051301,GO:0051704,GO:0051707,GO:0055085,GO:0061458,GO:0061640,GO:0071554,GO:0071669,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072334,GO:0090480,GO:0090481,GO:0097708,GO:0098588,GO:0098656,GO:0098791,GO:1901264,GO:1901505,GO:1903047
EggNOG free text desc.carbohydrate transport
EggNOG OGsKOG1441@1,KOG1441@2759
Ec32 ortholog descriptionTriose-phosphate transporter domain
Ec32 orthologEc-25_000550.1
EC3.6.4.12
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03019,ko03036
Hectar predicted targeting categoryother localisation
Exons3
Model size363
Cds size282
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12315.1787.1prot_E-fasciculatus_F_contig12315.1787.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12315 2560..3152 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927738.6241276-UTR-E-fasciculatus_F_contig12315:2122..21841622927738.6241276-UTR-E-fasciculatus_F_contig12315:2122..2184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12315 2123..2184 +
1695995673.663335-UTR-E-fasciculatus_F_contig12315:2122..21841695995673.663335-UTR-E-fasciculatus_F_contig12315:2122..2184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12315 2123..2184 +
1622927738.6407168-UTR-E-fasciculatus_F_contig12315:2541..25591622927738.6407168-UTR-E-fasciculatus_F_contig12315:2541..2559Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12315 2542..2559 +
1695995673.6768558-UTR-E-fasciculatus_F_contig12315:2541..25591695995673.6768558-UTR-E-fasciculatus_F_contig12315:2541..2559Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12315 2542..2559 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927738.6530018-CDS-E-fasciculatus_F_contig12315:2559..26941622927738.6530018-CDS-E-fasciculatus_F_contig12315:2559..2694Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12315 2560..2694 +
1695995673.6874375-CDS-E-fasciculatus_F_contig12315:2559..26941695995673.6874375-CDS-E-fasciculatus_F_contig12315:2559..2694Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12315 2560..2694 +
1622927738.6671896-CDS-E-fasciculatus_F_contig12315:3005..31521622927738.6671896-CDS-E-fasciculatus_F_contig12315:3005..3152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12315 3006..3152 +
1695995673.69521-CDS-E-fasciculatus_F_contig12315:3005..31521695995673.69521-CDS-E-fasciculatus_F_contig12315:3005..3152Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12315 3006..3152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12315.1787.1

>prot_E-fasciculatus_F_contig12315.1787.1 ID=prot_E-fasciculatus_F_contig12315.1787.1|Name=mRNA_E-fasciculatus_F_contig12315.1787.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=94bp
MKIPPRSEIAIEQVPALPKGDSTSPGAGTSDQNSEAVWARFSPRKGNTSV
GRTSACLQTPALMALNFCSAVGIVAANKALFRHAEGLSFATSLT
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mRNA from alignment at E-fasciculatus_F_contig12315:2123..3152+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12315.1787.1 ID=mRNA_E-fasciculatus_F_contig12315.1787.1|Name=mRNA_E-fasciculatus_F_contig12315.1787.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1030bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12315:2123..3152+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCTGCCTCGTGTATGGATCCATCACCACACTGGTGTTCCCTTCGTGCCCT
ACCGAGAGGAAGGTAAGCACCCCCAGCATAAATTGTATCCAAAAAAAGTT
CATCTAGGATAAAACATTGGTAGGGGTGGACCAGGTCGGGCGTGGAGGGA
TAACCTAAACCTGTTCAGCGCACTTCGCCCTCCGTTGACGGGGGCAGGGA
GCAGGACTATGTAGTCTAGACTAGACTACAGCCGTACCTTGCCTAGAAAT
GACGTTGACGATCCTCGGTAGGAACCCCTCTCAGCAGTTGTTTGGGTGAC
ACAGATATTGCGAGCCCAGTGTTAGCGTCGCAAGAAAGCCCGGGGGTGTG
TTGCGCACACTGCTATGTACTTCCAAACGACGATGATCTGACGATTGATC
TTTCGGTGGCGGTGACCAGGCCCAGTAACAAAGCCAAATGAAGATCCCAC
CACGCTCGGAGATCGCCATCGAACAAGTACCTGCCCTCCCGAAAGGCGAC
TCAACCTCACCGGGAGCGGGCACCAGCGACCAGAATTCAGAGGCGGTTTG
GGCACGATTTTCCCCACGCAAGGTGCGCGCTGCTTGTGAACTTTGACATT
GACCCACCAGCACACGAAGTCTGACCTCCTCGCGTTTCCCCGCCGGAGGA
CGACACTACTCTGCTGATACATATGCATAGTAAGGTACAGAGGTTCCTAC
AAGAACATTTGAAGCTGTGGAATGATGCCAGAAAAAGCCAGGAGACTGTA
CTCCAGCGCCCCGATTTTCTACAAGCGCCAGTGCAAAACCTCGAAGAACA
CAGCACTAAAAAAGTGGGTCACAATCCCGCGTGCTGAAAATCTTTGCTTG
TGCTCTCCCACCGCCACAATACCCGCCTTCCAGGGAAACACCTCTGTCGG
TAGAACCTCTGCATGCCTGCAAACGCCGGCCCTCATGGCCCTCAACTTCT
GCTCAGCGGTGGGAATCGTGGCGGCCAACAAGGCGCTGTTTCGCCACGCG
GAGGGATTGAGCTTCGCCACGTCGCTAACG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12315:2123..3152+

>mRNA_E-fasciculatus_F_contig12315.1787.1 ID=mRNA_E-fasciculatus_F_contig12315.1787.1|Name=mRNA_E-fasciculatus_F_contig12315.1787.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=564bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12315:2123..3152+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGATCCCACCACGCTCGGAGATCGCCATCGAACAAGTACCTGCCCT
CCCGAAAGGCGACTCAACCTCACCGGGAGCGGGCACCAGCGACCAGAATT
CAGAGGCGGTTTGGGCACGATTTTCCCCACGCAAGATGAAGATCCCACCA
CGCTCGGAGATCGCCATCGAACAAGTACCTGCCCTCCCGAAAGGCGACTC
AACCTCACCGGGAGCGGGCACCAGCGACCAGAATTCAGAGGCGGTTTGGG
CACGATTTTCCCCACGCAAGGGAAACACCTCTGTCGGTAGAACCTCTGCA
TGCCTGCAAACGCCGGCCCTCATGGCCCTCAACTTCTGCTCAGCGGTGGG
AATCGTGGCGGCCAACAAGGCGCTGTTTCGCCACGCGGAGGGATTGAGCT
TCGCCACGTCGCTAACGGGAAACACCTCTGTCGGTAGAACCTCTGCATGC
CTGCAAACGCCGGCCCTCATGGCCCTCAACTTCTGCTCAGCGGTGGGAAT
CGTGGCGGCCAACAAGGCGCTGTTTCGCCACGCGGAGGGATTGAGCTTCG
CCACGTCGCTAACG
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