mRNA_E-fasciculatus_F_contig1231.1784.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1231.1784.1
Unique NamemRNA_E-fasciculatus_F_contig1231.1784.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1231.1784.1 vs. uniprot
Match: A0A6H5JQ60_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JQ60_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.740e-12
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRWAGFRRQGRDELFKIDRNRLGASDAVAAAVKEVYTTAVAAAFPVVGYNQ 156
            MPR AGFRRQG DELF++DR+RLG SDAVAAAVKE+ T  +AA FPV+GYNQ
Sbjct:  195 MPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTK-LAAVFPVIGYNQ 245
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BLAST of mRNA_E-fasciculatus_F_contig1231.1784.1 vs. uniprot
Match: A0A6H5L0Z2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0Z2_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 2.800e-12
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRWAGFRRQGRDELFKIDRNRLGASDAVAAAVKEVYTTAVAAAFPVVGYNQ 156
            MPR AGFRRQG DELF+IDR+RLG SDAVAAAVK++ T  +AA FPV+GYNQ
Sbjct:  179 MPRRAGFRRQGSDELFEIDRSRLGVSDAVAAAVKDICTK-LAAVFPVIGYNQ 229
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1231.1784.1 vs. uniprot
Match: A0A6H5K5C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 3.180e-12
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    1 MPRWAGFRRQGRDELFKIDRNRLGASDAVAAAVKEVYTTAVAAAFPVVGYNQ 156
            MPR AGFRRQG DELF++DR+RLG SDAVAAAVKE+ T  +AA FPV+GYNQ
Sbjct:  200 MPRRAGFRRQGSDELFEVDRSRLGVSDAVAAAVKEICTK-LAAVFPVIGYNQ 250
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1231.1784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JQ60_9PHAE2.740e-1275.00Uncharacterized protein n=3 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L0Z2_9PHAE2.800e-1275.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C0_9PHAE3.180e-1275.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1231contigE-fasciculatus_F_contig1231:14829..18210 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_002610.1
Exons3
Model size660
Cds size660
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1231.1784.1prot_E-fasciculatus_F_contig1231.1784.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1231 14829..18210 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927738.3920841-CDS-E-fasciculatus_F_contig1231:14828..149841622927738.3920841-CDS-E-fasciculatus_F_contig1231:14828..14984Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 14829..14984 +
1695995673.550312-CDS-E-fasciculatus_F_contig1231:14828..149841695995673.550312-CDS-E-fasciculatus_F_contig1231:14828..14984Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 14829..14984 +
1622927738.405569-CDS-E-fasciculatus_F_contig1231:16820..169591622927738.405569-CDS-E-fasciculatus_F_contig1231:16820..16959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 16821..16959 +
1695995673.5595648-CDS-E-fasciculatus_F_contig1231:16820..169591695995673.5595648-CDS-E-fasciculatus_F_contig1231:16820..16959Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 16821..16959 +
1622927738.4180949-CDS-E-fasciculatus_F_contig1231:17845..182101622927738.4180949-CDS-E-fasciculatus_F_contig1231:17845..18210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 17846..18210 +
1695995673.5690668-CDS-E-fasciculatus_F_contig1231:17845..182101695995673.5690668-CDS-E-fasciculatus_F_contig1231:17845..18210Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1231 17846..18210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1231.1784.1

>prot_E-fasciculatus_F_contig1231.1784.1 ID=prot_E-fasciculatus_F_contig1231.1784.1|Name=mRNA_E-fasciculatus_F_contig1231.1784.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=220bp
MPRWAGFRRQGRDELFKIDRNRLGASDAVAAAVKEVYTTAVAAAFPVVGY
NQPQWSESRHGTGYKASQCSPERLEKISRRSRLYYTILHELLAPARSTLD
NPRAISLQRPHTAVFQRTHAQHLRSPGDQAGSRKTTNCPRCWTLCVPQNL
ATQGVCEGVRDPGSVHHPSKRVCVGHPLLFSPTTERGVPNDGRDGFGTQV
AVDRQRGEHQDRDGPLHPG*
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mRNA from alignment at E-fasciculatus_F_contig1231:14829..18210+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1231.1784.1 ID=mRNA_E-fasciculatus_F_contig1231.1784.1|Name=mRNA_E-fasciculatus_F_contig1231.1784.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3382bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1231:14829..18210+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGCGCTGGGCGGGATTCAGACGCCAAGGCAGGGACGAGCTCTTCAA
GATCGATCGCAACCGCCTGGGAGCGAGCGATGCCGTCGCCGCCGCTGTGA
AGGAGGTTTACACCACAGCAGTGGCCGCGGCATTCCCCGTCGTCGGGTAC
AACCAGGTAAACGCGAGGCCACGGGGTGCCCAAGGAATGTCTTGGCCCCG
ATCCTTACCCGCTGATCGTTGGCGACAGATGGATGTCCGGCCCGCTCCGG
AATTGGTTGTTTCGTTCTATCTGTGGCACAATGTGGGGTCCTGTTCCCTG
ATCTAAATGCTCTTTTTTTTTTTTGTTTGGTCGATTTCTGAAGCGTTCAC
TTTCTCTGCCCGCTACTATAATACTGCAATAGCCTACAACAGGTGTAGAG
GTGGCCCTCAATGGCTTGTTCGTTCAACCGATCCTCTCTGTATACACCGC
CCCCTCCATAACACCGCGCCCCAGGGTTTCGACACCGCCGGGAAGGCTCT
GTGTGGGCCAAAACATTGTGGCGGCAGTCCAAGTTTACAAGGAGTGGGCC
GTCCCTGTAGCTTGGCTTACGATGAACCCCGACAAAGACAGCCAGTGTGC
AATCTACCCGGTGAGCATCAACAGACTGCCGCGTGAGGTGTGACGATAGA
GAAGCAAGCACTGACGTGGTGGCGGGACGTGCATGCAACTAAGAACTGAG
CGGTGATGTTATTAGCCGACGAAGGAGGGTCGAGGACTGAACTCACCCTG
ATTGGCGCTGAGACACTGATACCGTCAACAGCTAAAAAATGAAACACACG
ACAGAATGTACCGCGAGCAAAATGGGTGCTCATTAAGCGTACCGTCAGAG
AAGTGCCATGAGGTCATGTTTTGTGTGTGGATGAGCGGCTCATTTGCCTC
GTGTACACGATCGCCTGAGGATCTGACGGCGTTCCACATGCAGGGCGCAT
GTGAAGCATTGCCACTATTATTGTGCGGGCCATGCGTTACACCTGGTCCG
TGATCAAGATACATCCCGCTCCGGCGTCGGGATGGCCGTCCCGAGATTCG
ATTGTGGGTTGCGACCCGGACGACGAGATGCCTAAGAACATCCTCGCATA
CACGTATCTTTTTGGCGTGAGTTTATGCTTATATGGTAGGTTGCCATAAC
TGATTTTGCTTTAGGAGGAAAAAATCGAGCTCGGTGTGTGGATACGTCAG
CAATTGTGTCAAGCGTCCGTTGTTGTCAATATGCACGCGTCGACTGATCA
CATCATCTCCATCTCTCGTCTCTCCTTGTTCTTGATCTATCATATACTTG
TGCTGGCACCCCTCGCTGTACTCGTCCAGTATTCTTCTTCTTCTCCGGCT
GCTGCCAGTCCGCTCACGACCATATGCACCCGGGTTGGCCTCCCGAGGTG
TGTCATCCATGAGACCCTCGAGGATGGCACGCACGGCCCGGCCGTCTCCA
TTTTCGTGATCCTGTCTCTCCTCTGCTTGGCGGAGAATCAGGGGGGGTTG
CCGTCGTGGTAAGCGAAGGCCGCTGCGCTCGAAAGTGACGCACTAATTGA
TTGTCTTGATGCCCGCGTCTGACCGATACTTTGTGGAGTTACCGTCGTGT
CTTCATCACCCCCCTTCCCATATTATCATCGGCTGCTACATGCTGCCGTG
CCACCCACCAATTGAGATTTTGAATCTTCCGTCTTGAGAAGGAAACTAAC
TGCAATCAGCCGCTCCTCTCTCCCCCCCCCTCTCCCAAGTTTTTGCTGTT
TGCGAGGAGTACCTAAACTAACTGCGTACCAAATTGCATTGACCGATTTT
GACAAGAAAATTCAGGTGTGACCGCTTTCGTCGCAACACGACCACTGCAT
GCGTGCCTCACTGGTGCCCCATCGTTCCAGGTGGTGATGATGAAGGCCCC
CCTCGTGGCCGCCGCCAGCACAATGAGGTCTTCGAAGAACCTCGAGGAAT
ACGCTCCCGTAACCATGGCGAAATTCTTGAGTGGTTACCGAGCCGCAATG
GTCGGAATCCCGGCATGGGACTGGATATAAGGCCAGTCAGTGTAGTCCAG
AGAGGCTCGAGAAGATATCTCGTCGCAGCAGGTTGTACTACACTATACTA
CACGAGTTGCTTGCACCAGCTCGCAGTACATGTGATGACGATATATTAAA
TATGTCCTTCTTTACGTGTGTAGAATGGACCTATCAATGGATAATTTTGC
CTCAGCCCTCCTCGAGGCATGTGGTGTTTGTATCGTTCACTCGGGCCGTA
GTATGTGTATTGCGTGTAGCTTGTGCAGTCGAAACCAGAATGACTCCTTG
CGTTCCCTCGTGGCTGCGCTGAGCGTGGCATGTTGAAAAGGCATTCATTC
TAGTTGTTGTGTTGTTAGGGTTCGTCCTTGACCGCCATGCAACGAGGTAT
CTTGGCACATGAATCTGTGCCATGCAACGAGGTATCTTGTCACATGAATC
TGTGGTATCTTGGGCTGTGAATCTGTGGTATCTTGGCACATGAATCTGTG
GTATCTTGGGCTGTGAATCTGTGCGCTGTTTCGATTATTGTTGCGCTGTG
GTACGTAGGAATCACGAGTGTTTGCTAGGTGATGTCAGATTTGTACAACA
CACAGACAAACTGCTGAAATACCTGTTGTATGCATAGACTAGCATACAAA
ATGGTCTGTAAAAGATCTCCTGTTGTATGCATAGATAGACTAGCATACAA
AATGGTTTGTAAAAGATCTTGTTGGCACACGAGGAAACCTTCGTCACCCT
GTTCTGGAGAGTGGGTAGGCGCGCACGCACAGATGCTGCGACACTTCCCA
ACACCCGACGGTGGACTGCTGGGTGAACGGGTGATGGTTGACTATACAGC
TATACCGTACGTTGGGCCTCAGCAATGCCTCCTGGCCCCGCTCTCTCTTG
CAGCTGTGCCAGTCTACGAAATCTCCGAATACCCGCAAGTGGCAACCAAT
CAGACAGCCTGGCAAGCAGTAGCACAATTTTTTTTTCTTGTGTGATTAAT
CGTGTGTAGACAGAGAGTAGACAACCCGAGAGCAATCTCCTTGCAAAGGC
CACACACAGCAGTGTTCCAGAGAACGCACGCACAACACCTCCGTAGCCCG
GGAGATCAAGCAGGAAGCCGTAAGACAACGAATTGCCCCCGGTGCTGGAC
ATTGTGTGTACCACAGAATCTGGCAACACAAGGAGTGTGTGAGGGTGTGC
GAGATCCGGGATCCGTCCATCATCCCTCCAAGCGCGTGTGTGTGGGTCAT
CCTCTACTCTTTTCGCCTACCACAGAGAGAGGAGTACCAAACGACGGGCG
CGACGGGTTTGGGACCCAGGTAGCGGTGGATCGGCAGAGAGGGGAACACC
AAGATCGAGACGGTCCGCTACACCCCGGGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1231:14829..18210+

>mRNA_E-fasciculatus_F_contig1231.1784.1 ID=mRNA_E-fasciculatus_F_contig1231.1784.1|Name=mRNA_E-fasciculatus_F_contig1231.1784.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1320bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1231:14829..18210+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGCGCTGGGCGGGATTCAGACGCCAAGGCAGGGACGAGCTCTTCAA
GATCGATCGCAACCGCCTGGGAGCGAGCGATGCCGTCGCCGCCGCTGTGA
AGGAGGTTTACACCACAGCAGTGGCCGCGGCATTCCCCGTCGTCGGGTAC
AACCAGATGCCGCGCTGGGCGGGATTCAGACGCCAAGGCAGGGACGAGCT
CTTCAAGATCGATCGCAACCGCCTGGGAGCGAGCGATGCCGTCGCCGCCG
CTGTGAAGGAGGTTTACACCACAGCAGTGGCCGCGGCATTCCCCGTCGTC
GGGTACAACCAGCCGCAATGGTCGGAATCCCGGCATGGGACTGGATATAA
GGCCAGTCAGTGTAGTCCAGAGAGGCTCGAGAAGATATCTCGTCGCAGCA
GGTTGTACTACACTATACTACACGAGTTGCTTGCACCAGCTCGCAGTACA
TCCGCAATGGTCGGAATCCCGGCATGGGACTGGATATAAGGCCAGTCAGT
GTAGTCCAGAGAGGCTCGAGAAGATATCTCGTCGCAGCAGGTTGTACTAC
ACTATACTACACGAGTTGCTTGCACCAGCTCGCAGTACATTAGACAACCC
GAGAGCAATCTCCTTGCAAAGGCCACACACAGCAGTGTTCCAGAGAACGC
ACGCACAACACCTCCGTAGCCCGGGAGATCAAGCAGGAAGCCGTAAGACA
ACGAATTGCCCCCGGTGCTGGACATTGTGTGTACCACAGAATCTGGCAAC
ACAAGGAGTGTGTGAGGGTGTGCGAGATCCGGGATCCGTCCATCATCCCT
CCAAGCGCGTGTGTGTGGGTCATCCTCTACTCTTTTCGCCTACCACAGAG
AGAGGAGTACCAAACGACGGGCGCGACGGGTTTGGGACCCAGGTAGCGGT
GGATCGGCAGAGAGGGGAACACCAAGATCGAGACGGTCCGCTACACCCCG
GGTGATAGACAACCCGAGAGCAATCTCCTTGCAAAGGCCACACACAGCAG
TGTTCCAGAGAACGCACGCACAACACCTCCGTAGCCCGGGAGATCAAGCA
GGAAGCCGTAAGACAACGAATTGCCCCCGGTGCTGGACATTGTGTGTACC
ACAGAATCTGGCAACACAAGGAGTGTGTGAGGGTGTGCGAGATCCGGGAT
CCGTCCATCATCCCTCCAAGCGCGTGTGTGTGGGTCATCCTCTACTCTTT
TCGCCTACCACAGAGAGAGGAGTACCAAACGACGGGCGCGACGGGTTTGG
GACCCAGGTAGCGGTGGATCGGCAGAGAGGGGAACACCAAGATCGAGACG
GTCCGCTACACCCCGGGTGA
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