mRNA_E-fasciculatus_F_contig12308.1781.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12308.1781.1
Unique NamemRNA_E-fasciculatus_F_contig12308.1781.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12308.1781.1 vs. uniprot
Match: D7FHD1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHD1_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 1.210e-106
Identity = 168/175 (96.00%), Postives = 172/175 (98.29%), Query Frame = 1 
Query:    1 GVSSMRRRPAGRVCSSLGNTEDETAASTKKAFDDILEKGNTEECLNLLRRSGSKLEIGMAEASKLLNVMSGELKLDLKKENPHDNLTNTYNALKAAGLLRGFGSIDFAKGPSSQSRDVSAEKLLSLSGVEKQNLAPGRPTGSWLAAGVGVFGAEYLAGILMGLDPLQTVIPWTIG 525
            GVSS  RR AGRVCSSLGNTEDETAA++KKAFDDILEKGNTEECLNLLRRSGSKLEIGMAEASKLLNVMSGELKLDLKKENPHDNLTNTYNALKAAGLLRGFGSIDF+KGPSSQSRDVSAEKLLSLSGVEKQNLAPGRPTGSWLAAGVGVFGAEYLAGILMGLDPLQTVIPWT+G
Sbjct:   87 GVSSAGRRSAGRVCSSLGNTEDETAAASKKAFDDILEKGNTEECLNLLRRSGSKLEIGMAEASKLLNVMSGELKLDLKKENPHDNLTNTYNALKAAGLLRGFGSIDFSKGPSSQSRDVSAEKLLSLSGVEKQNLAPGRPTGSWLAAGVGVFGAEYLAGILMGLDPLQTVIPWTLG 261
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BLAST of mRNA_E-fasciculatus_F_contig12308.1781.1 vs. uniprot
Match: A0A7S2C9N4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C9N4_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.730e-5
Identity = 30/79 (37.97%), Postives = 46/79 (58.23%), Query Frame = 1 
Query:  292 LLRGFGSIDFAKGPSS-QSRDVSAEKLLSLSGVEKQNLAPGRPTGSWLAAGVGVFGAEYLAGILMGLDPLQTVIPWTIG 525
            LLR FGS++    P++ +  D+    LL L+G  +  L PG     W  AGVG+   E+    L+G+DPL+T++P T+G
Sbjct:    5 LLRAFGSVNADSYPAAVEPVDIDPPTLLKLTGFNQTALTPGSNGNLWTYAGVGLAIFEFNVAPLIGIDPLKTLLPLTLG 83
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12308.1781.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHD1_ECTSI1.210e-10696.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2C9N4_9STRA1.730e-537.97Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12308contigE-fasciculatus_F_contig12308:96..3774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score327.8
Seed ortholog evalue3e-87
Seed eggNOG ortholog2880.D7FHD1
EggNOG OGs28IYK@1,2QRAA@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-03_003930.1
Exons5
Model size525
Cds size513
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12308.1781.1prot_E-fasciculatus_F_contig12308.1781.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12308 108..3774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927738.1022863-UTR-E-fasciculatus_F_contig12308:95..1071622927738.1022863-UTR-E-fasciculatus_F_contig12308:95..107Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12308 96..107 +
1695995673.373211-UTR-E-fasciculatus_F_contig12308:95..1071695995673.373211-UTR-E-fasciculatus_F_contig12308:95..107Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12308 96..107 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927738.1165895-CDS-E-fasciculatus_F_contig12308:107..2211622927738.1165895-CDS-E-fasciculatus_F_contig12308:107..221Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 108..221 +
1695995673.38503-CDS-E-fasciculatus_F_contig12308:107..2211695995673.38503-CDS-E-fasciculatus_F_contig12308:107..221Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 108..221 +
1622927738.1300788-CDS-E-fasciculatus_F_contig12308:1189..12551622927738.1300788-CDS-E-fasciculatus_F_contig12308:1189..1255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 1190..1255 +
1695995673.3951614-CDS-E-fasciculatus_F_contig12308:1189..12551695995673.3951614-CDS-E-fasciculatus_F_contig12308:1189..1255Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 1190..1255 +
1622927738.1446576-CDS-E-fasciculatus_F_contig12308:1759..18491622927738.1446576-CDS-E-fasciculatus_F_contig12308:1759..1849Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 1760..1849 +
1695995673.4088235-CDS-E-fasciculatus_F_contig12308:1759..18491695995673.4088235-CDS-E-fasciculatus_F_contig12308:1759..1849Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 1760..1849 +
1622927738.1577065-CDS-E-fasciculatus_F_contig12308:2617..27731622927738.1577065-CDS-E-fasciculatus_F_contig12308:2617..2773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 2618..2773 +
1695995673.4190938-CDS-E-fasciculatus_F_contig12308:2617..27731695995673.4190938-CDS-E-fasciculatus_F_contig12308:2617..2773Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 2618..2773 +
1622927738.1742828-CDS-E-fasciculatus_F_contig12308:3687..37741622927738.1742828-CDS-E-fasciculatus_F_contig12308:3687..3774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 3688..3774 +
1695995673.4293005-CDS-E-fasciculatus_F_contig12308:3687..37741695995673.4293005-CDS-E-fasciculatus_F_contig12308:3687..3774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12308 3688..3774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12308.1781.1

>prot_E-fasciculatus_F_contig12308.1781.1 ID=prot_E-fasciculatus_F_contig12308.1781.1|Name=mRNA_E-fasciculatus_F_contig12308.1781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=171bp
MRRRPAGRVCSSLGNTEDETAASTKKAFDDILEKGNTEECLNLLRRSGSK
LEIGMAEASKLLNVMSGELKLDLKKENPHDNLTNTYNALKAAGLLRGFGS
IDFAKGPSSQSRDVSAEKLLSLSGVEKQNLAPGRPTGSWLAAGVGVFGAE
YLAGILMGLDPLQTVIPWTIG
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mRNA from alignment at E-fasciculatus_F_contig12308:96..3774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12308.1781.1 ID=mRNA_E-fasciculatus_F_contig12308.1781.1|Name=mRNA_E-fasciculatus_F_contig12308.1781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3679bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12308:96..3774+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGTGTCGTCGATGAGGAGGAGGCCTGCTGGGCGGGTGTGCTCGTCTCT
CGGGAATACCGAGGATGAGACCGCCGCGTCTACAAAGAAAGCCTTCGACG
ACATCCTGGAGAAGGGCAACACCGAGGTACAGCAGTATGTGTAAATGCAT
CCCGTACAGCAGGAACGAAGAAGAGAGGTTGGGAGTTGGGGAACCTAATT
ACTTGAAGCCACGGGCACAGGCACGAAAGATATTTGCATGGGATACAGCA
GCACTTCGAGGCGAAGCTTTGCAGTCATGGGTATGTTCCAGCTACACGCT
ATTATAATGCGTGGAAGCTTCGAAGCGTGACACATTCCACTTCCGCGCAG
CATCGGATGGAATCGTGAGTACCTGCACGGGCTAAGAACGATTGATTGTT
ATTCGAAACGCTCATATCTTGTTCCGCTCCCTTGAAAGCACAGCACAGCA
GCATGATTGCTGAATTTGAACCCGCTTCCCCCCCACGCTCCCAAGTGCGG
GTTGTAAACTTTTCCCCGGAGAGAAATGCTTTCGATCACATCTGTGTTCA
TGTAGCAGACAGTACTTAGCATCCAAGGCACCTTCTTGTCTCAGGCAGTA
CTGCATAGTGCTCTTGCGCATTGTGATGCGAGGGGCTTTGGGCGGGTACA
AACAAACCTGGCAAGTTGTTGGATATCGTATCGAATACTCTCGATACAGT
ATATCGTATCGACAATGAACACATTGGCGGGACAAATCATCACCTCCGTA
GTAGACATACCGAGTCGGAGAGATGGCACCCCCGTTTCAGCGTTTTTTTT
TTCGGTTAATTTCTCCACAACTAGGAGGGTGCGAACACCAACCGATACAT
ACCTCTCAGGAAAGCCTTTAACGACATGTTTCCATAACTACCATTTTCGG
CAGTGGTATCCCCCTGGTTGTGGAGAAACACGCTATTAAAAACGCTGACA
TGGGGGTGTCACCTCTCCGACATTCAAGGTACTTACTTTTAGGCGACCTC
AACGGTGACTCTTATCGTTTTACCTGGAGAGCAACAGCCCCCCTTCCCAC
TATCACCAATGCTGATAGCGTGTGTGTTTGTTTTTTTCATCCAGGAGTGC
CTGAACCTCCTACGACGGTCTGGCAGCAAGCTGGAGATCGGCATGGCAGA
GGCGAGCAAGGTGAGACAAAAGTGTATTTTATTCTTGCTCCTGATATCAC
CTGATGAATTACCCATCTCCATCCACAGGCAGAGAAAGAAAGAAGAATCC
ACAGACAAAGTCAATGTGAGAAATCAGCGATAAATCTACAGCCTCAGTAG
AGGCACTACGTTTTCCTTCCGAACCGAGCGTCAATTGATACAAATTGGAT
CTGATTGGTGGAATGGTCAGGTGGACGATAAACCCAACGGCTTTCGTTTT
TGTCTGAGGGGCAGGATTCGAGACATTTTGCTTTGGGCGTGAATCGCTTC
TTGGAACGTGTACCTGCATTCGTCAAGGAAAAGCTTTAATTATGGTTAAC
CTTCTTGGGCAAATCAAAGGCATTTAGGTCAAGAAGAACAGTGTAGGTCA
TGCGCTTACTACCGTGCCGTGCCCGGTTCGATTTGTGTTTTCGTTATTGT
ACCGTGTTGGATGTTCATGGCCGGTTGCTCGCTGCTTGAAAACTGCCCTC
CCTTTCTTCCTCAGCTGCTCAACGTCATGTCCGGCGAGCTCAAGCTCGAT
CTGAAGAAGGAAAACCCTCACGACAACCTCACCAACACCTACAATGCCCT
CAAGGTTTGTTTTCGTCGTTGTTCTTGTCGTTGCGATTATCGTTGTTGTT
GCTGCTGCTGCTGGTGTAGTCACTTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCAGATATCGCTCAGCTGCTGCTGTTGTTGCTATTGTTGTTCGTC
GAACCGTCTAGATACTGCTTGCTATCCAACCGCTCCGTAGACCATTCCAC
CGTTCCATGGCCAAGATGTCTCTGTTTCCTCGATATTTCGAATGGTTCTG
CGTGTGCAAAGGGGTTACATACGGGACACGGTCGCTCGAAGTTTTGCGCT
CGAACTTTGTTGTTGCCTACCGCAGCATGCACGTACCTTCCGTCGTAGGG
CGTCCACATTTGCGACGCTTCATCGTTACGATTTGCCACCGACGTTCGGG
TCGACGCACACACGTTGCTTCAAGTTCTCCTTGTCAGGCGGTTGGAAGGC
TTTCGGTAGTTTTGCCGTAGATACATGTCGCCCCCAACAACCTAGATAGA
CAATGTTGCTGTTGCGATTCCCCCCCGAACCATACAGACGCCGCGATATT
TCCACTGTAAGCTCGAGAGAGCGAACATTGTACGACGGGGCTGGGGGATA
CGAATGAAAGTTCCGCCCACGGGAATTGGCCAATGAGAAAGCAACCAAGT
GGTTCTTTGCTGTTAGCCGTAGGTACATGTCGAACGGGCCCACCGCAATA
GCCCAGGCTGTTTGTTCAGGTCCACTCCCGGGGTATTGTTGTTTTCGGTG
CCTGGACGTATTGTTTCTTCAGGCGGCCGGGCTGCTTCGAGGCTTCGGCT
CGATCGACTTCGCGAAGGGCCCCTCCTCCCAGAGCCGAGACGTGTCCGCC
GAGAAGCTTCTGTCGCTGTCGGGGGTGGAGAAGCAGAACCTTGCTCCGGG
GAGACCGACGGGGTCCTGGCTGGCGGCGGTGAGACTAACAGCAGGCACAT
CGCGATGATGTTGTTGTGGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT
GGTGGTTGCTGCTGTTTGGTGCTGCTGTAGTGGTGGTGGTAGTGGTGCCG
TTGTTGTTTCCTGGCTGGTGGAAGTGAGACAAGGCACAACGTGCTGCTGC
TGGTGCTGTTGTTGTTGTTGTTGTTGTGGTTGGTGGTGGTGAGACGAGGC
GCAACGTGATCCTGTACTTGTAGGTGGTGGTTCTGTCGTCTTCGTCGTCG
TCGTCGTTGTTGGTGGTGGTGGTGTCCTGGCTGGCGGCACGGTGATACAA
GGCTAAACGTGATGATGCTGCTGCTGCTGCTACTGTTGCTGTTGTTGGTG
GTGATGTTGGTGTTGGTGTCGTTGGTGGTGATGTTGCTGCTGTTGCTCTT
GTCGTTGTTCTCGCGTTTTGATGGAGAGAGCGTCGCGCTGATTGGCTCAT
TGCTGCCAGCGGTGCAGACCTTTAGTCAAGCATGCTCGAGGAGACCATGA
TTGCTGCCAGTGCCATGTGATGTTGTTCCCAAAGCGATGGGGGGCAAGTA
TCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTGCC
TCTCGCTGTCTCTCCCTCTGTCTATGGCTCGCCCCTCCTCTCTGTCTTTC
TCTCGGGTGTTCCCGGATAGAAGCCCGGTGTTCTTTTCGTGTGTCGATTG
CGCGTGCACGCACCCAATTGTGTGAGGGAACCACCCTGACTTCCGGCTTT
GTCGAAGATGTTGGTTGCTGGTGCCGTCGTACAAGAATGCCAGGCCTTGT
TCTGGAATCTGGCCGTACGGGAGAGGCCCGTTCGTTTCCACTACTGTAGA
CCGACCCAACCTGCATCTTTTCTTCTTCTTTTTGCTCCGCAGGGGGTCGG
GGTGTTTGGAGCAGAGTACCTGGCGGGCATTTTGATGGGCTTAGACCCTT
TGCAGACCGTCATCCCCTGGACGATAGGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12308:96..3774+

>mRNA_E-fasciculatus_F_contig12308.1781.1 ID=mRNA_E-fasciculatus_F_contig12308.1781.1|Name=mRNA_E-fasciculatus_F_contig12308.1781.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1026bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12308:96..3774+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGGAGGAGGCCTGCTGGGCGGGTGTGCTCGTCTCTCGGGAATACCGA
GGATGAGACCGCCGCGTCTACAAAGAAAGCCTTCGACGACATCCTGGAGA
AGGGCAACACCGAGATGAGGAGGAGGCCTGCTGGGCGGGTGTGCTCGTCT
CTCGGGAATACCGAGGATGAGACCGCCGCGTCTACAAAGAAAGCCTTCGA
CGACATCCTGGAGAAGGGCAACACCGAGGAGTGCCTGAACCTCCTACGAC
GGTCTGGCAGCAAGCTGGAGATCGGCATGGCAGAGGCGAGCAAGGAGTGC
CTGAACCTCCTACGACGGTCTGGCAGCAAGCTGGAGATCGGCATGGCAGA
GGCGAGCAAGCTGCTCAACGTCATGTCCGGCGAGCTCAAGCTCGATCTGA
AGAAGGAAAACCCTCACGACAACCTCACCAACACCTACAATGCCCTCAAG
CTGCTCAACGTCATGTCCGGCGAGCTCAAGCTCGATCTGAAGAAGGAAAA
CCCTCACGACAACCTCACCAACACCTACAATGCCCTCAAGGCGGCCGGGC
TGCTTCGAGGCTTCGGCTCGATCGACTTCGCGAAGGGCCCCTCCTCCCAG
AGCCGAGACGTGTCCGCCGAGAAGCTTCTGTCGCTGTCGGGGGTGGAGAA
GCAGAACCTTGCTCCGGGGAGACCGACGGGGTCCTGGCTGGCGGCGGCGG
CCGGGCTGCTTCGAGGCTTCGGCTCGATCGACTTCGCGAAGGGCCCCTCC
TCCCAGAGCCGAGACGTGTCCGCCGAGAAGCTTCTGTCGCTGTCGGGGGT
GGAGAAGCAGAACCTTGCTCCGGGGAGACCGACGGGGTCCTGGCTGGCGG
CGGGGGTCGGGGTGTTTGGAGCAGAGTACCTGGCGGGCATTTTGATGGGC
TTAGACCCTTTGCAGACCGTCATCCCCTGGACGATAGGTGGGGTCGGGGT
GTTTGGAGCAGAGTACCTGGCGGGCATTTTGATGGGCTTAGACCCTTTGC
AGACCGTCATCCCCTGGACGATAGGT
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