mRNA_E-fasciculatus_F_contig12305.1780.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12305.1780.1
Unique NamemRNA_E-fasciculatus_F_contig12305.1780.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12305.1780.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12305contigE-fasciculatus_F_contig12305:1753..2060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927738.023868-CDS-E-fasciculatus_F_contig12305:1752..20581622927738.023868-CDS-E-fasciculatus_F_contig12305:1752..2058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12305 1753..2058 +
1695995673.3641043-CDS-E-fasciculatus_F_contig12305:1752..20581695995673.3641043-CDS-E-fasciculatus_F_contig12305:1752..2058Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12305 1753..2058 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12305.1780.1prot_E-fasciculatus_F_contig12305.1780.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12305 1753..2058 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12305.1780.1

>prot_E-fasciculatus_F_contig12305.1780.1 ID=prot_E-fasciculatus_F_contig12305.1780.1|Name=mRNA_E-fasciculatus_F_contig12305.1780.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
HVYLYALDLDSVLSVSVCCSSSSLGLHEPLDFDWFNGPRVDSVVLRFSRE
MWNTSSVSNIGLSVPEPILRQTLTGSVDVVFFCRFCTWRAVKPLRNGLLD
IL
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mRNA from alignment at E-fasciculatus_F_contig12305:1753..2060+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12305.1780.1 ID=mRNA_E-fasciculatus_F_contig12305.1780.1|Name=mRNA_E-fasciculatus_F_contig12305.1780.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=308bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12305:1753..2060+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGTGTATCTGTATGCTTTGGACCTAGATAGCGTTCTCTCGGTTTCCGT
TTGTTGTTCCTCGAGTAGCCTCGGCTTGCATGAGCCCCTTGATTTCGATT
GGTTTAATGGGCCGCGTGTTGACAGTGTCGTGTTGAGATTTTCCCGGGAG
ATGTGGAACACTTCCAGCGTCAGCAACATTGGGTTGAGCGTACCTGAGCC
TATATTACGACAGACTTTGACAGGAAGTGTAGATGTTGTTTTTTTCTGCC
GGTTCTGCACGTGGCGGGCTGTGAAGCCACTTCGAAACGGTCTCCTCGAT
ATCCTGGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12305:1753..2060+

>mRNA_E-fasciculatus_F_contig12305.1780.1 ID=mRNA_E-fasciculatus_F_contig12305.1780.1|Name=mRNA_E-fasciculatus_F_contig12305.1780.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12305:1753..2060+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATGTGTATCTGTATGCTTTGGACCTAGATAGCGTTCTCTCGGTTTCCGT
TTGTTGTTCCTCGAGTAGCCTCGGCTTGCATGAGCCCCTTGATTTCGATT
GGTTTAATGGGCCGCGTGTTGACAGTGTCGTGTTGAGATTTTCCCGGGAG
ATGTGGAACACTTCCAGCGTCAGCAACATTGGGTTGAGCGTACCTGAGCC
TATATTACGACAGACTTTGACAGGAAGTGTAGATGTTGTTTTTTTCTGCC
GGTTCTGCACGTGGCGGGCTGTGAAGCCACTTCGAAACGGTCTCCTCGAT
ATCCTGCATGTGTATCTGTATGCTTTGGACCTAGATAGCGTTCTCTCGGT
TTCCGTTTGTTGTTCCTCGAGTAGCCTCGGCTTGCATGAGCCCCTTGATT
TCGATTGGTTTAATGGGCCGCGTGTTGACAGTGTCGTGTTGAGATTTTCC
CGGGAGATGTGGAACACTTCCAGCGTCAGCAACATTGGGTTGAGCGTACC
TGAGCCTATATTACGACAGACTTTGACAGGAAGTGTAGATGTTGTTTTTT
TCTGCCGGTTCTGCACGTGGCGGGCTGTGAAGCCACTTCGAAACGGTCTC
CTCGATATCCTG
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