mRNA_E-fasciculatus_F_contig123.1775.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig123.1775.1
Unique NamemRNA_E-fasciculatus_F_contig123.1775.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: D7FKU1_ECTSI (Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKU1_ECTSI)

HSP 1 Score: 543 bits (1398), Expect = 1.880e-184
Identity = 381/428 (89.02%), Postives = 393/428 (91.82%), Query Frame = 3 
Query:  168 MPSSRKREELGRELGVAATSGRVSAVQHLLAAGADKEVPTPLMGMMMTPLTAAAYTNNERIVRALIQAGASVDGGSNTGHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQWGNAREPVLKMLISAGAKIDARCTKGYTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSILSGAYHNNKDAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGANPNITSRQGLTPIGLAVNMGFSGCLAVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGVATENMFADSEPYSADLLKRVTTNYKLDTPGGRCQQILLVAKAYNARSWQWPSSAAIATSXXXXXXXXXXXAGKGVVGSKPARKAASWMRQRRGVFVPAVLRFVNKADVGK---YRDRLEM 1442
            MPSSRKREELGRELGVAATSGRVSAVQHLLAAGADKEVPTPLMGMMMTPLTAAAYTNNERIVRALIQAGASVDGGSNTGHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQWGNAREPVLKMLISAGAKI+ARCTKGYTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSILSGAYHNN DAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHA KPKMIRSLIAAGANPNI S QGLTPIGLAVNMGF       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      N+  DS PY+A L KR+TTNYKLDTP GRC+Q++LVAKAYNARSWQWP+SA +ATS XXXXXXXXXXAGKGVVGSKPAR AASWMR RRGVFVPAVLRFV K ++G     + RLEM
Sbjct:    1 MPSSRKREELGRELGVAATSGRVSAVQHLLAAGADKEVPTPLMGMMMTPLTAAAYTNNERIVRALIQAGASVDGGSNTGHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQWGNAREPVLKMLISAGAKINARCTKGYTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSILSGAYHNNNDAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHAKKPKMIRSLIAAGANPNIISTQGLTPIGLAVNMGFDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYNIHTDSSPYAAKLQKRLTTNYKLDTPEGRCRQVMLVAKAYNARSWQWPASA-LATSAXXXXXXXXXXAGKGVVGSKPARNAASWMRPRRGVFVPAVLRFVTKTEMGNKNVIQHRLEM 427
[Close]
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: UPI001D064B2B (uncharacterized protein LOC123321390 n=1 Tax=Coccinella septempunctata TaxID=41139 RepID=UPI001D064B2B)

HSP 1 Score: 68.6 bits (166), Expect = 2.710e-8
Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = 3 
Query:  564 LISAGAKIDARCTKGYTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSILSGAYHNNKDAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGANPN-ITSRQGLTPIGLAVNMGFSGCLAVL 977
            L S   KIDA    G+TPL +A   G +EAVK LLE GAD+   +  G +  + +  N     +D +++ +L  G   +         P+ LA+   K  ++R LI+ G NPN +TS+ GLTP+  A  +  +  ++VL
Sbjct:   64 LESPDQKIDAENFMGWTPLMMAIRNGHIEAVKLLLEKGADITKKNKLGMNCFNLSIANGNLELVDTVLRHMLKGGISRNRIQETLS--PISLAIVFKKTHLLRMLISQGFNPNAMTSKTGLTPLMFAAAVSANKIISVL 200
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BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: A0A3Q3XGA2_MOLML (Ankyrin repeat and SOCS box containing 16 n=1 Tax=Mola mola TaxID=94237 RepID=A0A3Q3XGA2_MOLML)

HSP 1 Score: 66.2 bits (160), Expect = 1.190e-7
Identity = 48/129 (37.21%), Postives = 69/129 (53.49%), Query Frame = 3 
Query:  561 MLISAGAKIDARCTKG-YTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSILS----GAYHNNKDAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGANPNITSRQGLTPI 932
            +L+ AGA ++AR  +   TPL +AA +G  E V   L  GADVLA    G + L+    GA   ++  +  ++IQ LLDAGADP T     QH PL  A     P+++  L+  GA  +  +  G TP+
Sbjct:  205 LLLDAGADVNARMRESRLTPLHVAARRGLEEHVALFLRHGADVLATSREGETPLNAACCGAERPSEAGRYLRVIQKLLDAGADPRTAGRK-QHTPLHNACANCSPRIVEVLLQHGAKADAANCAGYTPL 332
[Close]
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: A0A8J3GV34_9RHOB (Uncharacterized protein n=1 Tax=Seohaeicola zhoushanensis TaxID=1569283 RepID=A0A8J3GV34_9RHOB)

HSP 1 Score: 62.4 bits (150), Expect = 2.110e-7
Identity = 42/137 (30.66%), Postives = 73/137 (53.28%), Query Frame = 3 
Query:  552 VLKMLISAGAKIDARCTKGYTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSILSGAYHNNKDAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGANPNITSRQGLTPIGLAVNMGFSG 962
            +++ L++ GA +DAR T+G TPL +AA+    +A++ L +AGAD+ A +Y  + +++ A      A   +++ L ++ G DP           L+ A H    +++R LI AGA  N  +    T +  AV +G  G
Sbjct:   45 MIEKLVAEGASVDARDTRGRTPLHVAAFASRDDALRALAKAGADMNALEYQAYDVVTIAAV----ADDPELMSLAIELGNDPGLVTSPYLGTALIAAAHLGHAEVVRRLIHAGAPLNHINNLHWTAVMEAVVLGDGG 177
[Close]
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: A0A3Q2D6E7_CYPVA (Ankyrin repeat and SOCS box containing 16 n=4 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2D6E7_CYPVA)

HSP 1 Score: 65.1 bits (157), Expect = 3.010e-7
Identity = 47/130 (36.15%), Postives = 71/130 (54.62%), Query Frame = 3 
Query:  558 KMLISAGAKIDARCTKG-YTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSIL----SGAYHNNKDAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGANPNITSRQGLTPI 932
            K+L+  GA I+ R  +   TPL +AA +G  E ++  L  GADVLA +  G + L    SGA   ++  +  ++IQ LLDAGA+P T     QH PL  A     P+++  L+  GA  ++ +  G TP+
Sbjct:  205 KLLLEGGADINVRSRESRLTPLHVAAQRGLEEHLELFLSLGADVLATNREGETPLNAACSGAERPSEAGRYLRVIQKLLDAGANPQTAGRK-QHTPLHNACANCCPRIVDVLLEHGAKADVENCAGYTPM 333
[Close]
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: A0A6P5A7W8_BRABE (ankyrin-1-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P5A7W8_BRABE)

HSP 1 Score: 65.1 bits (157), Expect = 4.240e-7
Identity = 62/224 (27.68%), Postives = 96/224 (42.86%), Query Frame = 3 
Query:  306 MTPLTAAAYTNNERIVRALIQAGASVDGGSNTGHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQWGNAREPVLKMLISAGAKIDARCTKGYTPLKLAAWKGTVEAVKTLLEAGADV-LANDYTGHSILSGAYHNNKDAKIDKIIQLLLD-AGADPDTTDP-----------------------DGQHPPLLLAVHANKPKMIRSLIAAGANPN 902
            +TPL  A  T NE +VR L+Q GA V+  +  G +                                     AA+  NA + V   L+  GA ++A   +G+TPL +AA +G +E V+TL++AGAD+ +    TG + LS A H N  A ++ ++Q     A  + D  +P                        G+   LL A   + P ++ +L+ AGAN N
Sbjct:  140 VTPLILAVVTKNEDLVRCLLQLGADVNSTNEAGESPLHFVLTGATPNPSHATRKTPI---------------AAKDRNATDAVFAALVENGADLNASDKQGFTPLHVAAERGCLEEVQTLVKAGADINVQTPVTGLTPLSLAKHANNVAVVNYLVQHAEGKANKNIDLNEPYEVNVYKEEYYHHGANTCTPLTETGKTTYLLQACLVSSPVLVSALVKAGANVN 348
[Close]
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: UPI00189A5E22 (ankyrin repeat and SOCS box protein 16 n=1 Tax=Nematolebias whitei TaxID=451745 RepID=UPI00189A5E22)

HSP 1 Score: 64.3 bits (155), Expect = 5.240e-7
Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 3 
Query:  558 KMLISAGAKIDARCTKG-YTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSIL----SGAYHNNKDAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGANPNITSRQGLTPI 932
            ++L+  GA ++ R  +   TPL +AA +G  E V   L  GADVLA    G + L    SGA   ++  +  ++IQ LLDAGADP T     QH PL  A     P+++  L+  GA   + +  G TP+
Sbjct:  205 QLLLEGGADVNVRSRESRLTPLHVAARRGLEEHVDLFLHHGADVLATSQEGETPLNAACSGAERPSEAGRYLRVIQKLLDAGADPRTAGRK-QHTPLHNACANCCPRIVEVLLQRGAQAEVVNCAGHTPM 333
[Close]
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: UPI001C8F688B (uncharacterized protein n=1 Tax=Aspergillus pseudoviridinutans TaxID=1517512 RepID=UPI001C8F688B)

HSP 1 Score: 62.4 bits (150), Expect = 7.230e-7
Identity = 48/131 (36.64%), Postives = 65/131 (49.62%), Query Frame = 3 
Query:  552 VLKMLISAGAKIDAR-CTKGYTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSILSGAYHNNKDAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGANPNITSRQGLTPIGLA 941
            +L+ LI AGA ++ R   +G TPL   AW G  +AV+ LLEAGAD      TG +IL  A   +      K+++LLLDAG D +  D       +L A        IR L  AGA+      +G   + LA
Sbjct:   68 ILQKLIKAGADLNPRRMPRGLTPLYYEAWLGREDAVRILLEAGADPSIQTETGETILQQAIKGSHT----KVVRLLLDAGVDVNVRDFRYGVNAILTAASWGADDCIRLLQRAGADVFAVDHRGCNGLHLA 194
[Close]
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: UPI0016017524 (serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI0016017524)

HSP 1 Score: 63.2 bits (152), Expect = 8.670e-7
Identity = 62/221 (28.05%), Postives = 100/221 (45.25%), Query Frame = 3 
Query:  309 TPLTAAAYTNNERIVRALIQAGASVDGGSNTGHTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAQWGNAREPVLKMLISAGAKIDARCTKGYTPLKLAAWKGTVEAVKTLLEAGADV-LANDYTGHSILSGAYHNNKDAKID--------KIIQLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGANPNI-TSRQGLTPIGLA 941
            TPL  A    +E +VR L+Q GA V+  +  G +                                     A +  NA + V   L+  G  ++    +G+T L +AA KG++E V+TL++AGAD+ +    TG + LS A H +  A ++        K I+ L++   D   +D  G    L +AV     + +++L+ AGA+ N+ T   GLTP+ LA
Sbjct:  140 TPLILAVVMRSEDLVRCLLQLGADVNSTNEAGESALHYVFTGTTQNPSHATRKTPM---------------ATKDRNATDAVFTALVENGVDLNLSDKQGFTALHVAAEKGSLEEVQTLVKAGADINVQTPVTGLTPLSLAKHASNVAVVNFLLQCAEGKDIKALVENSVDLILSDKQG-FTALHVAVEKGSLEEVQTLVKAGADINVQTPVTGLTPLSLA 344
[Close]
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Match: A0A4Q3W724_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=bacterium TaxID=1869227 RepID=A0A4Q3W724_9BACT)

HSP 1 Score: 63.2 bits (152), Expect = 1.240e-6
Identity = 49/115 (42.61%), Postives = 63/115 (54.78%), Query Frame = 3 
Query:  552 VLKMLISAGAKIDARCTKGYTPLKLAAWKGTVEAVKTLLEAGADVLANDYTGHSILSGAYHNNKDAKIDKIIQLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGAN 896
            V  +L+ AGA ID    +GY+ L  AA +G    VK LLE GA V A   TG + L  A  +++D+    +I LLLDAGAD + TD DGQ P      +A   +  R LI  GAN
Sbjct:  342 VAALLLDAGADIDRVGGQGYSLLMTAAEEGNEPLVKFLLERGASVAATS-TGATALHYAMLSDEDS----VIDLLLDAGADVNATDVDGQTP----LFYARSLQASRLLIRRGAN 447
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig123.1775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKU1_ECTSI1.880e-18489.02Similar to ankyrin 2,3/unc44 n=2 Tax=Ectocarpus Ta... [more]
UPI001D064B2B2.710e-833.81uncharacterized protein LOC123321390 n=1 Tax=Cocci... [more]
A0A3Q3XGA2_MOLML1.190e-737.21Ankyrin repeat and SOCS box containing 16 n=1 Tax=... [more]
A0A8J3GV34_9RHOB2.110e-730.66Uncharacterized protein n=1 Tax=Seohaeicola zhoush... [more]
A0A3Q2D6E7_CYPVA3.010e-736.15Ankyrin repeat and SOCS box containing 16 n=4 Tax=... [more]
A0A6P5A7W8_BRABE4.240e-727.68ankyrin-1-like n=1 Tax=Branchiostoma belcheri TaxI... [more]
UPI00189A5E225.240e-736.15ankyrin repeat and SOCS box protein 16 n=1 Tax=Nem... [more]
UPI001C8F688B7.230e-736.64uncharacterized protein n=1 Tax=Aspergillus pseudo... [more]
UPI00160175248.670e-728.05serine/threonine-protein phosphatase 6 regulatory ... [more]
A0A4Q3W724_9BACT1.240e-642.61Ankyrin repeat domain-containing protein n=1 Tax=b... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig123contigE-fasciculatus_F_contig123:24027..29125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score545.4
Seed ortholog evalue2.3e-152
Seed eggNOG ortholog2880.D7FKU1
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-17_001370.1
Exons8
Model size2379
Cds size1281
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig123.1775.1prot_E-fasciculatus_F_contig123.1775.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig123 24604..28194 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927737.0583756-UTR-E-fasciculatus_F_contig123:24026..241661622927737.0583756-UTR-E-fasciculatus_F_contig123:24026..24166Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig123 24027..24166 +
1695995672.6717849-UTR-E-fasciculatus_F_contig123:24026..241661695995672.6717849-UTR-E-fasciculatus_F_contig123:24026..24166Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig123 24027..24166 +
1622927737.069997-UTR-E-fasciculatus_F_contig123:24576..246031622927737.069997-UTR-E-fasciculatus_F_contig123:24576..24603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig123 24577..24603 +
1695995672.6855283-UTR-E-fasciculatus_F_contig123:24576..246031695995672.6855283-UTR-E-fasciculatus_F_contig123:24576..24603Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig123 24577..24603 +
1622927737.1758325-UTR-E-fasciculatus_F_contig123:28194..291251622927737.1758325-UTR-E-fasciculatus_F_contig123:28194..29125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig123 28195..29125 +
1695995672.777013-UTR-E-fasciculatus_F_contig123:28194..291251695995672.777013-UTR-E-fasciculatus_F_contig123:28194..29125Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig123 28195..29125 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927737.0816507-CDS-E-fasciculatus_F_contig123:24603..247771622927737.0816507-CDS-E-fasciculatus_F_contig123:24603..24777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 24604..24777 +
1695995672.6952875-CDS-E-fasciculatus_F_contig123:24603..247771695995672.6952875-CDS-E-fasciculatus_F_contig123:24603..24777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 24604..24777 +
1622927737.0919094-CDS-E-fasciculatus_F_contig123:25566..257551622927737.0919094-CDS-E-fasciculatus_F_contig123:25566..25755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 25567..25755 +
1695995672.708988-CDS-E-fasciculatus_F_contig123:25566..257551695995672.708988-CDS-E-fasciculatus_F_contig123:25566..25755Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 25567..25755 +
1622927737.1036065-CDS-E-fasciculatus_F_contig123:26153..262301622927737.1036065-CDS-E-fasciculatus_F_contig123:26153..26230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 26154..26230 +
1695995672.7199538-CDS-E-fasciculatus_F_contig123:26153..262301695995672.7199538-CDS-E-fasciculatus_F_contig123:26153..26230Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 26154..26230 +
1622927737.114389-CDS-E-fasciculatus_F_contig123:26536..266491622927737.114389-CDS-E-fasciculatus_F_contig123:26536..26649Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 26537..26649 +
1695995672.7345054-CDS-E-fasciculatus_F_contig123:26536..266491695995672.7345054-CDS-E-fasciculatus_F_contig123:26536..26649Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 26537..26649 +
1622927737.1317337-CDS-E-fasciculatus_F_contig123:26925..270681622927737.1317337-CDS-E-fasciculatus_F_contig123:26925..27068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 26926..27068 +
1695995672.7452-CDS-E-fasciculatus_F_contig123:26925..270681695995672.7452-CDS-E-fasciculatus_F_contig123:26925..27068Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 26926..27068 +
1622927737.1471448-CDS-E-fasciculatus_F_contig123:27413..279431622927737.1471448-CDS-E-fasciculatus_F_contig123:27413..27943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 27414..27943 +
1695995672.7595012-CDS-E-fasciculatus_F_contig123:27413..279431695995672.7595012-CDS-E-fasciculatus_F_contig123:27413..27943Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 27414..27943 +
1622927737.1613488-CDS-E-fasciculatus_F_contig123:28139..281941622927737.1613488-CDS-E-fasciculatus_F_contig123:28139..28194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 28140..28194 +
1695995672.7682688-CDS-E-fasciculatus_F_contig123:28139..281941695995672.7682688-CDS-E-fasciculatus_F_contig123:28139..28194Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 28140..28194 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig123.1775.1

>prot_E-fasciculatus_F_contig123.1775.1 ID=prot_E-fasciculatus_F_contig123.1775.1|Name=mRNA_E-fasciculatus_F_contig123.1775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=427bp
MPSSRKREELGRELGVAATSGRVSAVQHLLAAGADKEVPTPLMGMMMTPL
TAAAYTNNERIVRALIQAGASVDGGSNTGHTPLHCCAMEGQEGMMKELLD
AGANPTLTTVEGNTALHTAAQWGNAREPVLKMLISAGAKIDARCTKGYTP
LKLAAWKGTVEAVKTLLEAGADVLANDYTGHSILSGAYHNNKDAKIDKII
QLLLDAGADPDTTDPDGQHPPLLLAVHANKPKMIRSLIAAGANPNITSRQ
GLTPIGLAVNMGFSGCLAVLLRSGGSPHSNNSSGPTLVQSAFLELYPTCL
ALLFQAGVATENMFADSEPYSADLLKRVTTNYKLDTPGGRCQQILLVAKA
YNARSWQWPSSAAIATSANQNEQKEGDGAGKGVVGSKPARKAASWMRQRR
GVFVPAVLRFVNKADVGKYRDRLEMK*
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mRNA from alignment at E-fasciculatus_F_contig123:24027..29125+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig123.1775.1 ID=mRNA_E-fasciculatus_F_contig123.1775.1|Name=mRNA_E-fasciculatus_F_contig123.1775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5099bp|location=Sequence derived from alignment at E-fasciculatus_F_contig123:24027..29125+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCAACTTCTTGTGCTCGTGCCCCCCCGCCCTACCAAACAACCAAACAACA
CAACAACAAGCCGCACCCCACTGCTGGGCTAGAGTGAGACCGTGGCCAGA
GGCTTCACGGAGAGGTGGAAAGCTCAGCTAGGAGGCAGAGGTATATATTG
TCGATTGTTCTGCGTGAAGCTTGAGATGGACAACATTAACATTTTGCCTT
CACCTGCTGGTGTCATGATCTTTCCCGAGCCGAGCAACCGCTGCTTGCTC
GTCTACTGCTGCAGCAGTTATGAACTCGAATGTATCCAAGCACTCTCTTG
ACCGAGACATTCTCAATCTTCTGAGGTAGTAGACCTAACTGCTGTGTCCT
ACAAATTAACTGTGTCCTACATAAAAAAGATCAGGAATAATGGAAACGAG
ACCTCAGCAGCTACCTAGTGACACCCGCAGGCCCGCAGGCCAAAGAGTTT
TGATGGTTTGATAGCTCGCTGTCCCGTGAGTGTAAACGCGTATTTATCTA
ACTTCTACGCTGGCTATGACGCGCTCGTAAACACCACGGTCGTACAGCAG
CCCGGTTGAAACAGACAAGGGGAGAGGATGCCAAGCTCGCGAAAGAGAGA
GGAACTTGGGCGAGAACTCGGCGTTGCTGCAACGAGCGGCCGCGTGAGCG
CTGTCCAACATCTGCTTGCTGCTGGGGCGGACAAAGAAGTGCCGACGCCG
TTGATGGGCATGATGATGACCCCCCTCACTGCAGCCGCCTACACGAACAA
TGTGAGAACAACCTCCAACCCCGTGAGCTGTAAGTTCTCAAGTCCTTACG
AGACGTGGAAAGCCTGCAGTCTTCCAAGTGTTGCAGACTGAAACCAAGCT
ACTTGTGGATGCCCTCTTTCTTTGACAAAAATCGAAAATCACGTGAGTGG
TGGCTTAGACCTGCCACCTTTCGTCGACCAAGTGTCAGTCTGCTTTTCGT
GCTTTTTAGGCTTGGAAAGGGTGAAGAAGTGTATCAAGCGATACTCTGAC
CAAGTTGGCTGAGATGAGGGTGTAAGGTTACTGGGCCGTTCTCGGTCTAC
GGGAAGAACCCTCCATCGACTTCGACCTAGGTCGTAAAGGTCCTTTCCGG
AGGACGGCCTTAGTGCTTGCGTGTGCCCAGCAAGATGTGATCTGATCTCC
ACAAGTGGTGCCACTACAATACCGCTGTTGCTTGATGTTTTCCGGTATTC
TTTTATGCTCTTCGCATTGCAATTCTTTCCACGCCGGTCAGCGTCGTTTG
ACCTCACAGCAAGAAGGGAGGAAGCCAAAGTATCCAGCCTGTTTTGATTC
CACTCACTGCAAAAACTTCAACGCATCCCCTTAGACTTTGATCATATCTC
GAACGGAGTAGTCTGTCTATGAGTGTATGCTTATCTTCTGAAAGTATGTG
TTTGGCCTGACTTCGGTATAAGAGCCTGCGAACGGCTGAACGGTCAGACA
AGCTGCATCGTAGTACAAAAACCAGGACAACTGACCATTCGGTCCGAATT
GACGCTGTCCTTACTTGCCCCCCCTCCCCTCCATCCACAGGAGCGCATAG
TGAGGGCGTTGATCCAAGCAGGGGCAAGCGTTGACGGTGGATCCAACACA
GGCCATACACCTCTTCACTGCTGTGCCATGGAAGGGCAAGAGGGGATGAT
GAAAGAGCTCCTGGATGCCGGGGCCAATCCAACGCTAACCACGGTGGAAG
GGAATACCGCGTTGCACACAGCAGCGCAGGTGCGTCCCGTTCATATGTGG
GTCAAACGCTACTAACCTACAATGCTCTTTGTTGCGCTTTGATCAAACCT
AGGCAATATATCACAGGTGGGTAGGATAGCGTATGTCACCTCGAGGTCGG
CAGGCCTCCGGTTTCACAGCCGAAGTTAAGCAGTTCGTTCAGTTCGTTCC
TTTCTCGGCGTGCCGATGCCAACCGTTGGTATAACTGTTTGTGCGTCATA
CATGCCTGTCATCCATATTTCTTGACGTGTATACGCTTCGATATCCATCT
GTCTTGGGGAGTGTTTGATACATCCGCATTTGCCGGCGGACGTACGCCAT
AAGACCCCCGTTGATGTGTGCTCACCCCCCCCCTCCCCCCCCGGGTGCCC
TTTTGCCCGTGCCTCACATTGTTGCAGTGGGGAAACGCACGAGAACCGGT
GCTCAAGATGCTCATTTCTGCCGGAGCAAAGATAGACGCCCGCTGCACGA
AAGGGTGAGGTCGCAATTGAGAGGACTACCTTCGCGTGTTTTGCCTCTTC
TGCCCTAGCTTTCCGCCCTGCTGGACGAGTAATCACAGCAGCTGAGCGAG
ACCTGGTTTTCAGTTGCGCTACGGATAGATAGTGTTTCGGTGCTTCGTAC
GTTGGACGCAAAACCTGCATTCAGGGTACCACTAACATGGTACCATTCAA
GAAACGCCGTACTTCAGTTGCTCTCGGCGAAGCACAGATCAAAGCGAACT
GGTATCGACTGGGTCTGTTGACCCCGTAGCAACAACAGATATCGCTCTTG
GTGCTCCCAGGTATACCCCGCTAAAGCTCGCGGCGTGGAAGGGGACGGTT
GAAGCGGTCAAGACTCTTCTGGAAGCTGGTGCTGACGTTCTGGCGAACGA
CTACACGGGCCACAGCATTCTCTGTGCGTGCATTTTCTGTCAGGCGCTGA
AATGCCGAAAGTAGCACTGGACGGTTTGCTTGGACTCTAAGTGATACATA
TTTGGTCTAGACGAAGTGACCACGTCCATACTGTTGCCCACACATGCCTC
ACTGCTACCGCGCAGTAGCCGATGCCATATTGGGAGTAAGCACATGTGCA
ATCACGGCGTTAGCAACACACTCCTCGCTCGGCCACACCGACCCCTACAC
AGCGCTGAACTACGTGCTCGCTCTATTAACTACTGCGTCGCGCGCACAGC
TGGCGCTTACCACAACAACAAAGATGCCAAGATTGACAAGATAATCCAAC
TACTTCTTGACGCCGGAGCGGATCCCGACACAACAGACCCGGATGGGCAA
CACCCTCCCCTCCTTTTGGCGGTTCATGCCAACAAGCCCAAGGTATTTGT
TATTTCGGTTGACCGCTGTGTTCAGGTCGCCAAGTCGTTACTCGAAGGGA
ATGTGGGTTGAGGTTTCAGGGTATCTCAGCCCGCAGTTCGATGATGATTG
GTATGCAGGTACACACACTTTGTCGGTGTAGCAACACAGCGCGTCTTATC
CACTGCTTGTGAGTGATCCAATCCAAGTGACGAGGCGTGGTGTATGAGGA
CGTACCGTGGTTGAGTAGGACCTGTTCTTTCACACGGACGTTCGCGGGAC
CGCCGCACCGCTCACCCATGAAAACGGTGCTGACATGCTTCCATATTCCT
TCAACGCCCACGCGCCCTCGTACGCTTTGGTGCACAGATGATCCGCTCTC
TCATCGCTGCCGGGGCCAACCCCAACATCACATCTAGGCAAGGCCTCACA
CCAATCGGGCTTGCCGTCAACATGGGGTTTAGCGGTTGCCTGGCCGTTCT
CTTGCGCTCCGGTGGGTCTCCGCATTCTAATAACAGTAGTGGGCCCACCC
TGGTCCAGTCGGCATTCCTCGAGCTCTACCCTACCTGCCTCGCGTTGCTC
TTCCAAGCCGGGGTAGCCACCGAGAACATGTTCGCGGACTCCGAGCCCTA
TTCGGCGGACCTGCTAAAGCGCGTGACCACGAATTACAAGCTTGACACAC
CGGGGGGGCGCTGTCAGCAAATTTTGCTCGTGGCCAAGGCGTACAATGCG
CGCTCGTGGCAATGGCCGTCGTCTGCCGCCATCGCGACATCAGCAAACCA
GAATGAGCAGAAGGAAGGGGATGGGGCGGGAAAGGGGGTGGTCGGTTCGA
AGCCTGCGAGGAAAGCCGCGAGCTGGATGCGGCAGAGACGAGGTGTATTT
GTCCCCGCTGTGCTCAGGTTAGTGGACGAAGATGCCGACCGTGGACAAAT
GAACGTTTTGGCCACTGATCCTCACGGCCTCGACGTGCGGTGTAGGTTGC
TTTCCTTTGAAGCTTGGTGTTGTCCCTCGCAGTGCACCCTGTCGTATCCC
GTGGTTGCTTTCTACCTGTGACGATATCTGCGCCGCGCCCCGCCGTTTCT
CTCTTCAAACTAGGTTTGTAAATAAAGCGGATGTGGGAAAATACCGTGAT
CGCCTCGAGATGAAGTGAGGGCCCAAGATTTTTCCCCATTCCGAACACGG
GACCACGGGACTAATGGATGAGAGAGCTGTGTGATGACAGGGGGGCGACG
CAACTAGCGCACGTGGCTCGGGGTCGGTCATAGGAGAAGAAGCCATGTGC
TTGGCCTGTTTGCTGTGACCCGATGACATTTTCGGGTTGCTCAGGATTTT
GACTTTGACTGGCCGAATGTATTGCTCTGTGTCTCGTGAGTAAACTAGAT
CGATCGTATCACTCCAACCACGGGGTTGAGGGTGCTGTGGTATTAGCGAA
CGAGCAAGAGAGATACCGGCATACTTTTTACCGAGAATCGAGTAAATTCA
GAGTGCACCAGTATTTGTTCAGGTGGTTCCGTCATCTGTGGTTCGTGAGT
GATGAAAAAGTGTGCAAATCCTCCCCGGTCGCAAGTACGAGTGGAATCGA
ATGCACTGGCGGTCGCGCGGCCCTCATTGTTGCAGGCCATCTGTTCAGCG
CGCGGTTACTCTGAAACGTGTTGAACAGATTTATTCCTGAAAGGAATTTT
GTAGAAGTCGAAGGATTGTTGTGCGCGTGCGTATGATTCAAACAACAGCA
GTAGTATGTTTTTTAAGAAAAAGACAAGTAGTCTACATGTTTTGAATGTT
TGAATTGTTTGGTGTTCTTACACTGCTGTAGATCTGACTTGCTGGCTGGC
TGGGGGCTTTCTATATCCTTTCGGTTTGTTTTGTGCTCTATTTGTACTGT
CGCCTCTGCGATGATGGTAGTTTTCGGAGTCCTCTTTTACAGATCCTTGG
TGTTTTCTCAACGTTTGTACCCTTTTTCGGTAGTTCGCCTTTGACCACGG
AAGGCGCCCGTCCTCGTCAGTTGGGCCGCCGGTTTCCATGTATGTTTGAA
GGTACTGAACAGGGACCAGAATGGTTTTCAATGCGAAGAGTTCCACATC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig123:24027..29125+

>mRNA_E-fasciculatus_F_contig123.1775.1 ID=mRNA_E-fasciculatus_F_contig123.1775.1|Name=mRNA_E-fasciculatus_F_contig123.1775.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2562bp|location=Sequence derived from alignment at E-fasciculatus_F_contig123:24027..29125+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCAAGCTCGCGAAAGAGAGAGGAACTTGGGCGAGAACTCGGCGTTGC
TGCAACGAGCGGCCGCGTGAGCGCTGTCCAACATCTGCTTGCTGCTGGGG
CGGACAAAGAAGTGCCGACGCCGTTGATGGGCATGATGATGACCCCCCTC
ACTGCAGCCGCCTACACGAACAATATGCCAAGCTCGCGAAAGAGAGAGGA
ACTTGGGCGAGAACTCGGCGTTGCTGCAACGAGCGGCCGCGTGAGCGCTG
TCCAACATCTGCTTGCTGCTGGGGCGGACAAAGAAGTGCCGACGCCGTTG
ATGGGCATGATGATGACCCCCCTCACTGCAGCCGCCTACACGAACAATGA
GCGCATAGTGAGGGCGTTGATCCAAGCAGGGGCAAGCGTTGACGGTGGAT
CCAACACAGGCCATACACCTCTTCACTGCTGTGCCATGGAAGGGCAAGAG
GGGATGATGAAAGAGCTCCTGGATGCCGGGGCCAATCCAACGCTAACCAC
GGTGGAAGGGAATACCGCGTTGCACACAGCAGCGCAGGAGCGCATAGTGA
GGGCGTTGATCCAAGCAGGGGCAAGCGTTGACGGTGGATCCAACACAGGC
CATACACCTCTTCACTGCTGTGCCATGGAAGGGCAAGAGGGGATGATGAA
AGAGCTCCTGGATGCCGGGGCCAATCCAACGCTAACCACGGTGGAAGGGA
ATACCGCGTTGCACACAGCAGCGCAGTGGGGAAACGCACGAGAACCGGTG
CTCAAGATGCTCATTTCTGCCGGAGCAAAGATAGACGCCCGCTGCACGAA
AGGTGGGGAAACGCACGAGAACCGGTGCTCAAGATGCTCATTTCTGCCGG
AGCAAAGATAGACGCCCGCTGCACGAAAGGGTATACCCCGCTAAAGCTCG
CGGCGTGGAAGGGGACGGTTGAAGCGGTCAAGACTCTTCTGGAAGCTGGT
GCTGACGTTCTGGCGAACGACTACACGGGCCACAGCATTCTCTGTATACC
CCGCTAAAGCTCGCGGCGTGGAAGGGGACGGTTGAAGCGGTCAAGACTCT
TCTGGAAGCTGGTGCTGACGTTCTGGCGAACGACTACACGGGCCACAGCA
TTCTCTCTGGCGCTTACCACAACAACAAAGATGCCAAGATTGACAAGATA
ATCCAACTACTTCTTGACGCCGGAGCGGATCCCGACACAACAGACCCGGA
TGGGCAACACCCTCCCCTCCTTTTGGCGGTTCATGCCAACAAGCCCAAGC
TGGCGCTTACCACAACAACAAAGATGCCAAGATTGACAAGATAATCCAAC
TACTTCTTGACGCCGGAGCGGATCCCGACACAACAGACCCGGATGGGCAA
CACCCTCCCCTCCTTTTGGCGGTTCATGCCAACAAGCCCAAGATGATCCG
CTCTCTCATCGCTGCCGGGGCCAACCCCAACATCACATCTAGGCAAGGCC
TCACACCAATCGGGCTTGCCGTCAACATGGGGTTTAGCGGTTGCCTGGCC
GTTCTCTTGCGCTCCGGTGGGTCTCCGCATTCTAATAACAGTAGTGGGCC
CACCCTGGTCCAGTCGGCATTCCTCGAGCTCTACCCTACCTGCCTCGCGT
TGCTCTTCCAAGCCGGGGTAGCCACCGAGAACATGTTCGCGGACTCCGAG
CCCTATTCGGCGGACCTGCTAAAGCGCGTGACCACGAATTACAAGCTTGA
CACACCGGGGGGGCGCTGTCAGCAAATTTTGCTCGTGGCCAAGGCGTACA
ATGCGCGCTCGTGGCAATGGCCGTCGTCTGCCGCCATCGCGACATCAGCA
AACCAGAATGAGCAGAAGGAAGGGGATGGGGCGGGAAAGGGGGTGGTCGG
TTCGAAGCCTGCGAGGAAAGCCGCGAGCTGGATGCGGCAGAGACGAGGTG
TATTTGTCCCCGCTGTGCTCAGATGATCCGCTCTCTCATCGCTGCCGGGG
CCAACCCCAACATCACATCTAGGCAAGGCCTCACACCAATCGGGCTTGCC
GTCAACATGGGGTTTAGCGGTTGCCTGGCCGTTCTCTTGCGCTCCGGTGG
GTCTCCGCATTCTAATAACAGTAGTGGGCCCACCCTGGTCCAGTCGGCAT
TCCTCGAGCTCTACCCTACCTGCCTCGCGTTGCTCTTCCAAGCCGGGGTA
GCCACCGAGAACATGTTCGCGGACTCCGAGCCCTATTCGGCGGACCTGCT
AAAGCGCGTGACCACGAATTACAAGCTTGACACACCGGGGGGGCGCTGTC
AGCAAATTTTGCTCGTGGCCAAGGCGTACAATGCGCGCTCGTGGCAATGG
CCGTCGTCTGCCGCCATCGCGACATCAGCAAACCAGAATGAGCAGAAGGA
AGGGGATGGGGCGGGAAAGGGGGTGGTCGGTTCGAAGCCTGCGAGGAAAG
CCGCGAGCTGGATGCGGCAGAGACGAGGTGTATTTGTCCCCGCTGTGCTC
AGGTTTGTAAATAAAGCGGATGTGGGAAAATACCGTGATCGCCTCGAGAT
GAAGTGAGTTTGTAAATAAAGCGGATGTGGGAAAATACCGTGATCGCCTC
GAGATGAAGTGA
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