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Homology
BLAST of mRNA_E-fasciculatus_F_contig123.1772.1 vs. uniprot
Match: A0A6H5KAV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAV9_9PHAE) HSP 1 Score: 174 bits (442), Expect = 1.120e-50 Identity = 99/137 (72.26%), Postives = 112/137 (81.75%), Query Frame = 1
Query: 322 MKNREMEKAYKRERTSNNRLRHRELKRSTGRSDDGESVPAPAASQDRSVAVDGTLPQPSFGPNR-AGCGSGNVSGVRGERAEGAEELRVVERLVAGLIEQSLRPGSAVRQFQVPPALIPPTRFCVTEESTKRASPSA 729
MKNREMEKA++RER SN+RLRHR+L RSTGRSDDGES+PAPAAS+DR VAVDG L +PSFGPN AGCGSGN SGVRGE+AEGAEELRVVERLVAGL+EQSLRPG AVR Q + +P TR C E + + S A
Sbjct: 1 MKNREMEKAHERERASNSRLRHRDLNRSTGRSDDGESIPAPAASRDRCVAVDGVLSRPSFGPNLCAGCGSGNGSGVRGEKAEGAEELRVVERLVAGLLEQSLRPGFAVRHSQAAGSHLP-TRSCEGESNERAISTCA 136
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Hypothetical protein |
| Ec32 ortholog | Ec-17_001400.1 |
| Exons | 6 |
| Model size | 1068 |
| Cds size | 1068 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig123.1772.1 >prot_E-fasciculatus_F_contig123.1772.1 ID=prot_E-fasciculatus_F_contig123.1772.1|Name=mRNA_E-fasciculatus_F_contig123.1772.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=356bp
MEAELEGMLVGAWIHGDRTKLMLRVESLQRELSLIKSGRLTQREAFEAQK
KEFVRRLVDIKAEHERIVRELTSRATGEERRRTICEKRMQDLKGEVLLLK
EKLQVAAMKNREMEKAYKRERTSNNRLRHRELKRSTGRSDDGESVPAPAA
SQDRSVAVDGTLPQPSFGPNRAGCGSGNVSGVRGERAEGAEELRVVERLV
AGLIEQSLRPGSAVRQFQVPPALIPPTRFCVTEESTKRASPSAPSDHGGG
GSSRKEQEEKQQRNAVSAAGATKADVAQTSDSEPHTESLRDVQSQEKASS
EKETVNVDLALSRMHALTGMMRAQEEIETLLGQQLGELKHKQAEESKRMW
QLVTR* back to topmRNA from alignment at E-fasciculatus_F_contig123:10303..14019- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig123.1772.1 ID=mRNA_E-fasciculatus_F_contig123.1772.1|Name=mRNA_E-fasciculatus_F_contig123.1772.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3717bp|location=Sequence derived from alignment at E-fasciculatus_F_contig123:10303..14019- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGCCGAACTTGAAGGAATGCTGGTAGGAGCATGGATCCACGGAGA
TCGTACTAAGCTCATGCTACGGGTGAGTGGTTAGACGAGCCGAAAGCATG
CAGCTTTTGTAGCAATTTCAAACAATGGTTGATTTCTAATAAAGATCAAA
CGGCCTTTGCGATGTTCCTCTACATAATCTACATGGAGAGCTGTGTCTTG
ACCGCTGCCATTTGTGCTGCCGCCATATGCATGTTTACATGTTTACCGAA
TAACTCAGAGCAAAGGACGCCACCGTTATGATCGGAGCTGCTGCGGGTGT
CTTCTGGTATCAGAGATTTTGTGTTTTGAAATTCAAGCGGTCCGTCATCA
AGCACTTGTACGACCAGACTACGTACTAGTCAGTAGCCTTCAATTGTACC
GCCGTGTGGGTATGCATATGTGGACACGGGTATGTATACATGTGCCTGGA
ATTTACCGCTGCTAAATATATGTATACTTACTCGTCGATGCACCTGATGT
CTACAACAATTTTGAACTCTGCCGATCTCAGGTCGAATCATTACAACGAG
AGCTCTCGCTCATAAAATCTGGCCGACTAACGCAGCGCGAGGCCTTCGAA
GCGCAGGTTTGCCGAGGAAAATATCTGCTGTCATGTATCTAACCTGCGGG
TGATCAGTTGAAGTCGCCTTTGGACAAGGCGGAGACACCGCCGCGGGCGC
GGGGACTACTTGCTACGAAAATTTTGCAAAGAGTTTGCAACCACGGCATG
CCCGCCTCCCCTTCTTACCAGCCTTTCCGGCTTGCTGCCCTTGTTCCCTT
TGTCCGTCACAGACCATTACAGCAGTAGTCTCACGTGTTTGGCGTAATAT
TTGATCCGAAGAGGTTTGCCCGCGACTTTGCCCAAGTAGGCTATCCCTAT
ATTAGCCTTCACCGCGTTTGTATGTAGCACGGTACTTGTGAAGGACGCTT
CATCGCCTGTCGTTGGGGGTTCGCTCGGTAGTTTTTGTGTTTGTTCGTTG
TTTTCGTGTACCACTCTTGCGAAGAACAAACGGCAGACAGTATCTTCATC
TTGGATTCACTCAGAGAGCAAATGGATCAAGAAAACTTTTTATTCAAGTG
GTATCTGCGTACACTGCTGTTCTTCTGGGTGGACTTATGTGATGCAGTGC
CATAAGCATGATCTCGATACATGTAGAACTCCCTAGCATGCCGTATGAAT
ACCCGAGCATCCACACAGTCAGGGAATTCCGTAAGAATCATTATGCCATC
GGCGTAAAACCTATGCGCGGTAGATTTCCCGTTCAGATAGATAGGTGAGT
ACGTGCGCATAGGCACGGAATCAACCGCCTGGTGGCAGTGATCCCATCCC
AGTCCTTGAGTGACCGAGGCTTCTCGTCGCCTTGGTGGATGGACGGACAA
CGAAATACTTGCACGCTGAGCTTTTAGCGTGTGTGCGAACCGCATAGCCC
CAGCTGCCGTGCACGTCTGTACTCCATTGGATTGTGGCACACCATTCCGG
TTCCTGTACAGTGCCCGTCCCTATCCGATATACACAACCACCGCCCGTCA
TTGACGAGTTGTGGGTATCTGTTTTCCACGTAGCAGTAGCACGCGACTGG
TGTACGCAATCGTGTGTGTGCCGCTTCAAACACACCATTTCTACTTTTTC
TTCAACACAAAATCCACGCATTCGCGTGTTTTCCTCGCTCGTGGTTTGTA
TGCATGTGTTGTAACAGAAGAAGGAATTCGTCCGACGCCTGGTGGACATC
AAGGCAGAGCATGAGCGTATCGTGAGGGAGTTAACATCACGCGCGACGGG
AGAAGAGCGGCGAAGGACGATCTGCGAGAAACGAATGCAGGTAGTAGATG
GGAGGCCTGGTCGTCGGCGATCGCTTGGCCGGCCGTATTTCCTGTATGTG
GCAATACCAATCATCGATGTACCACGTTGTAGATCGGCGATACATACGCC
TTCACACAGAAAAGTCGAACTGAAGCAAGTACCGAAGCACGTACTCGCGC
GTTGCCCTTTCTAAACGAAACGGAAACCAGAGACATGAATAATGATGTGT
TGCGGTAACCGCAAGAAGACCGCCGGGCATATGAATGATCCATGCTTTCC
GGACGCGCACGTCTCTGGCGTGACTGTCAGTTTAGTAGCTAGCAGGACAC
ACCGCCTGCGGCGACTTTTCATTCCTGTTTCCAGTCACCACCGAGCAACT
CCACACGGGTAACCTTTATTAATTCGGCCGGCGTTGAATTGGCTGATTTT
GACATCGGTGAGCAGCGCTCGCACTACACATACCGACAAGGAATCCGTCG
GCACGCTATTAGCAGCCGGTGTGCTACCCCGGCACCGCCTCCTCTCCAAG
TGCGATCTATCTTGATTATTTCTATTCGCCATCATATGTTCCTGCATGGT
GTGTGTGTTCCAGGACCTGAAGGGTGAGGTTCTGCTTCTGAAGGAGAAGC
TTCAGGTTGCAGCGATGAAAAATAGGGAAATGGAGAAGGCGTATAAAAGG
TGCGCATGCCTCCGGCTTTTCGTCCCTGGTGATGTGGCCCTTGCCTGTCT
CGATATGTCCTTGGCCGTGTGTGCACAATGATCATTCAGGCACGCCATTT
AGTTACTACTAAGCTTGAGGAGGCGTCGTCGAATGTTGTCGATCGCATGT
TACGATCTTTGGGAAGCATGTCACAGCGAGTGAGGGCCAGGGAATGATAG
ACGACACGCATGACTCAGCTTTGGTACATGTGCTTGTGCTCGCCCATTTA
CATGTGCTTGTGCTCACCCATTCAACTAGGGAGAGAACAAGCAACAACCG
CTTGAGGCATCGCGAACTGAAACGATCCACCGGGCGTTCAGACGACGGCG
AAAGCGTACCAGCACCCGCTGCTAGCCAAGACCGTAGCGTTGCTGTCGAT
GGCACCTTGCCCCAACCTTCGTTCGGTCCTAATCGTGCCGGCTGCGGAAG
CGGCAACGTTTCTGGAGTTCGGGGGGAGAGGGCGGAAGGGGCGGAGGAGT
TACGGGTGGTGGAGAGGTTGGTGGCGGGGCTAATCGAGCAAAGCTTGAGG
CCTGGATCCGCCGTGCGACAGTTCCAGGTACCGCCGGCCCTCATTCCCCC
GACAAGGTTTTGTGTTACAGAAGAGAGTACCAAGAGAGCATCTCCAGTGA
GATGGGATTTTGTGGGCCCTTCACTTTGTTGGTTGTTGCAACCACTTCGT
TTGGCAACTCCACGTCCACCGCCGGATGCTACAATGTACGTGCAATTGCG
AGGCTGCTTGCAGCAGAACTCGGTCGGTATCTCTGGAGATGTGTGAGCAC
ATTCTAGCAGTAGATGCATGAAATTGTGAACATGTTTTCGAGCTCTCACT
GATGGAATGTACCACCCGGCAGAGTGCGCCTAGCGATCATGGTGGTGGTG
GCTCGTCGAGAAAGGAGCAAGAAGAGAAACAGCAGCGGAATGCCGTGTCG
GCTGCAGGGGCAACAAAAGCGGATGTGGCTCAAACATCGGACTCCGAACC
TCACACCGAAAGCTTGAGAGATGTACAGTCACAGGAGAAAGCCTCGAGTG
AAAAGGAGACGGTCAACGTCGACTTGGCACTATCAAGAATGCACGCGCTG
ACGGGCATGATGCGGGCACAGGAGGAAATCGAGACACTCCTCGGCCAACA
ACTTGGCGAGCTCAAGCACAAACAAGCCGAGGAGAGCAAACGCATGTGGC
AGCTCGTGACGAGGTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig123:10303..14019- >mRNA_E-fasciculatus_F_contig123.1772.1 ID=mRNA_E-fasciculatus_F_contig123.1772.1|Name=mRNA_E-fasciculatus_F_contig123.1772.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2136bp|location=Sequence derived from alignment at E-fasciculatus_F_contig123:10303..14019- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAGCCGAACTTGAAGGAATGCTGGTAGGAGCATGGATCCACGGAGA
TCGTACTAAGCTCATGCTACGGATGGAAGCCGAACTTGAAGGAATGCTGG
TAGGAGCATGGATCCACGGAGATCGTACTAAGCTCATGCTACGGGTCGAA
TCATTACAACGAGAGCTCTCGCTCATAAAATCTGGCCGACTAACGCAGCG
CGAGGCCTTCGAAGCGCAGGTCGAATCATTACAACGAGAGCTCTCGCTCA
TAAAATCTGGCCGACTAACGCAGCGCGAGGCCTTCGAAGCGCAGAAGAAG
GAATTCGTCCGACGCCTGGTGGACATCAAGGCAGAGCATGAGCGTATCGT
GAGGGAGTTAACATCACGCGCGACGGGAGAAGAGCGGCGAAGGACGATCT
GCGAGAAACGAATGCAGAAGAAGGAATTCGTCCGACGCCTGGTGGACATC
AAGGCAGAGCATGAGCGTATCGTGAGGGAGTTAACATCACGCGCGACGGG
AGAAGAGCGGCGAAGGACGATCTGCGAGAAACGAATGCAGGACCTGAAGG
GTGAGGTTCTGCTTCTGAAGGAGAAGCTTCAGGTTGCAGCGATGAAAAAT
AGGGAAATGGAGAAGGCGTATAAAAGGACCTGAAGGGTGAGGTTCTGCTT
CTGAAGGAGAAGCTTCAGGTTGCAGCGATGAAAAATAGGGAAATGGAGAA
GGCGTATAAAAGGGAGAGAACAAGCAACAACCGCTTGAGGCATCGCGAAC
TGAAACGATCCACCGGGCGTTCAGACGACGGCGAAAGCGTACCAGCACCC
GCTGCTAGCCAAGACCGTAGCGTTGCTGTCGATGGCACCTTGCCCCAACC
TTCGTTCGGTCCTAATCGTGCCGGCTGCGGAAGCGGCAACGTTTCTGGAG
TTCGGGGGGAGAGGGCGGAAGGGGCGGAGGAGTTACGGGTGGTGGAGAGG
TTGGTGGCGGGGCTAATCGAGCAAAGCTTGAGGCCTGGATCCGCCGTGCG
ACAGTTCCAGGTACCGCCGGCCCTCATTCCCCCGACAAGGTTTTGTGTTA
CAGAAGAGAGTACCAAGAGAGCATCTCCAGGAGAGAACAAGCAACAACCG
CTTGAGGCATCGCGAACTGAAACGATCCACCGGGCGTTCAGACGACGGCG
AAAGCGTACCAGCACCCGCTGCTAGCCAAGACCGTAGCGTTGCTGTCGAT
GGCACCTTGCCCCAACCTTCGTTCGGTCCTAATCGTGCCGGCTGCGGAAG
CGGCAACGTTTCTGGAGTTCGGGGGGAGAGGGCGGAAGGGGCGGAGGAGT
TACGGGTGGTGGAGAGGTTGGTGGCGGGGCTAATCGAGCAAAGCTTGAGG
CCTGGATCCGCCGTGCGACAGTTCCAGGTACCGCCGGCCCTCATTCCCCC
GACAAGGTTTTGTGTTACAGAAGAGAGTACCAAGAGAGCATCTCCAAGTG
CGCCTAGCGATCATGGTGGTGGTGGCTCGTCGAGAAAGGAGCAAGAAGAG
AAACAGCAGCGGAATGCCGTGTCGGCTGCAGGGGCAACAAAAGCGGATGT
GGCTCAAACATCGGACTCCGAACCTCACACCGAAAGCTTGAGAGATGTAC
AGTCACAGGAGAAAGCCTCGAGTGAAAAGGAGACGGTCAACGTCGACTTG
GCACTATCAAGAATGCACGCGCTGACGGGCATGATGCGGGCACAGGAGGA
AATCGAGACACTCCTCGGCCAACAACTTGGCGAGCTCAAGCACAAACAAG
CCGAGGAGAGCAAACGCATGTGGCAGCTCGTGACGAGGTGAAGTGCGCCT
AGCGATCATGGTGGTGGTGGCTCGTCGAGAAAGGAGCAAGAAGAGAAACA
GCAGCGGAATGCCGTGTCGGCTGCAGGGGCAACAAAAGCGGATGTGGCTC
AAACATCGGACTCCGAACCTCACACCGAAAGCTTGAGAGATGTACAGTCA
CAGGAGAAAGCCTCGAGTGAAAAGGAGACGGTCAACGTCGACTTGGCACT
ATCAAGAATGCACGCGCTGACGGGCATGATGCGGGCACAGGAGGAAATCG
AGACACTCCTCGGCCAACAACTTGGCGAGCTCAAGCACAAACAAGCCGAG
GAGAGCAAACGCATGTGGCAGCTCGTGACGAGGTGA back to top
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