mRNA_E-fasciculatus_F_contig123.1771.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig123.1771.1
Unique Name	mRNA_E-fasciculatus_F_contig123.1771.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

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BLAST of mRNA_E-fasciculatus_F_contig123.1771.1 vs. uniprot
Match: D7FKU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKU5_ECTSI)

HSP 1 Score: 445 bits (1145), Expect = 9.640e-153
Identity = 227/256 (88.67%), Postives = 236/256 (92.19%), Query Frame = 1

Query:    1 MDKALLGVDWRFLAHASDDEPGFSTAWLRQKSLKREADCREREYRNSILAGFANEFGMTSIFPSRRLDPSVDEDDAEGDDAEEEHDHVVRNTESPSISSRTVPGALLPHQDLPILPEDPPNITVVKAPALPALVAALKKGGVRVDDLQGGDSRHAEDTGSWDGVDLASSPCLQQYMVGNNIEDVESAAGNVDAQERLYGRPRTAQIPVRPSTPPTLLVYKPCMSIKVADNVPSELQAMSKLLEMKEKRIE--GPSS 762
            MDKALLGV+WRFLAHASDDEPGFSTAWL+QKSLKREADCREREYRN ILAGFANEFGMTSIFPSRRL+  VDEDDAEGDD EEEHDHVV N + PS SSRT PGA LPH+DLPILPEDPP  TVVK PALPALVAALKKGGVRVDDLQGGDSRHAEDTGSWDGVDLASSPCLQQYMVG+NIEDVESAAGNV  QER+YGRP TAQ+PVRPSTPPTLLVYKPC+SIKVADNVPSELQAMSKLLEMKEKR    GPSS
Sbjct:    1 MDKALLGVEWRFLAHASDDEPGFSTAWLQQKSLKREADCREREYRNGILAGFANEFGMTSIFPSRRLEQGVDEDDAEGDDVEEEHDHVVCNKKGPSTSSRTAPGASLPHRDLPILPEDPPISTVVKTPALPALVAALKKGGVRVDDLQGGDSRHAEDTGSWDGVDLASSPCLQQYMVGDNIEDVESAAGNVGVQERVYGRPSTAQVPVRPSTPPTLLVYKPCISIKVADNVPSELQAMSKLLEMKEKRPTDLGPSS 256

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig123.1771.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig123.1771.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
D7FKU5_ECTSI	9.640e-153	88.67	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig123	contig	E-fasciculatus_F_contig123:509..4841 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Ec32 ortholog description	expressed unknown protein
Ec32 ortholog	Ec-17_001420.1
Exons	10
Model size	1554
Cds size	1554
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig123.1771.1	prot_E-fasciculatus_F_contig123.1771.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig123 509..4841 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig123:509..4841-
coding sequence from alignment at E-fasciculatus_F_contig123:509..4841-

protein sequence of mRNA_E-fasciculatus_F_contig123.1771.1

>prot_E-fasciculatus_F_contig123.1771.1 ID=prot_E-fasciculatus_F_contig123.1771.1|Name=mRNA_E-fasciculatus_F_contig123.1771.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=518bp
MDKALLGVDWRFLAHASDDEPGFSTAWLRQKSLKREADCREREYRNSILA
GFANEFGMTSIFPSRRLDPSVDEDDAEGDDAEEEHDHVVRNTESPSISSR
TVPGALLPHQDLPILPEDPPNITVVKAPALPALVAALKKGGVRVDDLQGG
DSRHAEDTGSWDGVDLASSPCLQQYMVGNNIEDVESAAGNVDAQERLYGR
PRTAQIPVRPSTPPTLLVYKPCMSIKVADNVPSELQAMSKLLEMKEKRIE
GPSSSETTAPQPSSEVEGAFERSAMTRLKIGLPMKQLSPTRPKGSRSSRS
GGRAMRKKGPETSSEAPSPPTSLQSTPRDPANHRTPYGKAWYINPELWGL
GSSPQEDSEVLDQESDKADGAKQPLAHAKSMKERIPGLFSAIRFTKYIRQ
QGVRMPAHLESTDNAIKAEEARVRQRRQARTARQDQHGAEGDTPAEDQES
APAPKPTASRSKAWRARVDAAMVLKKERKRDPHEKTRERIDPSGTAPTDR
GRQEVGIRPASSTADDA*

mRNA from alignment at E-fasciculatus_F_contig123:509..4841-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig123.1771.1 ID=mRNA_E-fasciculatus_F_contig123.1771.1|Name=mRNA_E-fasciculatus_F_contig123.1771.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4333bp|location=Sequence derived from alignment at E-fasciculatus_F_contig123:509..4841- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACAAGGCTTTGCTTGGGGTAAGAAGAGAGGCATCAGAAAAACTGAA
AAACTCCCAAAAGATATCTCAATATTGCATAACACTCGGCCAACCGTTAC
TTGATGCCTAGTCTAGACTCCATGAGCAGTTTTTGTCCTAACCAGCTCTC
GCAAATATTCTCATGCAACACCGCAATGGAACCACCTCGTCGGTCGACTT
CCCTCTTCATCTATAGTCTATGGCCTTTGCTTCCCTCGCGAAAACATAAG
GTGGATTGGCGCTTCCTTGCACATGCCTCGGACGACGAGCCTGGCTTCTC
CACAGCCTGGTTGCGACAAAAATCTTTGAAGAGGGAGGCCGACTGCAGGG
AGCGGGAGTACCGAAACAGTATCTTGGCTGGGTTTGCCAATGAGTTCGGC
ATGACCAGCATTTTCCCGTCCCGCCGTCTCGACCCAAGCGTCGACGAAGA
TGATGCAGAAGGCGACGACGCGGAGGAGGAGCATGACCATGTCGTTCGCA
ATACAGAAAGCCCTTCTATTTCTTCGCGGACGGTGCCGGGTGCATTATTG
CCCCATCAAGATCTTCCAATATTACCCGAGGTGCGACTGCACTCGGCCGA
CTGTTCTAGTCTAAACGTCGAGCACATGCCGAAGCCACCACAGAATTCGT
TTGGCACGCTGGCGGTCAAAACGCACAGGTACAGAGCAAACGTTTATAAA
CACTTGCGAGGCACTGTCGGTTTTCGAGCGAAAATTTTTCTTGCTGCCTC
TCGCTCACGTACAACCTGACTCAGCTGCACTGCACTGTTAAATGCAACCT
ATAGTGATACCGACTCTTCGTGTGTTTGATAAAGTTGCTGCCGGACAGGT
AGGCGTAGTCTCTGCAAGATGCCATTTGTCAAGGTGGTAGATACCTAGAA
AAATTCGAGATAGAGGTATCGTGAACAGCACCGCCTTTCTAATTTCGATC
GGATCCGCCACCTTGATCGCGTTCGCGGTACCCCCGGCGTATGCACCTGC
GAATCACCTGAAGGACCCGCCAAATATCACCGTGGTCAAGGCACCCGCTC
TGCCAGCTCTTGTTGCTGCTCTCAAGAAAGGGGGAGTTCGTGTGGATGAC
CTACAGGTACACCAGAGTGTTAAAGTTTGATGTCTTTGTTACTTGAAGCT
CCTTGCAACAGCACGAGAGGCCAACGTGTTAACCTTGGGTCTCGGCGTAC
TTTGTCCATGCCCTCTGTGCGGCCGGGTACATGTAGGGTGGAGACTCAAG
GCATGCGGAAGACACAGGATCATGGGATGGCGTAGACTTGGCATCTTCTC
CTTGCTTACAGCAATACATGGTGGGAAACAACATCGAAGATGTCGAAAGC
GCTGCGGGCAACGTGGATGCACAAGAACGGTTGTACGGTCGACCACGCAC
GGCGCAAATCCCGGTCAGACCGAGCACGCCCCCGACACTTTTGGTTTACA
AGCCTTGCATGAGGTGGGTAGAGGCGCACCGAACGGGCAATATGGTGTGC
TCTCGACGGGTCCGCTCCGTTCGATCGCCGAAACTGCCAACTCTTTTCGT
TCTGTGTTCTGTTGCCGCACACTCCGCAGCATCAAGGTTGCCGACAACGT
GCCGAGCGAGCTTCAGGCCATGTCGAAACTGCTGGAAATGAAGGAAAAAC
GGTGAGTGTGTTTGGTACTTTGGACGCACGCAAGGGATAGCGCTGCCAGG
TTTTTCTACACTGTCTAGTGGGGATAGTTCTAACGTCTCAGAAGTCGTGA
CTGTGCGTTCCAAGGTAGATTATTGCTCGATTATGCAAGCATCGGCTTTG
TCCGTGCGAGGTCCCTCGCATATGGTAACAAACTGGAAACAGCATCTTCT
GTTGGAGCGCGGGACAAGTCAAGCCGTTCACCAGGTATGACTCGCCAACT
ACTTCATGAACTCTTGCTGACGCTCGCCAGCCCTCATTGTCTGCACCAAC
AGGATAGAGGGGCCATCGTCATCAGAAACGACTGCCCCTCAGCCTTCCAG
TGAGGTAGAAGGAGCGTTTGAAAGAAGCGCTATGACGAGACTGAAAATTG
GATTGCCCATGAAGCAACTGTCGCCGACACGCCCGAAAGGCTCTCGCAGC
AGGTATCAGCGTTTTTTTGTTGTTGTGTTCTTTTGACCGCATGACAGCAT
AAAAGAACACCAAGAACAATGTGACGAGATGTGGTGGTAGCCGACAATGC
AGCAGCAGTGGATACCCTGCAGATTTAAAACCCAAGACTCACCATACCAC
TCCAATCGAGGTTCCTTCAGATTTCGTTTGGGTTAAGAGAGGCGTTGGGG
AGTTTGACGGAAGTGTCACTGGGCCAGCCAATGAGTGCGTTTCATAAATT
TGCCTTCTACGAAACTTCTACGGTGCGCGGATTGATTGTTTCGTTGTAGA
GCTCAGAGAATGTCCGTCAACAGGGGGCACCATGCTGATCACTATTGATT
ATTGAAACAACTAGCAGGTCAGGAGGAAGAGCTATGAGAAAGAAAGGACC
GGAAACTTCAAGCGAAGCTCCCAGCCCACCAACATCTCTCCAAAGCACTC
CACGCGATCCGGTGGGCTCGTTTTCGCCATCTTGCTACCCCGTATGCATA
CTTGGTATGAGCAATGCTCTAGCATACGCAGCGCGCGTTTCGCACAAGTG
ACAAGTGAAGAGTATGTCAAGCATTCTTGGTGATCACCAAAACACTCCGT
TGGCATGATACACAAAGATCCGGACAAAGTTGTTGTACCTTGTCTGCCGT
TTCGTTAGCACATCACCTACACCTCAGCTATATAGCTAACTACGTTCAAA
TGCTTTGATGCATGTATGCCATTTCTCCACCTGGTTGGAGTACCGCAGGC
GAATCATCGGACACCATACGGCAAGGCTTGGTACATTAATCCAGAACTTT
GGGGCTTGGGATCCTCACCACAAGAAGACAGCGAGGTTCTTGACCAAGAA
AGCGACAAGGCGGACGGTGGGTTTTTCGATCATGTACACAAACAACATAG
ACGCTGATTCAAAGTGAGAGTGTGCACAACGATGGTTCTTGCCACAAATT
CTAATATCTTACACATGCATTCTTGCCTACAAATCTGGGACCAAGCTCTC
CATGGACAATCGATTGAAGTTCGATGTGAAAACGGTTCGTTGCTGAGAAA
TGACCTCCGTTGTCATAAACCCCTCTACTAGACTGATAGGAAATGCGCAC
CGTTGTCTCTGGTATTACGTTTTGTCTGTCTTGGCCTCTGCCAAGTACCC
TGGCATTGACTTACTTCTACGCCGTACGGCCGGGTTGTTTCTGTGAAAAA
CAATCATGTGTAGCGTCTAATACTTTCATGCGGCTTAAACCCATCACACC
TCAGGGGCGAAACAACCTCTGGCCCACGCCAAATCGATGAAGGAAAGGAT
CCCGGGCCTCTTCTCCGCCATTCGATTCACCAAATACATCCGCCAACAGG
TATGAAACTCATTCAAGGGAGGATATCCGTGGCAGAACTAAACAACTCTA
ACGTTTCTGCTCATCTCACCAACTCTGTACGCAGTCCAGTCTCTTTCCTG
CAGCCACCGTAGACAAGCTTCGGCCACGTAGAAGTATGCATAGAAAGCTT
ACTATCGAAAGACTCCCCTGCTTTCTTTTGAGGTGAAAGTCTTCCGCTTT
GGTCGCCATGGGGGCTCGCAATCCGATGCCCTCGGTAGCTACCTGTAGCT
TGATAAATTTTTGCGCCGAGATTTGAAGTCATGAACTCTGGCGAACCGAG
GGTTCGTGCATTCAGACCACGGGGGCGACCCGCTGAGCATTTGTGTAGTC
TGCCGTCGCAGGTTGGCGGATCTTTTCAAAAAAAGTTCGGTCAGGCCTTC
CCAACCATGGATACCTAGCGCAGCTTGAATCTGCTCCATGCGAGTAAACC
TACAAGAGCCATCGTTTATGTCCAGGATTCGCGTTTCTCTGACCCCGCCT
TGGGCCTACTCAACTTTCACTGCCCGGTGAAGGGTGTTCGTATGCCGGCA
CACCTCGAGAGCACCGACAACGCAATTAAAGCGGAGGAGGCAAGAGTGAG
GCAACGCCGGCAAGCTCGAACGGCTCGTCAAGACCAACATGGAGCCGAAG
GGGATACTCCAGCAGAAGACCAGGAGAGTGCCCCTGCGCCAAAGCCGACC
GCAAGCCGGAGCAAAGCATGGCGCGCCCGAGTGGACGCAGCCATGGTCTT
GAAGAAGGAAAGGAAACGGGACCCTCACGAAAAGACCCGGGAACGAATTG
ACCCAAGCGGCACGGCACCAACAGATCGGGGGCGACAAGAAGTGGGGATA
CGTCCGGCAAGCAGTACAGCTGATGATGCGTAG

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig123:509..4841-

>mRNA_E-fasciculatus_F_contig123.1771.1 ID=mRNA_E-fasciculatus_F_contig123.1771.1|Name=mRNA_E-fasciculatus_F_contig123.1771.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3108bp|location=Sequence derived from alignment at E-fasciculatus_F_contig123:509..4841- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACAAGGCTTTGCTTGGGATGGACAAGGCTTTGCTTGGGGTGGATTG
GCGCTTCCTTGCACATGCCTCGGACGACGAGCCTGGCTTCTCCACAGCCT
GGTTGCGACAAAAATCTTTGAAGAGGGAGGCCGACTGCAGGGAGCGGGAG
TACCGAAACAGTATCTTGGCTGGGTTTGCCAATGAGTTCGGCATGACCAG
CATTTTCCCGTCCCGCCGTCTCGACCCAAGCGTCGACGAAGATGATGCAG
AAGGCGACGACGCGGAGGAGGAGCATGACCATGTCGTTCGCAATACAGAA
AGCCCTTCTATTTCTTCGCGGACGGTGCCGGGTGCATTATTGCCCCATCA
AGATCTTCCAATATTACCCGAGGTGGATTGGCGCTTCCTTGCACATGCCT
CGGACGACGAGCCTGGCTTCTCCACAGCCTGGTTGCGACAAAAATCTTTG
AAGAGGGAGGCCGACTGCAGGGAGCGGGAGTACCGAAACAGTATCTTGGC
TGGGTTTGCCAATGAGTTCGGCATGACCAGCATTTTCCCGTCCCGCCGTC
TCGACCCAAGCGTCGACGAAGATGATGCAGAAGGCGACGACGCGGAGGAG
GAGCATGACCATGTCGTTCGCAATACAGAAAGCCCTTCTATTTCTTCGCG
GACGGTGCCGGGTGCATTATTGCCCCATCAAGATCTTCCAATATTACCCG
AGGACCCGCCAAATATCACCGTGGTCAAGGCACCCGCTCTGCCAGCTCTT
GTTGCTGCTCTCAAGAAAGGGGGAGTTCGTGTGGATGACCTACAGGACCC
GCCAAATATCACCGTGGTCAAGGCACCCGCTCTGCCAGCTCTTGTTGCTG
CTCTCAAGAAAGGGGGAGTTCGTGTGGATGACCTACAGGGTGGAGACTCA
AGGCATGCGGAAGACACAGGATCATGGGATGGCGTAGACTTGGCATCTTC
TCCTTGCTTACAGCAATACATGGTGGGAAACAACATCGAAGATGTCGAAA
GCGCTGCGGGCAACGTGGATGCACAAGAACGGTTGTACGGTCGACCACGC
ACGGCGCAAATCCCGGTCAGACCGAGCACGCCCCCGACACTTTTGGTTTA
CAAGCCTTGCATGAGGGTGGAGACTCAAGGCATGCGGAAGACACAGGATC
ATGGGATGGCGTAGACTTGGCATCTTCTCCTTGCTTACAGCAATACATGG
TGGGAAACAACATCGAAGATGTCGAAAGCGCTGCGGGCAACGTGGATGCA
CAAGAACGGTTGTACGGTCGACCACGCACGGCGCAAATCCCGGTCAGACC
GAGCACGCCCCCGACACTTTTGGTTTACAAGCCTTGCATGAGCATCAAGG
TTGCCGACAACGTGCCGAGCGAGCTTCAGGCCATGTCGAAACTGCTGGAA
ATGAAGGAAAAACGCATCAAGGTTGCCGACAACGTGCCGAGCGAGCTTCA
GGCCATGTCGAAACTGCTGGAAATGAAGGAAAAACGGATAGAGGGGCCAT
CGTCATCAGAAACGACTGCCCCTCAGCCTTCCAGTGAGGTAGAAGGAGCG
TTTGAAAGAAGCGCTATGACGAGACTGAAAATTGGATTGCCCATGAAGCA
ACTGTCGCCGACACGCCCGAAAGGCTCTCGCAGCAGGATAGAGGGGCCAT
CGTCATCAGAAACGACTGCCCCTCAGCCTTCCAGTGAGGTAGAAGGAGCG
TTTGAAAGAAGCGCTATGACGAGACTGAAAATTGGATTGCCCATGAAGCA
ACTGTCGCCGACACGCCCGAAAGGCTCTCGCAGCAGCAGGTCAGGAGGAA
GAGCTATGAGAAAGAAAGGACCGGAAACTTCAAGCGAAGCTCCCAGCCCA
CCAACATCTCTCCAAAGCACTCCACGCGATCCGCAGGTCAGGAGGAAGAG
CTATGAGAAAGAAAGGACCGGAAACTTCAAGCGAAGCTCCCAGCCCACCA
ACATCTCTCCAAAGCACTCCACGCGATCCGGCGAATCATCGGACACCATA
CGGCAAGGCTTGGTACATTAATCCAGAACTTTGGGGCTTGGGATCCTCAC
CACAAGAAGACAGCGAGGTTCTTGACCAAGAAAGCGACAAGGCGGACGGC
GAATCATCGGACACCATACGGCAAGGCTTGGTACATTAATCCAGAACTTT
GGGGCTTGGGATCCTCACCACAAGAAGACAGCGAGGTTCTTGACCAAGAA
AGCGACAAGGCGGACGGGGCGAAACAACCTCTGGCCCACGCCAAATCGAT
GAAGGAAAGGATCCCGGGCCTCTTCTCCGCCATTCGATTCACCAAATACA
TCCGCCAACAGGGGCGAAACAACCTCTGGCCCACGCCAAATCGATGAAGG
AAAGGATCCCGGGCCTCTTCTCCGCCATTCGATTCACCAAATACATCCGC
CAACAGGGTGTTCGTATGCCGGCACACCTCGAGAGCACCGACAACGCAAT
TAAAGCGGAGGAGGCAAGAGTGAGGCAACGCCGGCAAGCTCGAACGGCTC
GTCAAGACCAACATGGAGCCGAAGGGGATACTCCAGCAGAAGACCAGGAG
AGTGCCCCTGCGCCAAAGCCGACCGCAAGCCGGAGCAAAGCATGGCGCGC
CCGAGTGGACGCAGCCATGGTCTTGAAGAAGGAAAGGAAACGGGACCCTC
ACGAAAAGACCCGGGAACGAATTGACCCAAGCGGCACGGCACCAACAGAT
CGGGGGCGACAAGAAGTGGGGATACGTCCGGCAAGCAGTACAGCTGATGA
TGCGTAGGGTGTTCGTATGCCGGCACACCTCGAGAGCACCGACAACGCAA
TTAAAGCGGAGGAGGCAAGAGTGAGGCAACGCCGGCAAGCTCGAACGGCT
CGTCAAGACCAACATGGAGCCGAAGGGGATACTCCAGCAGAAGACCAGGA
GAGTGCCCCTGCGCCAAAGCCGACCGCAAGCCGGAGCAAAGCATGGCGCG
CCCGAGTGGACGCAGCCATGGTCTTGAAGAAGGAAAGGAAACGGGACCCT
CACGAAAAGACCCGGGAACGAATTGACCCAAGCGGCACGGCACCAACAGA
TCGGGGGCGACAAGAAGTGGGGATACGTCCGGCAAGCAGTACAGCTGATG
ATGCGTAG