mRNA_E-fasciculatus_F_contig123.1774.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig123.1774.1
Unique NamemRNA_E-fasciculatus_F_contig123.1774.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig123.1774.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig123contigE-fasciculatus_F_contig123:20915..21318 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size404
Cds size336
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927736.5609434-UTR-E-fasciculatus_F_contig123:20914..209821622927736.5609434-UTR-E-fasciculatus_F_contig123:20914..20982Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig123 20915..20982 +
1695995672.3754144-UTR-E-fasciculatus_F_contig123:20914..209821695995672.3754144-UTR-E-fasciculatus_F_contig123:20914..20982Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig123 20915..20982 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927736.5743556-CDS-E-fasciculatus_F_contig123:20982..213181622927736.5743556-CDS-E-fasciculatus_F_contig123:20982..21318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 20983..21318 +
1695995672.3854907-CDS-E-fasciculatus_F_contig123:20982..213181695995672.3854907-CDS-E-fasciculatus_F_contig123:20982..21318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig123 20983..21318 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig123.1774.1prot_E-fasciculatus_F_contig123.1774.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig123 20983..21318 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig123.1774.1

>prot_E-fasciculatus_F_contig123.1774.1 ID=prot_E-fasciculatus_F_contig123.1774.1|Name=mRNA_E-fasciculatus_F_contig123.1774.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=112bp
MERQVHAFTLGQVSPTFGALSGCWSYRPPLENLLGLWYPAACRYFAQLTN
MILHTLRRSLHFTFATVFASASLRSSMAHVKLLQTAKRITTIRPLKLLRV
LTSLIKYWSTFS
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mRNA from alignment at E-fasciculatus_F_contig123:20915..21318+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig123.1774.1 ID=mRNA_E-fasciculatus_F_contig123.1774.1|Name=mRNA_E-fasciculatus_F_contig123.1774.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=404bp|location=Sequence derived from alignment at E-fasciculatus_F_contig123:20915..21318+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGAGAGAAACCATAGGCGCAAGGTATGCAAATCACATGAGATGCCACA
CGCAAACGCAGAACAGGAATGGAACGCCAAGTACACGCCTTTACTCTTGG
TCAAGTTTCTCCAACTTTTGGCGCTCTCAGCGGGTGTTGGTCATACAGAC
CGCCTCTGGAGAATCTACTTGGTTTGTGGTACCCAGCTGCATGTCGTTAT
TTCGCACAGTTGACCAACATGATACTGCATACCCTACGAAGGTCACTACA
CTTCACGTTTGCAACAGTGTTCGCGAGCGCTAGTTTACGCTCAAGCATGG
CCCACGTAAAGCTATTGCAGACGGCGAAGCGGATAACAACTATTCGCCCA
CTAAAACTGCTTCGTGTTCTTACCTCTCTTATCAAATACTGGTCAACTTT
TTCA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig123:20915..21318+

>mRNA_E-fasciculatus_F_contig123.1774.1 ID=mRNA_E-fasciculatus_F_contig123.1774.1|Name=mRNA_E-fasciculatus_F_contig123.1774.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=672bp|location=Sequence derived from alignment at E-fasciculatus_F_contig123:20915..21318+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAACGCCAAGTACACGCCTTTACTCTTGGTCAAGTTTCTCCAACTTT
TGGCGCTCTCAGCGGGTGTTGGTCATACAGACCGCCTCTGGAGAATCTAC
TTGGTTTGTGGTACCCAGCTGCATGTCGTTATTTCGCACAGTTGACCAAC
ATGATACTGCATACCCTACGAAGGTCACTACACTTCACGTTTGCAACAGT
GTTCGCGAGCGCTAGTTTACGCTCAAGCATGGCCCACGTAAAGCTATTGC
AGACGGCGAAGCGGATAACAACTATTCGCCCACTAAAACTGCTTCGTGTT
CTTACCTCTCTTATCAAATACTGGTCAACTTTTTCAATGGAACGCCAAGT
ACACGCCTTTACTCTTGGTCAAGTTTCTCCAACTTTTGGCGCTCTCAGCG
GGTGTTGGTCATACAGACCGCCTCTGGAGAATCTACTTGGTTTGTGGTAC
CCAGCTGCATGTCGTTATTTCGCACAGTTGACCAACATGATACTGCATAC
CCTACGAAGGTCACTACACTTCACGTTTGCAACAGTGTTCGCGAGCGCTA
GTTTACGCTCAAGCATGGCCCACGTAAAGCTATTGCAGACGGCGAAGCGG
ATAACAACTATTCGCCCACTAAAACTGCTTCGTGTTCTTACCTCTCTTAT
CAAATACTGGTCAACTTTTTCA
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