mRNA_E-fasciculatus_F_contig12291.1766.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12291.1766.1
Unique NamemRNA_E-fasciculatus_F_contig12291.1766.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: D7FHW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW1_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 1.680e-153
Identity = 219/237 (92.41%), Postives = 221/237 (93.25%), Query Frame = 1
Query:    1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLASPEQ 711
            MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQ               IYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDL HFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAH+LC+QLASPEQ
Sbjct:    1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQ---------------IYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLASPEQ 222          
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A6H5K8J3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J3_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 4.510e-63
Identity = 117/144 (81.25%), Postives = 118/144 (81.94%), Query Frame = 1
Query:  280 MTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLASPEQ 711
            MTAEAVRVAIEEAGVAEPVFDQ                         ILARVARLLEL ESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAH+LCRQLASPEQ
Sbjct:    1 MTAEAVRVAIEEAGVAEPVFDQ-------------------------ILARVARLLELTESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCRQLASPEQ 119          
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A0G4EAV3_VITBC (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EAV3_VITBC)

HSP 1 Score: 192 bits (488), Expect = 1.640e-52
Identity = 103/236 (43.64%), Postives = 150/236 (63.56%), Query Frame = 1
Query:    1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTG--LAFLPDHTEPLTGFPSSA-FPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLA 699
            ++D DA+RGP +K+ IK R L+Q++SPGS  YLY+ CLR DD+ +RES+PYV +M  +SGY +C+               I+ +E+ V+V++R+T EA RV +E AG  EP++ Q     L FLPD+     G P+++ F   +L  V + L++  ++   F+ VT + E RPRP+Y ST  QIGL+K  ++PDLV  LLP  + A  +RFLR+W+L PP YRLADS   LC  L+
Sbjct:  172 LSDADAERGPPSKR-IKRRVLAQIVSPGSSTYLYDLCLRADDVGYRESRPYVALMGTASGYSMCE---------------IFIEEKFVRVADRLTQEAARVKVETAGAVEPIYMQDVSELLPFLPDYRITFKGHPTASHFHTAVLRDVCKNLQINPAE---FQVVTGTDEDRPRPLYTSTVTQIGLIKTSSIPDLVLSLLPDNHAAHSNRFLRRWILSPPPYRLADSMRDLCTALS 388          
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A836CI19_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI19_9STRA)

HSP 1 Score: 165 bits (418), Expect = 4.030e-43
Identity = 113/292 (38.70%), Postives = 137/292 (46.92%), Query Frame = 1
Query:    1 MNDVDAQRGPSAKKGIKE--------------RALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCG------------------------ACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFP-----------------SSAFPGQILARVARLLELAESDLKHFRTVTRSPE----GRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLA 699
            +ND DA         IKE              R L+QV++PGSP Y Y+ CLRTDD+ F E +PYVGV + + G+ +                                       A +Y D R  +VSERMT EA+R A+E  G AEP+      L  + D   P  G                      F   +L RV  +LELA  +   F TV RS      GRPRPVY STALQIGLL N NVPDL+P LLP GYP  C RFLR+WLL PP + LAD+   LCR  A
Sbjct:  440 LNDADALGDGGRSGRIKEXXXXXXXXXXXGPRRVLAQVVTPGSPTYYYDACLRTDDVEFAECRPYVGVARGAGGFTMVXXXXXXXXXXXXXXXXXXXXVKSRXXXXXXXXXXXXXXAEVYADARSARVSERMTEEALRAALEAGGAAEPL------LIGVGDEKPPQGGTAXXXXXXXXXGRVRYFGGEEGFVKAVLGRVGSILELAGGESGAF-TVARSQRAREAGRPRPVYLSTALQIGLLPNPNVPDLIPRLLPRGYPGHCARFLRRWLLSPPPHALADAMAELCRACA 724          
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A4D9CWC2_9STRA (DNA mismatch repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWC2_9STRA)

HSP 1 Score: 136 bits (343), Expect = 4.280e-33
Identity = 93/250 (37.20%), Postives = 140/250 (56.00%), Query Frame = 1
Query:    1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMK-DSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGT--GL--AFLP-----DHTEPLTGFPSSAFPGQILARVARLLEL-AESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPA-GYPAA---CHRFLRKWLLLPPSYRLADSAHSLCRQLASP 705
            ++D+D+    ++K  +K R LSQ++SPG+  YLY+ CLR DD+ + E++P++G++   S+GY L +               ++ D +  +++E +T E V++ +   G+AEP++ Q    GL    LP     +  E      S +F   ++  + R LE+ A +D  H R V      RPRP+  +TALQIGL+ N  VPDLVP LLPA   P       RFLR+WLL PP Y LAD+  +LCR LA P
Sbjct:  249 ISDLDSASPRTSK--LKSRLLSQIVSPGASTYLYDCCLRPDDVEYPENRPFLGLLNLPSNGYTLVE---------------VHVDAQTARITEGLTEEGVKMMLLAGGMAEPLYTQAVERGLLRVLLPGGGEVERRELFGHVDSRSFYQALVQALGRDLEIEALADQVHVR-VAPPLHSRPRPIPLATALQIGLVANSAVPDLVPHLLPAHALPLLRVHSSRFLRRWLLTPPPYHLADAMQALCRHLARP 480          
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A7S3WA61_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WA61_EMIHU)

HSP 1 Score: 117 bits (292), Expect = 1.060e-26
Identity = 83/230 (36.09%), Postives = 110/230 (47.83%), Query Frame = 1
Query:   40 KGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLA------FLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGR---PRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLAS 702
            KGIKER LSQVLS GSP YL++ CL    I +   +PY  + K + GY L       +H        ++ DER   V  R++  A+R  +     A P+   G+  A      +LP     L    +S      +A VA  ++L   D   F     SP GR   PRPVY +TA Q+GLL    +PDL   LLP   PA     LR+ LLLPP   +AD+  S C  L +
Sbjct:  133 KGIKERRLSQVLSAGSPTYLHDRCLSPHPIDYSAPRPYAALAKAADGYTL-------VH--------VFVDERTYHVHRRLSLPALRSLLAARPHAPPLLLGGSADAASSAASWLPAERRRLAVKSASRLAAAAVAHVAAEVQL---DAATFSAAPSSPAGRHAPPRPVYVTTASQVGLLPAAGIPDLPRALLPRTAPAESVELLRRLLLLPPRPAIADALRSACEALGA 344          
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A9SXU2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SXU2_PHYPA)

HSP 1 Score: 91.3 bits (225), Expect = 1.950e-17
Identity = 77/247 (31.17%), Postives = 116/247 (46.96%), Query Frame = 1
Query:   10 VDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTD-DISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAI----------------EEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLA 699
            V+  +GP AK  +KER ++    PGSP Y+Y G +  D D+ F E  P +G+ +   GY       CLI  L               V + +T EAV   +                + AG+A+  + +G GL +     +    +      G ++++V  L +L   D + FR +   P  RPRP+Y STA QIG+L    VP L+  LLP    + C  ++R  LL PP +R+AD   + CR+LA
Sbjct:  254 VEEVQGPQAKGHLKERFVAGHAHPGSP-YVY-GLVSADVDLEFPEPVPVMGISRSRRGY-------CLISVL--------EMMHSFSVEDALTEEAVVAKLRSRQCQQLFMHRSLRRDTAGIAQ--WGEG-GLLYGECQKKQQEWYDDDPVDG-LISKVRELFDL--DDDQEFREIVVPPGERPRPLYVSTASQIGILPTAGVPSLLMVLLPPEANSLCTSYVRNLLLHPPPHRVADCIQAACRKLA 477          
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A1L7NZY2_PHYPA (MutS homolog 1B n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A1L7NZY2_PHYPA)

HSP 1 Score: 91.3 bits (225), Expect = 2.180e-17
Identity = 77/247 (31.17%), Postives = 116/247 (46.96%), Query Frame = 1
Query:   10 VDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTD-DISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAI----------------EEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLA 699
            V+  +GP AK  +KER ++    PGSP Y+Y G +  D D+ F E  P +G+ +   GY       CLI  L               V + +T EAV   +                + AG+A+  + +G GL +     +    +      G ++++V  L +L   D + FR +   P  RPRP+Y STA QIG+L    VP L+  LLP    + C  ++R  LL PP +R+AD   + CR+LA
Sbjct:  254 VEEVQGPQAKGHLKERFVAGHAHPGSP-YVY-GLVSADVDLEFPEPVPVMGISRSRRGY-------CLISVL--------EMMHSFSVEDALTEEAVVAKLRSRQCQQLFMHRSLRRDTAGIAQ--WGEG-GLLYGECQKKQQEWYDDDPVDG-LISKVRELFDL--DDDQEFREIVVPPGERPRPLYVSTASQIGILPTAGVPSLLMVLLPPEANSLCTSYVRNLLLHPPPHRVADCIQAACRKLA 477          
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A7S3HJJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJJ9_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 2.000e-14
Identity = 55/148 (37.16%), Postives = 77/148 (52.03%), Query Frame = 1
Query:  298 RVAIEEAGVAEPVFDQ--GTG-LAFLP-----DHT-EPLTGFPSSAFPGQILARVARLLELAESDLK-----HFRTVTRSPEGRPR-----------PVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLA 666
            R  +   G  EP++ Q   TG LAFL      +HT E ++G+  + FP Q+L R++R +E+   +++        T++                   P+Y STALQIGL+ N NVPDL+P LLP    A   RFLRKWLL PP   +A
Sbjct:    1 RSLLASTGHIEPIYTQDCSTGDLAFLTHISPGEHTYEKMSGYSEADFPQQVLRRLSRRMEINVDNIRVCNRNELNTLSSXXXXXXXXXXASVITPLMPIYTSTALQIGLIANNNVPDLIPSLLPTRAGAYSSRFLRKWLLNPPPAHIA 148          
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A5J4XCK7_9CHLO (Mitochondrial-targeted muts 1 (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XCK7_9CHLO)

HSP 1 Score: 73.6 bits (179), Expect = 1.050e-11
Identity = 69/246 (28.05%), Postives = 108/246 (43.90%), Query Frame = 1
Query:   34 AKKGIKERALSQVLSPGSPNYLYEGCL-RTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVF---------DQGTGLAFLPDHTEPLTGFPSSAFPGQI--------LARVARLLELAESDLK-----HFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAAC-HRFLRKWLLLPPSYRLADSAHSLCRQLA 699
            A+  +K R +  V++P  P YLY     R+D   F+ES P +G+     GY + +     +  L C            QV+E +T +AV   + + G+  P++         D+    + +    E      S  F  Q+           V  LL L + +L      +F  VT +   RP+PVY STA Q+G+ K   V  L+  LLP    +    R+LR+ LLLPP   +A S  + C+ L+
Sbjct:   14 ARTKMKNRFIGGVVTPAQPQYLYSMMEDRSDAHDFQESPPILGIAAAVGGYKVMEVD---VDMLTC------------QVTEGLTEDAVSARLHQGGLVPPLYLHSSIHARQDRQISESTVEAEWEQRV---SQLFRSQVGLVKKYSDAEAVPGLLNLVKMELGLSTGVNFTQVTTAATDRPKPVYKSTACQLGIHKTAGVWPLLDSLLPPTPTSLLVRRWLRRLLLLPPPTEVAKSIRTACQFLS 241          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FHW1_ECTSI1.680e-15392.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8J3_9PHAE4.510e-6381.25DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A0G4EAV3_VITBC1.640e-5243.64DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
A0A836CI19_9STRA4.030e-4338.70AP2/ERF domain-containing protein n=1 Tax=Tribonem... [more]
A0A4D9CWC2_9STRA4.280e-3337.20DNA mismatch repair protein n=2 Tax=Monodopsidacea... [more]
A0A7S3WA61_EMIHU1.060e-2636.09Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A9SXU2_PHYPA1.950e-1731.17Predicted protein n=1 Tax=Physcomitrium patens Tax... [more]
A0A1L7NZY2_PHYPA2.180e-1731.17MutS homolog 1B n=1 Tax=Physcomitrium patens TaxID... [more]
A0A7S3HJJ9_9STRA2.000e-1437.16Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A5J4XCK7_9CHLO1.050e-1128.05Mitochondrial-targeted muts 1 (Fragment) n=1 Tax=T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12291contigE-fasciculatus_F_contig12291:290..3774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score437.2
Seed ortholog evalue4.9e-120
Seed eggNOG ortholog2880.D7FHW1
Preferred nameMSH6
KEGG koko:K08737
KEGG Pathwayko01524,ko03430,ko05200,ko05210,map01524,map03430,map05200,map05210
KEGG ModuleM00295
GOsGO:0000003,GO:0000166,GO:0000217,GO:0000400,GO:0000403,GO:0000404,GO:0000406,GO:0000710,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0008094,GO:0008144,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010556,GO:0010558,GO:0010605,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019219,GO:0019222,GO:0022402,GO:0022414,GO:0030554,GO:0030983,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032135,GO:0032137,GO:0032300,GO:0032301,GO:0032302,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0035639,GO:0036094,GO:0036297,GO:0042623,GO:0043111,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043570,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045005,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051171,GO:0051172,GO:0051276,GO:0051321,GO:0051716,GO:0060255,GO:0061982,GO:0065007,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0090329,GO:0097159,GO:0097367,GO:1901265,GO:1901360,GO:1901363,GO:1901576,GO:1903046,GO:1990391,GO:2000104,GO:2000112,GO:2000113
EggNOG free text desc.mismatched DNA binding
EggNOG OGsCOG0249@1,KOG0217@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-00_000640.1
Exons6
Model size711
Cds size711
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12291.1766.1prot_E-fasciculatus_F_contig12291.1766.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12291 290..3774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927735.3370135-CDS-E-fasciculatus_F_contig12291:289..3581622927735.3370135-CDS-E-fasciculatus_F_contig12291:289..358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 290..358 +
1695995672.0994432-CDS-E-fasciculatus_F_contig12291:289..3581695995672.0994432-CDS-E-fasciculatus_F_contig12291:289..358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 290..358 +
1622927735.6729922-CDS-E-fasciculatus_F_contig12291:840..10111622927735.6729922-CDS-E-fasciculatus_F_contig12291:840..1011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 841..1011 +
1695995672.1124735-CDS-E-fasciculatus_F_contig12291:840..10111695995672.1124735-CDS-E-fasciculatus_F_contig12291:840..1011Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 841..1011 +
1622927735.688811-CDS-E-fasciculatus_F_contig12291:1916..20211622927735.688811-CDS-E-fasciculatus_F_contig12291:1916..2021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 1917..2021 +
1695995672.130207-CDS-E-fasciculatus_F_contig12291:1916..20211695995672.130207-CDS-E-fasciculatus_F_contig12291:1916..2021Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 1917..2021 +
1622927735.9769056-CDS-E-fasciculatus_F_contig12291:2703..27781622927735.9769056-CDS-E-fasciculatus_F_contig12291:2703..2778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 2704..2778 +
1695995672.1413486-CDS-E-fasciculatus_F_contig12291:2703..27781695995672.1413486-CDS-E-fasciculatus_F_contig12291:2703..2778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 2704..2778 +
1622927736.2017357-CDS-E-fasciculatus_F_contig12291:3126..32461622927736.2017357-CDS-E-fasciculatus_F_contig12291:3126..3246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 3127..3246 +
1695995672.1514335-CDS-E-fasciculatus_F_contig12291:3126..32461695995672.1514335-CDS-E-fasciculatus_F_contig12291:3126..3246Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 3127..3246 +
1622927736.213248-CDS-E-fasciculatus_F_contig12291:3603..37741622927736.213248-CDS-E-fasciculatus_F_contig12291:3603..3774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 3604..3774 +
1695995672.1602592-CDS-E-fasciculatus_F_contig12291:3603..37741695995672.1602592-CDS-E-fasciculatus_F_contig12291:3603..3774Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12291 3604..3774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12291.1766.1

>prot_E-fasciculatus_F_contig12291.1766.1 ID=prot_E-fasciculatus_F_contig12291.1766.1|Name=mRNA_E-fasciculatus_F_contig12291.1766.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=237bp
MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKP
YVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVR
VAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLE
LAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAG
YPAACHRFLRKWLLLPPSYRLADSAHSLCRQLASPEQ
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mRNA from alignment at E-fasciculatus_F_contig12291:290..3774+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12291.1766.1 ID=mRNA_E-fasciculatus_F_contig12291.1766.1|Name=mRNA_E-fasciculatus_F_contig12291.1766.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3485bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12291:290..3774+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACGACGTCGACGCGCAGAGAGGACCGAGCGCCAAGAAGGGCATCAA GGAGAGGGCTCTGTCGCAGGTGACAAGACAATATAGATACGGATGAAAAA AAGAGCGTTGGGTTTGTTCCCCCTCGTCCCGTGGTTGCTGTGCTTTTGCT CTGCTTTGCTGTGCTTTACGGTGCTGTTTTGTGTGTAGTTTGTTTGCTTT GCCGAAAAGGGCGTCCCGGGCAAGGGATCTGTCGCACGTGCACATAGTGA ACCCAAACACCGGTTCCTAAGCTTCATGTGTTGGTGTTGGTGTTGCCTTT TGTTTGTTTGGCATCGACCGCCCTGACCGGCTATTGTAGCTTCTGGGGTA ACGAAAAGGACGCGGCACGCGTTCGAGTCCACGGTGCATCTGTGTATTTT GCTGCGCCGGTCTTGCGCTGTCGAGCTTGTTGCGGCAGGTACGTACCATT TTTCACTAGACACCCGGCCATCTTTTCATCCTTTTACTTTCGGTGTATCT GTTTGCCGACATTTTTGCGCGTCTACTGTGTGCTACGTTTTGTGCCATCA GGTTTTGTCGCCCGGCAGCCCGAACTACCTCTACGAGGGCTGCCTGAGGA CGGACGACATCAGCTTCCGAGAGTCAAAGCCGTACGTGGGGGTGATGAAG GATAGCTCCGGTTACCTCCTCTGCCAGGCGAGCTGCTGTCTCATTCATGC CTTGTGTTGTTGTGGTGCCTGTGTGGTCGATGGTCTAATAGCTAAGGCAT GCAAAACAGGAGCACTCCAGCCCCCCCCCAAAAAGAAAAAACGCGAAGAT TTGCAGCCGAAACATCCCGGGTGAATCACCTACCGCGCACAGAGTGTTTC TGGTTTGGTAGACGTGTTGCTGAGTCGGAGTTTTCAACGCCAACTAGTGC CGAGGACATCTCGGCAAGTCTGTGATGCGTCTTTGTGGCTCCGAAATGTG CCTCCCGTACGTTAGCTCTTGGGGTGCAACCTTGCTGGCGCTTGGATCCA ATCTTTCGGCCTTCTCGTGGTACTGTTGAGTCTCAACAAGCTTTTTCATA TTTTTTCTTCATACAACACAACTTTTTGCTTGTGTGATTGACCTTCGATG GGACACCGCACTGCTCCTTTCCGGCAGGAGTAAGCCGTGTTCAACCGCAT TGCCGACACAACCACAGGTCGTACTCGCAGTGCCGTATGCCTACCTTCCC ATCGTCGTCTCATGCACCATGTCGTGCACCATGCATCTACAAACCGTCCT GACGTCTTGTACTCTATCGAAAAATGTTCTTCATGCCCTTCGGGTCCATT TGTTTTTTAGTACCTTTTTTAGGGAAAGTTAAAGTGAGCCTGTGACCACG GGAATCGACCGCTTGGTGAAGTGGTAGATCAGCAAGGACAGGAAGTACTT GACACAGAGATCGGAACGGTTTTTAATGTGAAGACAACAACAACAACAAC ATGTGCTTCTTGTTGTCACGAATCGGACCGTTTCTTATCTTATCTTATCT TATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCTTATCT TATATTATATTATATTTTCTTATCTTATCTTATCTTATCTTATCGTATCT TATCTTATCTTATCTTATCTTATTTAGATCTACCCGGACGAGAGGGAGGT ACAGGTGTCCGAGAGAATGACGGCGGAGGCGGTGAGGGTCGCCATAGAGG AGGCCGGGGTCGCCGAGCCCGTGTTCGACCAGGTAGGTCCACCGCAGCAG ACATGCCTGCCTCCTACGGCTGTTGCCGTTGTCTAGTCTCTACGTGGCGG GTATCTAGGTACAATACACGTCCTTCGTATGTCTAGTTTGACTGCAGGTA TTATTTGAGGGGAAGCTGCATTAGTCCAGATAGCATGGGCCTCACAAACC GGCTGGCCCATGGAGAGCGTTGTGTGAGGTGCCTTCTGTTTATTTGTTTC CCTGCTGCCCCAGTTTTCCCTCAGAACGTTTTCTGCTACTAGTATTTGAT TTCAAATGCGGTTGTGGTACTGTACGTGAGTAGCGTGTAGTACAATGCGT AGACAGGCCATATCGCCAAGCGCAAGATATAGTCTTGAGAAGTTATTTCA GTTTTTCTTCCGTCAGTGCTGGTCCATTTCATCTCTCCGGCGGAACACTC TCGGTCGGCATGTTTTGTTTTGTGTTTTTGGGATACGCCTGCTGTCTTGT CGCGTTTTCTTCTCTTCTCGTGTCCGCTGCGCCATAACATACCAGGTTAA GTTTGTTTTGGAAGACCAAACAAACAAACTGGAGGTTATGTGATGGGAAG GGAAGACTTCGGAACATCTTCGAGATTTACGTATGTAATTGTTGTGCCGC CCTCGTTTAGTTCTTGTACTGTGTTGTTTATCCCGGCCCCCCGTCTATGC ATGTCATGTCTCAGGGCACGGGTCTCGCATTCCTGCCGGACCACACGGAG CCACTCACCGGGTTTCCATCGTCAGCGTTTCCGGGACAGGTGTGACCAGA CTGTCCACTTTGACCAATCACCGACAACGCACGAACAGACAGACAGACAG TCGGGGCGCTGTCGGCTGCGCCGAGGGCGATACATATATTTCTACACGCT TGTGTTAACCGGATGCCCATCCAACCCTTACAGTCTCCAAGAACAAGACG CTCACCCCCCCCTCCACATCCCTCTCCCCTGTTTGCGAATTTTGTACTTC ATTGTGCCACAGAGAGACAGGTGTGTTTTTAACTCGGCCGGCGATGTTTT GTTTCCTCCATTTGTGTTATATTGTGTCTAATATGTTTTTATTTTCCCTC CTTTTCCCTGCCGAAAACATGTTTATAATATGAACAGATTCTTGCACGCG TGGCTCGGCTGCTGGAGCTCGCCGAGTCGGACCTGAAGCACTTCCGCACG GTCACTCGATCCCCGGAGGGGCGCCCCCGCCCTGTCTACCCGTCTACCGC CTTGCAGGTACTAAGTGGCCCATCCTGCTGATGACACAAACCATGTTCGT GCTTGACGAGCAACAGCGTGGTGTGTGTGTGTTTCGAACCTGTTCATGCA CGTGTGTGTGTTTTTTTTCTTTTTGGTAGCTTGGTGTGTCGGGAGTCAGC TTTCTTTTTCCTTTGACCACCGTAAATTCGTGTCCGTGCTTGTGTGTGTG ACCCTCCGTTTTCCGTCGGCAACATCACATCTCACAACAAAAATAACAAC AGCAAAGGTCAGCTGTTTGCTGTGACGACCAAGAACTCGTGTCCTTGCCC CCGTGACCCCCCGTTTTCGGTTGGCAACCTCACACAACGACGTCGACGAC GACGGTGACGACAGATTGGCCTCCTCAAGAACAAGAACGTGCCAGACCTG GTCCCGTGCCTGCTCCCCGCCGGCTACCCGGCCGCCTGCCACCGCTTCCT TCGGAAGTGGCTCCTGCTGCCTCCTTCCTACCGCCTCGCCGACAGCGCGC ACAGCCTCTGCAGGCAGCTCGCATCGCCCGAGCAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12291:290..3774+

>mRNA_E-fasciculatus_F_contig12291.1766.1 ID=mRNA_E-fasciculatus_F_contig12291.1766.1|Name=mRNA_E-fasciculatus_F_contig12291.1766.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12291:290..3774+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAACGACGTCGACGCGCAGAGAGGACCGAGCGCCAAGAAGGGCATCAA
GGAGAGGGCTCTGTCGCAGATGAACGACGTCGACGCGCAGAGAGGACCGA
GCGCCAAGAAGGGCATCAAGGAGAGGGCTCTGTCGCAGGTTTTGTCGCCC
GGCAGCCCGAACTACCTCTACGAGGGCTGCCTGAGGACGGACGACATCAG
CTTCCGAGAGTCAAAGCCGTACGTGGGGGTGATGAAGGATAGCTCCGGTT
ACCTCCTCTGCCAGGCGAGCTGCTGTCTCATTCATGCCTTGTGTTGTTGT
GGTGCCTGTGTTTTGTCGCCCGGCAGCCCGAACTACCTCTACGAGGGCTG
CCTGAGGACGGACGACATCAGCTTCCGAGAGTCAAAGCCGTACGTGGGGG
TGATGAAGGATAGCTCCGGTTACCTCCTCTGCCAGGCGAGCTGCTGTCTC
ATTCATGCCTTGTGTTGTTGTGGTGCCTGTATCTACCCGGACGAGAGGGA
GGTACAGGTGTCCGAGAGAATGACGGCGGAGGCGGTGAGGGTCGCCATAG
AGGAGGCCGGGGTCGCCGAGCCCGTGTTCGACCAGATCTACCCGGACGAG
AGGGAGGTACAGGTGTCCGAGAGAATGACGGCGGAGGCGGTGAGGGTCGC
CATAGAGGAGGCCGGGGTCGCCGAGCCCGTGTTCGACCAGGGCACGGGTC
TCGCATTCCTGCCGGACCACACGGAGCCACTCACCGGGTTTCCATCGTCA
GCGTTTCCGGGACAGGGCACGGGTCTCGCATTCCTGCCGGACCACACGGA
GCCACTCACCGGGTTTCCATCGTCAGCGTTTCCGGGACAGATTCTTGCAC
GCGTGGCTCGGCTGCTGGAGCTCGCCGAGTCGGACCTGAAGCACTTCCGC
ACGGTCACTCGATCCCCGGAGGGGCGCCCCCGCCCTGTCTACCCGTCTAC
CGCCTTGCAGATTCTTGCACGCGTGGCTCGGCTGCTGGAGCTCGCCGAGT
CGGACCTGAAGCACTTCCGCACGGTCACTCGATCCCCGGAGGGGCGCCCC
CGCCCTGTCTACCCGTCTACCGCCTTGCAGATTGGCCTCCTCAAGAACAA
GAACGTGCCAGACCTGGTCCCGTGCCTGCTCCCCGCCGGCTACCCGGCCG
CCTGCCACCGCTTCCTTCGGAAGTGGCTCCTGCTGCCTCCTTCCTACCGC
CTCGCCGACAGCGCGCACAGCCTCTGCAGGCAGCTCGCATCGCCCGAGCA
GATTGGCCTCCTCAAGAACAAGAACGTGCCAGACCTGGTCCCGTGCCTGC
TCCCCGCCGGCTACCCGGCCGCCTGCCACCGCTTCCTTCGGAAGTGGCTC
CTGCTGCCTCCTTCCTACCGCCTCGCCGACAGCGCGCACAGCCTCTGCAG
GCAGCTCGCATCGCCCGAGCAG
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