mRNA_E-fasciculatus_F_contig12291.1766.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: D7FHW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHW1_ECTSI) HSP 1 Score: 434 bits (1116), Expect = 1.680e-153 Identity = 219/237 (92.41%), Postives = 221/237 (93.25%), Query Frame = 1
Query: 1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLASPEQ 711
MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQ IYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDL HFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAH+LC+QLASPEQ
Sbjct: 1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQ---------------IYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLMHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCKQLASPEQ 222
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A6H5K8J3_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8J3_9PHAE) HSP 1 Score: 221 bits (564), Expect = 4.510e-63 Identity = 117/144 (81.25%), Postives = 118/144 (81.94%), Query Frame = 1
Query: 280 MTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLASPEQ 711
MTAEAVRVAIEEAGVAEPVFDQ ILARVARLLEL ESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAH+LCRQLASPEQ
Sbjct: 1 MTAEAVRVAIEEAGVAEPVFDQ-------------------------ILARVARLLELTESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHNLCRQLASPEQ 119
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A0G4EAV3_VITBC (DNA_MISMATCH_REPAIR_2 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EAV3_VITBC) HSP 1 Score: 192 bits (488), Expect = 1.640e-52 Identity = 103/236 (43.64%), Postives = 150/236 (63.56%), Query Frame = 1
Query: 1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTG--LAFLPDHTEPLTGFPSSA-FPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLA 699
++D DA+RGP +K+ IK R L+Q++SPGS YLY+ CLR DD+ +RES+PYV +M +SGY +C+ I+ +E+ V+V++R+T EA RV +E AG EP++ Q L FLPD+ G P+++ F +L V + L++ ++ F+ VT + E RPRP+Y ST QIGL+K ++PDLV LLP + A +RFLR+W+L PP YRLADS LC L+
Sbjct: 172 LSDADAERGPPSKR-IKRRVLAQIVSPGSSTYLYDLCLRADDVGYRESRPYVALMGTASGYSMCE---------------IFIEEKFVRVADRLTQEAARVKVETAGAVEPIYMQDVSELLPFLPDYRITFKGHPTASHFHTAVLRDVCKNLQINPAE---FQVVTGTDEDRPRPLYTSTVTQIGLIKTSSIPDLVLSLLPDNHAAHSNRFLRRWILSPPPYRLADSMRDLCTALS 388
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A836CI19_9STRA (AP2/ERF domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI19_9STRA) HSP 1 Score: 165 bits (418), Expect = 4.030e-43 Identity = 113/292 (38.70%), Postives = 137/292 (46.92%), Query Frame = 1
Query: 1 MNDVDAQRGPSAKKGIKE--------------RALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCG------------------------ACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLAFLPDHTEPLTGFP-----------------SSAFPGQILARVARLLELAESDLKHFRTVTRSPE----GRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLA 699
+ND DA IKE R L+QV++PGSP Y Y+ CLRTDD+ F E +PYVGV + + G+ + A +Y D R +VSERMT EA+R A+E G AEP+ L + D P G F +L RV +LELA + F TV RS GRPRPVY STALQIGLL N NVPDL+P LLP GYP C RFLR+WLL PP + LAD+ LCR A
Sbjct: 440 LNDADALGDGGRSGRIKEXXXXXXXXXXXGPRRVLAQVVTPGSPTYYYDACLRTDDVEFAECRPYVGVARGAGGFTMVXXXXXXXXXXXXXXXXXXXXVKSRXXXXXXXXXXXXXXAEVYADARSARVSERMTEEALRAALEAGGAAEPL------LIGVGDEKPPQGGTAXXXXXXXXXGRVRYFGGEEGFVKAVLGRVGSILELAGGESGAF-TVARSQRAREAGRPRPVYLSTALQIGLLPNPNVPDLIPRLLPRGYPGHCARFLRRWLLSPPPHALADAMAELCRACA 724
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A4D9CWC2_9STRA (DNA mismatch repair protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CWC2_9STRA) HSP 1 Score: 136 bits (343), Expect = 4.280e-33 Identity = 93/250 (37.20%), Postives = 140/250 (56.00%), Query Frame = 1
Query: 1 MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMK-DSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGT--GL--AFLP-----DHTEPLTGFPSSAFPGQILARVARLLEL-AESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPA-GYPAA---CHRFLRKWLLLPPSYRLADSAHSLCRQLASP 705
++D+D+ ++K +K R LSQ++SPG+ YLY+ CLR DD+ + E++P++G++ S+GY L + ++ D + +++E +T E V++ + G+AEP++ Q GL LP + E S +F ++ + R LE+ A +D H R V RPRP+ +TALQIGL+ N VPDLVP LLPA P RFLR+WLL PP Y LAD+ +LCR LA P
Sbjct: 249 ISDLDSASPRTSK--LKSRLLSQIVSPGASTYLYDCCLRPDDVEYPENRPFLGLLNLPSNGYTLVE---------------VHVDAQTARITEGLTEEGVKMMLLAGGMAEPLYTQAVERGLLRVLLPGGGEVERRELFGHVDSRSFYQALVQALGRDLEIEALADQVHVR-VAPPLHSRPRPIPLATALQIGLVANSAVPDLVPHLLPAHALPLLRVHSSRFLRRWLLTPPPYHLADAMQALCRHLARP 480
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A7S3WA61_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WA61_EMIHU) HSP 1 Score: 117 bits (292), Expect = 1.060e-26 Identity = 83/230 (36.09%), Postives = 110/230 (47.83%), Query Frame = 1
Query: 40 KGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVFDQGTGLA------FLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGR---PRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLAS 702
KGIKER LSQVLS GSP YL++ CL I + +PY + K + GY L +H ++ DER V R++ A+R + A P+ G+ A +LP L +S +A VA ++L D F SP GR PRPVY +TA Q+GLL +PDL LLP PA LR+ LLLPP +AD+ S C L +
Sbjct: 133 KGIKERRLSQVLSAGSPTYLHDRCLSPHPIDYSAPRPYAALAKAADGYTL-------VH--------VFVDERTYHVHRRLSLPALRSLLAARPHAPPLLLGGSADAASSAASWLPAERRRLAVKSASRLAAAAVAHVAAEVQL---DAATFSAAPSSPAGRHAPPRPVYVTTASQVGLLPAAGIPDLPRALLPRTAPAESVELLRRLLLLPPRPAIADALRSACEALGA 344
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A9SXU2_PHYPA (Predicted protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A9SXU2_PHYPA) HSP 1 Score: 91.3 bits (225), Expect = 1.950e-17 Identity = 77/247 (31.17%), Postives = 116/247 (46.96%), Query Frame = 1
Query: 10 VDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTD-DISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAI----------------EEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLA 699
V+ +GP AK +KER ++ PGSP Y+Y G + D D+ F E P +G+ + GY CLI L V + +T EAV + + AG+A+ + +G GL + + + G ++++V L +L D + FR + P RPRP+Y STA QIG+L VP L+ LLP + C ++R LL PP +R+AD + CR+LA
Sbjct: 254 VEEVQGPQAKGHLKERFVAGHAHPGSP-YVY-GLVSADVDLEFPEPVPVMGISRSRRGY-------CLISVL--------EMMHSFSVEDALTEEAVVAKLRSRQCQQLFMHRSLRRDTAGIAQ--WGEG-GLLYGECQKKQQEWYDDDPVDG-LISKVRELFDL--DDDQEFREIVVPPGERPRPLYVSTASQIGILPTAGVPSLLMVLLPPEANSLCTSYVRNLLLHPPPHRVADCIQAACRKLA 477
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A1L7NZY2_PHYPA (MutS homolog 1B n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A1L7NZY2_PHYPA) HSP 1 Score: 91.3 bits (225), Expect = 2.180e-17 Identity = 77/247 (31.17%), Postives = 116/247 (46.96%), Query Frame = 1
Query: 10 VDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTD-DISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAI----------------EEAGVAEPVFDQGTGLAFLPDHTEPLTGFPSSAFPGQILARVARLLELAESDLKHFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLADSAHSLCRQLA 699
V+ +GP AK +KER ++ PGSP Y+Y G + D D+ F E P +G+ + GY CLI L V + +T EAV + + AG+A+ + +G GL + + + G ++++V L +L D + FR + P RPRP+Y STA QIG+L VP L+ LLP + C ++R LL PP +R+AD + CR+LA
Sbjct: 254 VEEVQGPQAKGHLKERFVAGHAHPGSP-YVY-GLVSADVDLEFPEPVPVMGISRSRRGY-------CLISVL--------EMMHSFSVEDALTEEAVVAKLRSRQCQQLFMHRSLRRDTAGIAQ--WGEG-GLLYGECQKKQQEWYDDDPVDG-LISKVRELFDL--DDDQEFREIVVPPGERPRPLYVSTASQIGILPTAGVPSLLMVLLPPEANSLCTSYVRNLLLHPPPHRVADCIQAACRKLA 477
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A7S3HJJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HJJ9_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 2.000e-14 Identity = 55/148 (37.16%), Postives = 77/148 (52.03%), Query Frame = 1
Query: 298 RVAIEEAGVAEPVFDQ--GTG-LAFLP-----DHT-EPLTGFPSSAFPGQILARVARLLELAESDLK-----HFRTVTRSPEGRPR-----------PVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAACHRFLRKWLLLPPSYRLA 666
R + G EP++ Q TG LAFL +HT E ++G+ + FP Q+L R++R +E+ +++ T++ P+Y STALQIGL+ N NVPDL+P LLP A RFLRKWLL PP +A
Sbjct: 1 RSLLASTGHIEPIYTQDCSTGDLAFLTHISPGEHTYEKMSGYSEADFPQQVLRRLSRRMEINVDNIRVCNRNELNTLSSXXXXXXXXXXASVITPLMPIYTSTALQIGLIANNNVPDLIPSLLPTRAGAYSSRFLRKWLLNPPPAHIA 148
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Match: A0A5J4XCK7_9CHLO (Mitochondrial-targeted muts 1 (Fragment) n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XCK7_9CHLO) HSP 1 Score: 73.6 bits (179), Expect = 1.050e-11 Identity = 69/246 (28.05%), Postives = 108/246 (43.90%), Query Frame = 1
Query: 34 AKKGIKERALSQVLSPGSPNYLYEGCL-RTDDISFRESKPYVGVMKDSSGYLLCQASCCLIHALCCCGACIYPDEREVQVSERMTAEAVRVAIEEAGVAEPVF---------DQGTGLAFLPDHTEPLTGFPSSAFPGQI--------LARVARLLELAESDLK-----HFRTVTRSPEGRPRPVYPSTALQIGLLKNKNVPDLVPCLLPAGYPAAC-HRFLRKWLLLPPSYRLADSAHSLCRQLA 699
A+ +K R + V++P P YLY R+D F+ES P +G+ GY + + + L C QV+E +T +AV + + G+ P++ D+ + + E S F Q+ V LL L + +L +F VT + RP+PVY STA Q+G+ K V L+ LLP + R+LR+ LLLPP +A S + C+ L+
Sbjct: 14 ARTKMKNRFIGGVVTPAQPQYLYSMMEDRSDAHDFQESPPILGIAAAVGGYKVMEVD---VDMLTC------------QVTEGLTEDAVSARLHQGGLVPPLYLHSSIHARQDRQISESTVEAEWEQRV---SQLFRSQVGLVKKYSDAEAVPGLLNLVKMELGLSTGVNFTQVTTAATDRPKPVYKSTACQLGIHKTAGVWPLLDSLLPPTPTSLLVRRWLRRLLLLPPPTEVAKSIRTACQFLS 241 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12291.1766.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12291.1766.1 >prot_E-fasciculatus_F_contig12291.1766.1 ID=prot_E-fasciculatus_F_contig12291.1766.1|Name=mRNA_E-fasciculatus_F_contig12291.1766.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=237bp MNDVDAQRGPSAKKGIKERALSQVLSPGSPNYLYEGCLRTDDISFRESKPback to top mRNA from alignment at E-fasciculatus_F_contig12291:290..3774+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12291.1766.1 ID=mRNA_E-fasciculatus_F_contig12291.1766.1|Name=mRNA_E-fasciculatus_F_contig12291.1766.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3485bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12291:290..3774+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12291:290..3774+ >mRNA_E-fasciculatus_F_contig12291.1766.1 ID=mRNA_E-fasciculatus_F_contig12291.1766.1|Name=mRNA_E-fasciculatus_F_contig12291.1766.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1422bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12291:290..3774+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |