mRNA_E-fasciculatus_F_contig12282.1763.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12282.1763.1
Unique NamemRNA_E-fasciculatus_F_contig12282.1763.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12282.1763.1 vs. uniprot
Match: D8LDT8_ECTSI (Laminin IV type A domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDT8_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.770e-50
Identity = 87/89 (97.75%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:   19 APLALHQVVSVSPGGEAVIRLSGYDLDGDDLVATISSLPESGTLHQLSKVYSEYGYDPAAGEVIAGGGGIEVTGSGNRVVYKRPAADAE 285
            APLALHQVVSVSPGGEAVIRLSGYDLDGDDLVATISSLPESGTLHQLSKVYSEYGYDPAAGEVIAG GG+EVTGSGNRVVYKRPAADAE
Sbjct:   60 APLALHQVVSVSPGGEAVIRLSGYDLDGDDLVATISSLPESGTLHQLSKVYSEYGYDPAAGEVIAGSGGVEVTGSGNRVVYKRPAADAE 148
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BLAST of mRNA_E-fasciculatus_F_contig12282.1763.1 vs. uniprot
Match: A0A7R9W2Q5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2Q5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.420e-25
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   19 APLALHQVVSVSPGGEAVIRLSGYDLDGDDLVATISSLPESGTLHQLSKVYSEYGYDPAAGEVIAGGGGIEVTGSGNRVVYKRPAADAE 285
            APLALH +  V  GGE VI L GYDLDGD  VATI+SLP SGTLHQL+ ++ ++GYDP AG  I      +VTG+G+R+VYKRPA D E
Sbjct:   53 APLALHHLHEVEAGGELVIPLHGYDLDGDKTVATITSLPTSGTLHQLTSIFDKHGYDPKAGTQITTVPS-QVTGTGSRLVYKRPAIDRE 140
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BLAST of mRNA_E-fasciculatus_F_contig12282.1763.1 vs. uniprot
Match: A0A7R9W2D7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2D7_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.710e-24
Identity = 54/89 (60.67%), Postives = 65/89 (73.03%), Query Frame = 1 
Query:   19 APLALHQVVSVSPGGEAVIRLSGYDLDGDDLVATISSLPESGTLHQLSKVYSEYGYDPAAGEVIAGGGGIEVTGSGNRVVYKRPAADAE 285
            APLALH +  V  GGE VI L GYDLDGD  VATI+SLP SGTLHQL+ ++ ++GYDP AG  I      +VTG+G+R+VYKRPA D E
Sbjct:   53 APLALHHLHEVEAGGELVIPLHGYDLDGDKTVATITSLPTSGTLHQLTSIFDKHGYDPKAGTQITTVPS-QVTGTGSRLVYKRPAIDRE 140
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BLAST of mRNA_E-fasciculatus_F_contig12282.1763.1 vs. uniprot
Match: A0A7S3ZSM5_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSM5_9STRA)

HSP 1 Score: 97.8 bits (242), Expect = 2.930e-22
Identity = 55/93 (59.14%), Postives = 62/93 (66.67%), Query Frame = 1 
Query:    7 VAAPAPLALHQVVSVSPGGEAVIRLSGYDLDGDDLVATISSLPESGTLHQLSKVYSEYGYDPAAGEVIAGGGGIEVTGSGNRVVYKRPAADAE 285
            V+A  P+A H  V V+PG EAV+ L GYD DGD L ATI+SLP SG LHQLSKVYS +GYDP  G+  A      VTGS NRV Y RP  D E
Sbjct:   14 VSAAPPIAKHVTVVVNPGEEAVVDLRGYDTDGDPLSATITSLPSSGALHQLSKVYSTHGYDPKKGK--AASVNAPVTGSRNRVHYVRPEYDVE 104
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BLAST of mRNA_E-fasciculatus_F_contig12282.1763.1 vs. uniprot
Match: A0A7S2CSJ5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CSJ5_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 5.040e-20
Identity = 48/88 (54.55%), Postives = 64/88 (72.73%), Query Frame = 1 
Query:   22 PLALHQVVSVSPGGEAVIRLSGYDLDGDDLVATISSLPESGTL-HQLSKVYSEYGYDPAAGEVIAGGGGIEVTGSGNRVVYKRPAADA 282
            P+A HQ+V V   GE VI + GYDLDGD LVA++ +LP S +L +QLSKV+S+YGY+P  G  I+    + VTGS NRV+YKRP+ D+
Sbjct:   37 PIAPHQLVMVDSSGEFVIAMRGYDLDGDSLVASLKTLPGSPSLLYQLSKVFSDYGYEPKMGTSISAS--VNVTGSQNRVLYKRPSIDS 122
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BLAST of mRNA_E-fasciculatus_F_contig12282.1763.1 vs. uniprot
Match: A0A7S1Z683_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1Z683_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 5.650e-14
Identity = 40/72 (55.56%), Postives = 50/72 (69.44%), Query Frame = 1 
Query:   70 VIRLSGYDLDGDDLVATISSLPESGTLHQLSKVYSEYGYDPAAGEVIAGGGGIEVTGSGNRVVYKRPAADAE 285
            V+ L GYDL+GD  +ATI+ LP SG L+QLS VY+++GYDP AG  I       VTG  +R+VYKRPA D E
Sbjct:    2 VLALHGYDLNGDKTLATITKLPTSGKLYQLSYVYNKHGYDPKAGVQITSIP-CNVTGDKSRLVYKRPAIDQE 72
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BLAST of mRNA_E-fasciculatus_F_contig12282.1763.1 vs. uniprot
Match: A0A2D4BEA1_PYTIN (Laminin IV type A domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BEA1_PYTIN)

HSP 1 Score: 75.5 bits (184), Expect = 6.970e-14
Identity = 39/83 (46.99%), Postives = 51/83 (61.45%), Query Frame = 1 
Query:   22 PLALHQVVSVSPGGEAVIRLSGYDLDGDDLVATISSLPESGTLHQLSKVYSEYGYDPAAGEVIAGGGGIEVTGSGNRVVYKRP 270
            P+A H V  V PG EAVI   G++ DG  L  T+ SLP +G L+QLS+V+S+YGY+P   E         +TGS NR V+ RP
Sbjct:  212 PIARHLVYHVDPGQEAVIVFKGFNQDGAKLSVTLVSLPTNGALYQLSRVFSDYGYEPKREETPISTVPSVITGSKNRAVFSRP 294
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BLAST of mRNA_E-fasciculatus_F_contig12282.1763.1 vs. uniprot
Match: A0A482S0G7_9ARCH (Uncharacterized protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S0G7_9ARCH)

HSP 1 Score: 55.5 bits (132), Expect = 1.300e-7
Identity = 31/57 (54.39%), Postives = 37/57 (64.91%), Query Frame = 1 
Query:  109 LVATISSLPESGTLHQLSKVYSEYGYDPAAGEVIAGGGGIEVTGSGNRVVYKRPAAD 279
            L  TI++ P SGTL QLS+VYS+YGY+P  G  I     + VTGS NRV Y RP  D
Sbjct:   20 LTYTITAPPSSGTLSQLSQVYSKYGYEPKHGAKILAAP-VNVTGSQNRVHYARPHPD 75
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12282.1763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LDT8_ECTSI1.770e-5097.75Laminin IV type A domain-containing protein n=2 Ta... [more]
A0A7R9W2Q5_9STRA1.420e-2560.67Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7R9W2D7_9STRA1.710e-2460.67Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S3ZSM5_9STRA2.930e-2259.14Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2CSJ5_9STRA5.040e-2054.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1Z683_9STRA5.650e-1455.56Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A2D4BEA1_PYTIN6.970e-1446.99Laminin IV type A domain-containing protein n=1 Ta... [more]
A0A482S0G7_9ARCH1.300e-754.39Uncharacterized protein (Fragment) n=1 Tax=archaeo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12282contigE-fasciculatus_F_contig12282:3..925 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score173.3
Seed ortholog evalue5.3e-41
Seed eggNOG ortholog2880.D8LDT8
EggNOG free text desc.Laminin B (Domain IV)
EggNOG OGs28YIJ@1,2R5CE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-08_003300.1
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927735.128329-CDS-E-fasciculatus_F_contig12282:2..1311622927735.128329-CDS-E-fasciculatus_F_contig12282:2..131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12282 3..131 -
1695995671.971878-CDS-E-fasciculatus_F_contig12282:2..1311695995671.971878-CDS-E-fasciculatus_F_contig12282:2..131Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12282 3..131 -
1622927735.1400986-CDS-E-fasciculatus_F_contig12282:769..9251622927735.1400986-CDS-E-fasciculatus_F_contig12282:769..925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12282 770..925 -
1695995671.983945-CDS-E-fasciculatus_F_contig12282:769..9251695995671.983945-CDS-E-fasciculatus_F_contig12282:769..925Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12282 770..925 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12282.1763.1prot_E-fasciculatus_F_contig12282.1763.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12282 3..925 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12282.1763.1

>prot_E-fasciculatus_F_contig12282.1763.1 ID=prot_E-fasciculatus_F_contig12282.1763.1|Name=mRNA_E-fasciculatus_F_contig12282.1763.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=95bp
ADVAAPAPLALHQVVSVSPGGEAVIRLSGYDLDGDDLVATISSLPESGTL
HQLSKVYSEYGYDPAAGEVIAGGGGIEVTGSGNRVVYKRPAADAE
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mRNA from alignment at E-fasciculatus_F_contig12282:3..925-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12282.1763.1 ID=mRNA_E-fasciculatus_F_contig12282.1763.1|Name=mRNA_E-fasciculatus_F_contig12282.1763.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=923bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12282:3..925- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGATGTTGCTGCACCAGCCCCGCTAGCTTTACACCAAGTCGTTTCTGT
TTCTCCCGGGGGAGAAGCAGTGATTCGCTTATCTGGCTACGACTTAGACG
GGGACGATCTCGTTGCCACCATATCATCGTTGCCGGAATCGGGTACCCTT
CACCAGGTAGGCCATCGACGGCACCGCCTATTAAGCGGCTCTGTAAAGTC
TAGGCTACCAGTTTTGATGCGTCGAATAGCTCGAGATTATCTCTCGCTGA
CATGCTGGTACGAGCCTGGCCGGCGAAAACCCGGCGTGCTCCGTCCCGGC
GTTGTAGGGATGCGAGGTCTATGGTCTAACGACTACGGCATGCATGATAC
TGAGTACCGAGTACACCCCCTGACATGCTGGTAGAACTCTCTTCGATTTG
TCAGTGGAGCTGCTCCCTCCCGTTTTTCTATGTCGCCATTCTCCATGTAA
ACTTTGCACATCACTGTCGGATGGCCAACAAAAGACACCCCTTATATTCG
TTTCCTGCCATCAAAGCACCAGATATTGTGCACGTAAGGCGGGTGCACTG
GCCTAGACAGCCGCTGTCACATTGTAGCAGCTGACGTATTTCGTCTACTT
CGTATGTACCTAAGCAATGGGCAGCTCTTGGTGCCCGCGTGCCACCTCCA
CGCAGCCATCGTACGTACTGGCCTCTACAATCATGTGCCAAACATTCTGG
GAACTTTTGTTGGATTTGTTGTTTGCAAAGCGCAACCATTTCGTGCTGAC
CATGCACATCGACATTGCTCGGGTCGACCACGCCATCCTCGTAGCTTTCC
AAGGTGTACTCTGAGTACGGGTACGACCCAGCAGCAGGCGAGGTTATCGC
TGGCGGTGGTGGCATTGAAGTGACCGGTTCGGGAAATCGTGTGGTGTACA
AGAGACCGGCGGCGGATGCTGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12282:3..925-

>mRNA_E-fasciculatus_F_contig12282.1763.1 ID=mRNA_E-fasciculatus_F_contig12282.1763.1|Name=mRNA_E-fasciculatus_F_contig12282.1763.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=570bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12282:3..925- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGATGTTGCTGCACCAGCCCCGCTAGCTTTACACCAAGTCGTTTCTGT
TTCTCCCGGGGGAGAAGCAGTGATTCGCTTATCTGGCTACGACTTAGACG
GGGACGATCTCGTTGCCACCATATCATCGTTGCCGGAATCGGGTACCCTT
CACCAGGCCGATGTTGCTGCACCAGCCCCGCTAGCTTTACACCAAGTCGT
TTCTGTTTCTCCCGGGGGAGAAGCAGTGATTCGCTTATCTGGCTACGACT
TAGACGGGGACGATCTCGTTGCCACCATATCATCGTTGCCGGAATCGGGT
ACCCTTCACCAGCTTTCCAAGGTGTACTCTGAGTACGGGTACGACCCAGC
AGCAGGCGAGGTTATCGCTGGCGGTGGTGGCATTGAAGTGACCGGTTCGG
GAAATCGTGTGGTGTACAAGAGACCGGCGGCGGATGCTGAGCTTTCCAAG
GTGTACTCTGAGTACGGGTACGACCCAGCAGCAGGCGAGGTTATCGCTGG
CGGTGGTGGCATTGAAGTGACCGGTTCGGGAAATCGTGTGGTGTACAAGA
GACCGGCGGCGGATGCTGAG
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