mRNA_E-fasciculatus_F_contig1228.1761.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1228.1761.1
Unique NamemRNA_E-fasciculatus_F_contig1228.1761.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1228.1761.1 vs. uniprot
Match: D7FYV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV9_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 9.780e-108
Identity = 166/203 (81.77%), Postives = 174/203 (85.71%), Query Frame = 1 
Query:  403 VGRFYD----SFCLPV--RSQHVKHAQWLRDPERSKGIPTGEHLLDMFKLEHFERAGGGGGEAYFGVGTSSGPQVEDQPGEDEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIARRCRPAPLPMDTVPVPGNPRVQYMEVHYMSPIKRRAGLAAVSAASGTGKNITRVGLSEVGGTEGGVLSAEAVLLWSQAGEGGG 993
            +GR +D     F  P   +    +HAQWLRDPERSKGIPTGEHLLDMFKLE FER GGGG EAYFGV TSS PQVE+Q G+DEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIARRC PAP PMD VP+PGNPRVQYMEVHYMSPIKRRAGLAAVSAAS  GKN+TRVGLSE GGTEGGVLSAEAVLLWSQ GEG G
Sbjct:   50 MGRAWDLSTNPFVFPYARKMSERQHAQWLRDPERSKGIPTGEHLLDMFKLEQFERVGGGGDEAYFGVATSSDPQVEEQAGDDEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIARRCPPAPFPMDAVPIPGNPRVQYMEVHYMSPIKRRAGLAAVSAASEIGKNVTRVGLSEAGGTEGGVLSAEAVLLWSQRGEGRG 252
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BLAST of mRNA_E-fasciculatus_F_contig1228.1761.1 vs. uniprot
Match: A0A6H5KQ82_9PHAE (4HBT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ82_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.280e-105
Identity = 164/203 (80.79%), Postives = 173/203 (85.22%), Query Frame = 1 
Query:  403 VGRFYDSFCLPVRSQHVK------HAQWLRDPERSKGIPTGEHLLDMFKLEHFERAGGGGGEAYFGVGTSSGPQVEDQPGEDEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEIARRCRPAPLPMDTVPVPGNPRVQYMEVHYMSPIKRRAGLAAVSAASGTGKNITRVGLSEVGGTEGGVLSAEAVLLWSQAGEGGG 993
            +GR +D   +P    + +      HAQWLRDPERSKGIPTGEHLLDMFKLE FER GGGG E YFG  TSSGPQVE+Q GE EGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEI+RRC PAP PMD VP+PGNPRVQYMEVHYMSPIKRRAGLAAVSAASG GKN+TRVGLSE GGTEGGVLSAEAVLLWSQ GEG G
Sbjct:  164 MGRAWDLSTIPFVFPYARKLSERQHAQWLRDPERSKGIPTGEHLLDMFKLEQFERVGGGGDEEYFGGATSSGPQVEEQAGEVEGGFRSAEAECLVTRRMCNYMPGTMHGGAIAVAAEEISRRCPPAPFPMDAVPIPGNPRVQYMEVHYMSPIKRRAGLAAVSAASGIGKNVTRVGLSEAGGTEGGVLSAEAVLLWSQRGEGRG 366
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BLAST of mRNA_E-fasciculatus_F_contig1228.1761.1 vs. uniprot
Match: A0A6H5KAZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAZ1_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.220e-12
Identity = 34/39 (87.18%), Postives = 34/39 (87.18%), Query Frame = -2 
Query:   51 QDTHYTETGNMDKGGGTHTRTAVSDAGGSGERFVGLGFI 167
            QDTHYTETGNMDKG GTHT TAV D GGSGER VGLGFI
Sbjct:   47 QDTHYTETGNMDKGDGTHTHTAVGDGGGSGERLVGLGFI 85
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BLAST of mRNA_E-fasciculatus_F_contig1228.1761.1 vs. uniprot
Match: A0A6H5KQS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQS6_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.980e-6
Identity = 22/22 (100.00%), Postives = 22/22 (100.00%), Query Frame = -1 
Query:  100 RHALHRDREHGQGGRDTHTYCC 165
            RHALHRDREHGQGGRDTHTYCC
Sbjct:   42 RHALHRDREHGQGGRDTHTYCC 63
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1228.1761.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FYV9_ECTSI9.780e-10881.77Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQ82_9PHAE1.280e-10580.794HBT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5KAZ1_9PHAE2.220e-1287.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQS6_9PHAE3.980e-6100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1228contigE-fasciculatus_F_contig1228:16636..19036 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.5
Seed ortholog evalue2.1e-72
Seed eggNOG ortholog2880.D7FYV9
EggNOG OGs2EY9U@1,2SZTY@2759
Ec32 ortholog descriptionHotDog domain
Ec32 orthologEc-19_002660.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1335
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1228.1761.1prot_E-fasciculatus_F_contig1228.1761.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1228 16942..17448 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927734.9891815-UTR-E-fasciculatus_F_contig1228:16635..169411622927734.9891815-UTR-E-fasciculatus_F_contig1228:16635..16941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1228 16636..16941 -
1695995671.9102533-UTR-E-fasciculatus_F_contig1228:16635..169411695995671.9102533-UTR-E-fasciculatus_F_contig1228:16635..16941Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1228 16636..16941 -
1622927735.0239434-UTR-E-fasciculatus_F_contig1228:17448..174781622927735.0239434-UTR-E-fasciculatus_F_contig1228:17448..17478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1228 17449..17478 -
1695995671.9334683-UTR-E-fasciculatus_F_contig1228:17448..174781695995671.9334683-UTR-E-fasciculatus_F_contig1228:17448..17478Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1228 17449..17478 -
1622927735.038459-UTR-E-fasciculatus_F_contig1228:18034..182081622927735.038459-UTR-E-fasciculatus_F_contig1228:18034..18208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1228 18035..18208 -
1695995671.9412014-UTR-E-fasciculatus_F_contig1228:18034..182081695995671.9412014-UTR-E-fasciculatus_F_contig1228:18034..18208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1228 18035..18208 -
1622927735.0522788-UTR-E-fasciculatus_F_contig1228:18718..190361622927735.0522788-UTR-E-fasciculatus_F_contig1228:18718..19036Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1228 18719..19036 -
1695995671.9518638-UTR-E-fasciculatus_F_contig1228:18718..190361695995671.9518638-UTR-E-fasciculatus_F_contig1228:18718..19036Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1228 18719..19036 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927735.0115533-CDS-E-fasciculatus_F_contig1228:16941..174481622927735.0115533-CDS-E-fasciculatus_F_contig1228:16941..17448Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 16942..17448 -
1695995671.9238129-CDS-E-fasciculatus_F_contig1228:16941..174481695995671.9238129-CDS-E-fasciculatus_F_contig1228:16941..17448Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 16942..17448 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1228.1761.1

>prot_E-fasciculatus_F_contig1228.1761.1 ID=prot_E-fasciculatus_F_contig1228.1761.1|Name=mRNA_E-fasciculatus_F_contig1228.1761.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=169bp
MFKLEHFERAGGGGGEAYFGVGTSSGPQVEDQPGEDEGGFRSAEAECLVT
RRMCNYMPGTMHGGAIAVAAEEIARRCRPAPLPMDTVPVPGNPRVQYMEV
HYMSPIKRRAGLAAVSAASGTGKNITRVGLSEVGGTEGGVLSAEAVLLWS
QAGEGGGSLTEREEDQEA*
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mRNA from alignment at E-fasciculatus_F_contig1228:16636..19036-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1228.1761.1 ID=mRNA_E-fasciculatus_F_contig1228.1761.1|Name=mRNA_E-fasciculatus_F_contig1228.1761.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2401bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1228:16636..19036- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGTGTGATGGATGAACAACATCAATCAACGGAAACAACAACAACAGCAGC
GATGAACCCCAGACCAACGAAACGTTCCCCGCTTCCTCCGGCGTCGCTAA
CAGCAGTACGTGTGTGTGTCCCGCCCCCCTTGTCCATGTTCCCTGTCTCT
GTGTAGTGCGTGTCTTGTGTCTTGCCTTCAGCAGCAGCAGCAGCAGCAGC
TGCTGCTGCTGAGAACCGAAAATATCACGCCGGCCGGTTTCATCTGTGGT
CCCGACGTCGCGCTTCCCTACAGGGTTACTTTCAAGTCGCGAGGGCTTAA
GATGGGTGCGCTCCTTGGGTGAGTCCTCACCGCGTGTACCCTAACGACGC
AGCTCGCCGGCTATTTAGTACAGTGGGGCTGGGAAGGATATCCAGGGTTC
AAGCAAGACCAGGAATTGTGCTTGTCGGGTCTACTGTAGTCATGCGCACT
TTGTATGGTCGCGCTTTTCATTGCCGTGGACAACAGTGACGTCCTGCCCT
AGCCCAGCTCGGTAAGCCGTCCGTGTTTACAACGCATTACGCCTCACTTT
CACGTACCATTTCTACACCGACCGGTGGCCTCAAGTTCGCATTAAAAGCA
TGCGGCGGGAGCGCAGTGTATTTTTGCCCCGGCGAATGCGTGTTGGTAAA
GGGTAATGGCATGTCGCCTTCTACAAAAGGTTTCTCGCTCGCTCCTTCCG
CCCCCGTAGGCCTCTGCCGCATGGCTCACGGAATCGATGCAGAAATTGAC
GCAGGATGCCAGCAAACGCTGCCCCCTTCTGGTCAATTCAGACAACTCCA
CGACTTATTGACTACGTGTTTGGCGCAGATACGGGGAGGCTAGCATGTAC
CGTGAAGACGAAAAGCTGGCTGCGAGGGATCGACACGTGAAGCACCTCCC
GATTGGGCGCGCGTGGGACGTTTCTACGATTCCTTTTGTCTTCCCGTACG
CTCGCAACATGTCAAGCACGCACAGTGGCTAAGAGATCCGGAACGATCAA
AGGTGAAAGTCGAGGCCGAGCGCAACGTTGTTGCTCGACGTGACTCTGAG
CGGAGACCTGTACTCTGCGGCTCACCAGACGACAAGAGCATCTTCTGGGC
AGGGTCCTGTACTCACCGTTGGCACCGAGAAGTGCCTATTGTTGTATATA
GTGGGTTTTGGCAACATACTGTAGTTTGGTGTTTTTCTTGTCGAGGTTCT
CGTTCGCGGTCGGAATAAAGTTCTTGCTGCTTTGTCGTTTTTGCTCTGCT
GCCCCTCTTGATTTTGAGCTAATGTGTGGGCTATGCACTCGAGAGCCCTT
TGTACCGGCCAGACCATTACGCAAAGGCACACTGGGTCTCGTGATTGTCA
CTCTCAGGGATACATCCAAATCGAGAAGAGTATTGCCACGTCTCACTTCT
GCCTGCCGCTGTTCCACAGCAACATACTGGGAGTAGATTGTGCAGCGCCC
GGGGTCATTTTGTTTGTCCGCTGCCGAGCGATATATCACCACAGCGCCTA
CCCCTGCCTCACTTCCCCTCTCCCGTCTACGCGGGCTTGTGTGCAACTAA
TACGGAAGGGAATTCCTACGGGAGAGCATCTACTGGACATGTTCAAGCTG
GAACATTTCGAACGTGCTGGAGGAGGGGGAGGCGAGGCGTACTTCGGCGT
GGGAACATCCAGCGGCCCCCAAGTTGAAGACCAACCGGGAGAAGACGAGG
GAGGTTTTCGTAGCGCCGAGGCGGAGTGCCTCGTGACGAGACGCATGTGC
AACTACATGCCAGGGACGATGCACGGCGGCGCAATAGCCGTTGCGGCGGA
AGAGATCGCCCGACGATGTCGCCCGGCGCCCCTCCCGATGGACACCGTTC
CGGTTCCTGGAAACCCTCGCGTTCAATACATGGAGGTGCACTACATGTCG
CCGATCAAGCGACGAGCTGGGCTTGCCGCCGTGTCGGCTGCTTCGGGGAC
AGGCAAAAACATCACAAGAGTAGGACTGTCGGAGGTGGGCGGGACGGAGG
GTGGCGTTCTAAGCGCGGAAGCGGTGCTGCTGTGGAGTCAAGCGGGCGAG
GGGGGGGGTTCATTGACTGAACGCGAGGAGGATCAAGAAGCGTAGGGGGG
ATAGTCTGGCATACCTATCGAGTAGGGGATGCATTTGAATAGTAGCGCTG
CGGGTGAATGGAACATGTTACATCTGGGTTATAAGGAAGAATGACGACCC
GAAACTTCGGCTTGCGAAACATTGATCGAACACGACACGGCGTCAGGAAA
GCGTATTATTTTCTTCGGTCGCTGCGTTCGTTTGTGTTCGTAGCTCGGAG
GGCACACTCACACTATTTTCTGGGGTGAGCTAGGAATCACAAAACCTGCG
TTTGCAGGGCGTTAACTGTAAAAACGAGCACAACGCGCGCAAACACGCAT
G
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1228:16636..19036-

>mRNA_E-fasciculatus_F_contig1228.1761.1 ID=mRNA_E-fasciculatus_F_contig1228.1761.1|Name=mRNA_E-fasciculatus_F_contig1228.1761.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1014bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1228:16636..19036- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCAAGCTGGAACATTTCGAACGTGCTGGAGGAGGGGGAGGCGAGGC
GTACTTCGGCGTGGGAACATCCAGCGGCCCCCAAGTTGAAGACCAACCGG
GAGAAGACGAGGGAGGTTTTCGTAGCGCCGAGGCGGAGTGCCTCGTGACG
AGACGCATGTGCAACTACATGCCAGGGACGATGCACGGCGGCGCAATAGC
CGTTGCGGCGGAAGAGATCGCCCGACGATGTCGCCCGGCGCCCCTCCCGA
TGGACACCGTTCCGGTTCCTGGAAACCCTCGCGTTCAATACATGGAGGTG
CACTACATGTCGCCGATCAAGCGACGAGCTGGGCTTGCCGCCGTGTCGGC
TGCTTCGGGGACAGGCAAAAACATCACAAGAGTAGGACTGTCGGAGGTGG
GCGGGACGGAGGGTGGCGTTCTAAGCGCGGAAGCGGTGCTGCTGTGGAGT
CAAGCGGGCGAGGGGGGGGGTTCATTGACTGAACGCGAGGAGGATCAAGA
AGCGTAGATGTTCAAGCTGGAACATTTCGAACGTGCTGGAGGAGGGGGAG
GCGAGGCGTACTTCGGCGTGGGAACATCCAGCGGCCCCCAAGTTGAAGAC
CAACCGGGAGAAGACGAGGGAGGTTTTCGTAGCGCCGAGGCGGAGTGCCT
CGTGACGAGACGCATGTGCAACTACATGCCAGGGACGATGCACGGCGGCG
CAATAGCCGTTGCGGCGGAAGAGATCGCCCGACGATGTCGCCCGGCGCCC
CTCCCGATGGACACCGTTCCGGTTCCTGGAAACCCTCGCGTTCAATACAT
GGAGGTGCACTACATGTCGCCGATCAAGCGACGAGCTGGGCTTGCCGCCG
TGTCGGCTGCTTCGGGGACAGGCAAAAACATCACAAGAGTAGGACTGTCG
GAGGTGGGCGGGACGGAGGGTGGCGTTCTAAGCGCGGAAGCGGTGCTGCT
GTGGAGTCAAGCGGGCGAGGGGGGGGGTTCATTGACTGAACGCGAGGAGG
ATCAAGAAGCGTAG
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