mRNA_E-fasciculatus_F_contig1228.1759.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1228.1759.1
Unique NamemRNA_E-fasciculatus_F_contig1228.1759.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1228.1759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1228contigE-fasciculatus_F_contig1228:3592..7270 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size780
Cds size777
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1228.1759.1prot_E-fasciculatus_F_contig1228.1759.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1228 3592..7268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927734.7913685-CDS-E-fasciculatus_F_contig1228:3591..37021622927734.7913685-CDS-E-fasciculatus_F_contig1228:3591..3702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 3592..3702 +
1695995671.8041193-CDS-E-fasciculatus_F_contig1228:3591..37021695995671.8041193-CDS-E-fasciculatus_F_contig1228:3591..3702Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 3592..3702 +
1622927734.805903-CDS-E-fasciculatus_F_contig1228:4689..48061622927734.805903-CDS-E-fasciculatus_F_contig1228:4689..4806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 4690..4806 +
1695995671.8126733-CDS-E-fasciculatus_F_contig1228:4689..48061695995671.8126733-CDS-E-fasciculatus_F_contig1228:4689..4806Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 4690..4806 +
1622927734.8162014-CDS-E-fasciculatus_F_contig1228:5155..53181622927734.8162014-CDS-E-fasciculatus_F_contig1228:5155..5318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 5156..5318 +
1695995671.8208349-CDS-E-fasciculatus_F_contig1228:5155..53181695995671.8208349-CDS-E-fasciculatus_F_contig1228:5155..5318Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 5156..5318 +
1622927734.8279114-CDS-E-fasciculatus_F_contig1228:6244..64111622927734.8279114-CDS-E-fasciculatus_F_contig1228:6244..6411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 6245..6411 +
1695995671.8289046-CDS-E-fasciculatus_F_contig1228:6244..64111695995671.8289046-CDS-E-fasciculatus_F_contig1228:6244..6411Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 6245..6411 +
1622927734.8419814-CDS-E-fasciculatus_F_contig1228:6738..68371622927734.8419814-CDS-E-fasciculatus_F_contig1228:6738..6837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 6739..6837 +
1695995671.8367453-CDS-E-fasciculatus_F_contig1228:6738..68371695995671.8367453-CDS-E-fasciculatus_F_contig1228:6738..6837Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 6739..6837 +
1622927734.8567238-CDS-E-fasciculatus_F_contig1228:7148..72681622927734.8567238-CDS-E-fasciculatus_F_contig1228:7148..7268Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 7149..7268 +
1695995671.8448997-CDS-E-fasciculatus_F_contig1228:7148..72681695995671.8448997-CDS-E-fasciculatus_F_contig1228:7148..7268Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1228 7149..7268 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1228.1759.1

>prot_E-fasciculatus_F_contig1228.1759.1 ID=prot_E-fasciculatus_F_contig1228.1759.1|Name=mRNA_E-fasciculatus_F_contig1228.1759.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=259bp
FAKGLAESLVPAREEAIGVGKDSIETKALVEAARRLEDGLKKGGRSDNLP
LVKGLTEAVERYLKTVSSSPKISALQDVVTTGLAFIVNEERWREHLEDGA
CVACSTKDIKHVLPTLQCTAAVCTKSIEEGDEYCVTIGDDRAKERCVGHR
LAGVPRNKHDMVVRVQHQRRRQPMTTCTECKLAEHHVCSMKQPRVNNGLQ
GAMICSWCRKKTSPKRPEKGHCPSPLYGAQKMGVSLSGDGGDDGGGGGAA
AAAVSRDTR
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mRNA from alignment at E-fasciculatus_F_contig1228:3592..7270+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1228.1759.1 ID=mRNA_E-fasciculatus_F_contig1228.1759.1|Name=mRNA_E-fasciculatus_F_contig1228.1759.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3679bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1228:3592..7270+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGCGAAAGGTCTTGCTGAGAGCTTGGTCCCAGCCAGAGAAGAGGCCAT
TGGGGTCGGGAAGGACAGCATCGAGACCAAGGCGCTCGTCGAAGCTGCAA
GACGCTTGGAGGTGAGTCCCAGTACACCAAGAACCTATCAGGTCCACGAT
GATATATTGGTCACTTAGGTTGTATTGATGGAGACGGACGGAGGCACCAT
ATAATATCTGAGGAGATAGAAATATTTATATTCCTGGGAACTCGAAGAGT
TATGTAGCACACCATGCACACAGCGCAGCCAACGGCCCGACGGAGTAACG
GGCGGGGCGATGTTGGCATCTGGTTCGGCTGGCTGCTCTTTTCCCTCCGG
AAAAAGTAATGCTCATCATACCGGTGAATCGGCTTGCACGTTGAAACGTG
TTTCGCTCTGTTGTAAAAGTCACTGATGTCCCCGTCGGCATGTGTTTGGT
ACGGTGAGCTTGTCACCTCACCCTTGTGCTCCAATTTGGAATGCTGCAAT
GAACCATTGCCAGGCACCAGGACGATTAAGATGGGCGCTCGAACGTAAAA
GTTCATCTCCAACACAGAGGAACTTACCAATCAATATAGCTCGCAACGTT
GTTGAAAAATGGTGCACCCACAAAACCAAGAACGAAGGCCACGCCGCCTA
GTTCTGCCGGACGTATCCCAATTGTCTTGCCCCGCTTACGGTTCGGGTGT
GTATTAGCGGAAAATTAGCATTCCTTCATTCGTTTCTCAACTGTAAAGAC
AGTTTTTGGCAATGCTCCATTTGCCAAGACACCCTCTGAAGCGCTTGATC
GGCGGGTTACACAAGCGAATATCGTATTGCATGCAAACAATGGTTTGGTG
TCGCCAATGGCAACATCTGCGCAACGTTTCCCCTGCATCACCCTTGACAG
AGAACCATCGCAAGTGATGAGAAACGCCGGCAACTGACAATGTAAAACCG
CAGAAGAAGACGTCATAGTTTGAGAACCAATCTAGGCGAACCAGCCAGTG
TTCCACGCGATGAGGTTGTCTTCGTCCCTTTCTGCTTGACAAATACGGTC
AATTGTGTGTTCACCAGTCTACAATGCCTACGTTTTGCCCGCTATCAGGA
TGGCCTGAAGAAAGGCGGCCGGTCAGACAACCTCCCGCTCGTCAAGGGCC
TAACCGAAGCAGTTGAAAGGTATTTGAAGACGGTCTCCTCTTCGCCGAAG
ATCTCTGCCCTCCAGGTAAGAGGCCAAACCTCGATCGTGGCAGATCCTGC
AGTCCCGCTGGTTGAAAGCGATCATAGACCTCTGCCCCGAGTGGAAGGCA
TAGACTATCTACTCCAGGCGCCTTCGGCACAACTTGCTCCACAGCTGCAA
AGTGCTCTTCGCGAGAACCACAAACGTGGATTCGGGTTCATGAGGGCGGA
ACTGCCACTCGGCGGGTTTCAGAAGTGAACAACCGTCCGGGTATTCTACA
AGCCCTCACCAAATGCTGGTGCATACCATGTCAGGCCTGATCGTCGCGTG
CACACCACGGAAATCTCACATTTTTTTCAACCGTTTACACGGCTGGGTGG
TGGCCTCTGTTCAGGACGTGGTCACCACTGGGTTGGCATTTATCGTAAAC
GAGGAACGGTGGAGGGAGCACCTGGAAGATGGTGCCTGCGTCGCGTGCTC
GACAAAGGATATCAAGCACGTGCTGCCAACTTTACAGTGCACTGCTGCTG
TGTGCACTAAAAGCATCGAGGAGGGAGGTACGCGGCACTATGCCGTTTCC
TCTCTACTTTCTTTTGTTCTGGCGAGATCGATTCATATTTGTGTTCCTGG
GTCTTTGTCTGACATTCAAGCAAGTGTAATGCTTCTCACAAAGCCTGCGT
GACCTATAACTATATATACCTTGTTTGCCCTCGACACAAAATCCTTCCTT
CTGGTCTCTGGCTGTGTGTTTCGTTGTGACAGTAGTGCGAAGCCTGTCGA
ACCCACCATGGACACCTTTGAAGCCATCAGAAGAACGATGTTTTGTTGGT
CAGGTCACGGTCTTGGCACGTGTACTCTGATGTAGAGAGTTCGGAAAAAA
TCTTGAACTAACTATCGTTTCTGAAGCCTGTGTTCCTCTCTCATGTAGAC
TACGCTTGAGATAAAGTGCTTGTTGGGTGCGAAATGAGAGAAAATTTTGA
ATACGAGACCGCCAGGCTGACTCGAAGGTTCCTCAAGAGAAACGAAAAAG
GGCGAAATGACAAACGTTCTCTGTTTTGACGGCTTCACATACCATATGCT
CAACCGATTCTCCAGCCCGTTTCGCGGTTCATGACCCAACAGTAGGTACT
ACTGTAGGCACTTGGGACTGCGCTTGTGGCCTACACGTCGACAATCCACT
GGTACATATGTGCGTCCGTCACGCAAGCGTACGCCACTCATCCCCCCATT
TTCTCATTCTCACGGGCGCGACTTGCCTCAGCTTCTGCGTATTCTTCTGC
ACCAAAATGATCTGGAAGTGCCGGTACTCTGATCTGCCGTTATCCCGAAT
TCCCACTGCATTAATGATTATTCCGTTTCAGTTAGATCCGTCCAGCCATG
GCGTTTCTGTGCTCTGCCATGCGACGACAGATAGATATGTTGTCGACCGA
CCTCCCGCCTTGTCCCTTTGCTCAATCCACTATTTGCCCGATCTTTCGTA
TAGATGAGTACTGCGTGACGATCGGCGACGACCGCGCCAAGGAGCGGTGC
GTGGGGCATAGACTAGCAGGTGTCCCACGCAACAAGCACGACATGGTTGT
GCGCGTGCAACACCAACGCCGGCGTCAGCCGATGACCACATGCACCGAGT
GTAAACTCGCCGAGCACCACGTAAGTTGGTATGTTGTCCTATCGCTTGAG
TTCCCTTCGTAACCTAGATTCGTCGCCAAAGTACACCCCTCCTTTCTGAC
GAAGGCCCTAACTCATTGGTCCGAAAGGTCCAGCACTATTTCGGTGGCCG
CACTATCAACCCACGAAAGAGACATGGGGCGAGTGGAAAGTACGAAACCG
GTACGGTGCAGAAATCGATTTGAATATTGTTGTGCAGGCAACTAAAGGCA
AAACGAATAGGTCTACTCTTCTCGCGCAAAGTACCTCCAACTTGGTTTTG
GGGAGACAAGAAGGTGGCTATCCGTCATGCCTTGTGTTGATCGTCAGGTG
TGCTCAATGAAGCAACCACGTGTCAACAACGGACTGCAAGGAGCGATGAT
CTGCTCTTGGTGCCGGAAAAAGACCTCGCCGAAGAGACCCGAAAAGGTGC
GATGCACATATTTGTTTAGGGCACATGCTGACGGCGAGCGTGATGGTATC
GGACTTCTTGTCAGAGGCGTGGTCGCGGGTGTCTTCACTATTTGTTAAGT
TACACAGGGTCTGGGTGTTAGCAGCGTACCAGGGCATGATAACTCTGTTA
CCGTCGTCAAACCAAGAGGCCAACTCAAATGAATAACTATAGGATATTCA
CCTCTTTGCAGATGGTAGGATGCCTGCAGGACAGGTTGACTTGGGGGCGA
ACGCGCCAACCCGCCTCCCTGCCCGCTCATCCACCCCACCCGTTCCCCGT
CCCTCAGGGCCACTGCCCGAGTCCTCTGTACGGTGCCCAGAAAATGGGGG
TGAGCTTGTCAGGCGACGGTGGTGACGATGGTGGTGGCGGTGGTGCTGCT
GCTGCTGCTGTCAGCCGGGACACTCGCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1228:3592..7270+

>mRNA_E-fasciculatus_F_contig1228.1759.1 ID=mRNA_E-fasciculatus_F_contig1228.1759.1|Name=mRNA_E-fasciculatus_F_contig1228.1759.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1554bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1228:3592..7270+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTTGCGAAAGGTCTTGCTGAGAGCTTGGTCCCAGCCAGAGAAGAGGCCAT
TGGGGTCGGGAAGGACAGCATCGAGACCAAGGCGCTCGTCGAAGCTGCAA
GACGCTTGGAGTTTGCGAAAGGTCTTGCTGAGAGCTTGGTCCCAGCCAGA
GAAGAGGCCATTGGGGTCGGGAAGGACAGCATCGAGACCAAGGCGCTCGT
CGAAGCTGCAAGACGCTTGGAGGATGGCCTGAAGAAAGGCGGCCGGTCAG
ACAACCTCCCGCTCGTCAAGGGCCTAACCGAAGCAGTTGAAAGGTATTTG
AAGACGGTCTCCTCTTCGCCGAAGATCTCTGCCCTCCAGGATGGCCTGAA
GAAAGGCGGCCGGTCAGACAACCTCCCGCTCGTCAAGGGCCTAACCGAAG
CAGTTGAAAGGTATTTGAAGACGGTCTCCTCTTCGCCGAAGATCTCTGCC
CTCCAGGACGTGGTCACCACTGGGTTGGCATTTATCGTAAACGAGGAACG
GTGGAGGGAGCACCTGGAAGATGGTGCCTGCGTCGCGTGCTCGACAAAGG
ATATCAAGCACGTGCTGCCAACTTTACAGTGCACTGCTGCTGTGTGCACT
AAAAGCATCGAGGAGGGAGGACGTGGTCACCACTGGGTTGGCATTTATCG
TAAACGAGGAACGGTGGAGGGAGCACCTGGAAGATGGTGCCTGCGTCGCG
TGCTCGACAAAGGATATCAAGCACGTGCTGCCAACTTTACAGTGCACTGC
TGCTGTGTGCACTAAAAGCATCGAGGAGGGAGATGAGTACTGCGTGACGA
TCGGCGACGACCGCGCCAAGGAGCGGTGCGTGGGGCATAGACTAGCAGGT
GTCCCACGCAACAAGCACGACATGGTTGTGCGCGTGCAACACCAACGCCG
GCGTCAGCCGATGACCACATGCACCGAGTGTAAACTCGCCGAGCACCACA
TGAGTACTGCGTGACGATCGGCGACGACCGCGCCAAGGAGCGGTGCGTGG
GGCATAGACTAGCAGGTGTCCCACGCAACAAGCACGACATGGTTGTGCGC
GTGCAACACCAACGCCGGCGTCAGCCGATGACCACATGCACCGAGTGTAA
ACTCGCCGAGCACCACGTGTGCTCAATGAAGCAACCACGTGTCAACAACG
GACTGCAAGGAGCGATGATCTGCTCTTGGTGCCGGAAAAAGACCTCGCCG
AAGAGACCCGAAAAGGTGTGCTCAATGAAGCAACCACGTGTCAACAACGG
ACTGCAAGGAGCGATGATCTGCTCTTGGTGCCGGAAAAAGACCTCGCCGA
AGAGACCCGAAAAGGGCCACTGCCCGAGTCCTCTGTACGGTGCCCAGAAA
ATGGGGGTGAGCTTGTCAGGCGACGGTGGTGACGATGGTGGTGGCGGTGG
TGCTGCTGCTGCTGCTGTCAGCCGGGACACTCGCGGCCACTGCCCGAGTC
CTCTGTACGGTGCCCAGAAAATGGGGGTGAGCTTGTCAGGCGACGGTGGT
GACGATGGTGGTGGCGGTGGTGCTGCTGCTGCTGCTGTCAGCCGGGACAC
TCGC
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