mRNA_E-fasciculatus_F_contig12279.1757.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12279.1757.1
Unique NamemRNA_E-fasciculatus_F_contig12279.1757.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12279.1757.1 vs. uniprot
Match: D7FS56_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FS56_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 6.790e-27
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1 
Query:    4 GVPPHPSSFSPSQRTLSVMDGMSVCEVAWHEGGSLPETLYACLYLHPAVFSAVL 165
            GVPPHPSSF PSQRTLSV+DGMSVCEVAWHEGGSLPETLYACLYLHP VFSAVL
Sbjct:  133 GVPPHPSSFGPSQRTLSVLDGMSVCEVAWHEGGSLPETLYACLYLHPDVFSAVL 186
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BLAST of mRNA_E-fasciculatus_F_contig12279.1757.1 vs. uniprot
Match: A0A836CGZ5_9STRA (Mak10 subunit, NatC N-terminal acetyltransferase-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGZ5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 3.050e-10
Identity = 25/49 (51.02%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:   19 PSSFSPSQRTLSVMDGMSVCEVAWHEGGSLPETLYACLYLHPAVFSAVL 165
            P +F+       V+DG+  CE+AWH+GGSLPETLY CLY+HP+   A++
Sbjct:   66 PVTFADPGVVCDVLDGLLTCELAWHDGGSLPETLYTCLYVHPSALEALM 114
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BLAST of mRNA_E-fasciculatus_F_contig12279.1757.1 vs. uniprot
Match: A0A317XRG0_9BASI (Mak10-domain-containing protein n=1 Tax=Testicularia cyperi TaxID=1882483 RepID=A0A317XRG0_9BASI)

HSP 1 Score: 47.8 bits (112), Expect = 8.390e-5
Identity = 18/31 (58.06%), Postives = 22/31 (70.97%), Query Frame = 1 
Query:   49 LSVMDGMSVCEVAWHEGGSLPETLYACLYLH 141
            L +MD +  CE AWH+G SL +TLY CLY H
Sbjct:  142 LWIMDRLFACEAAWHQGSSLSQTLYTCLYFH 172
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12279.1757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS56_ECTSI6.790e-2794.44Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CGZ5_9STRA3.050e-1051.02Mak10 subunit, NatC N-terminal acetyltransferase-d... [more]
A0A317XRG0_9BASI8.390e-558.06Mak10-domain-containing protein n=1 Tax=Testicular... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12279contigE-fasciculatus_F_contig12279:3484..3648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.1e-22
Seed eggNOG ortholog2880.D7FS56
Preferred nameMAK10
KEGG koko:K20823
GOsGO:0003674,GO:0003824,GO:0004596,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006473,GO:0006474,GO:0006807,GO:0006914,GO:0008080,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010467,GO:0016236,GO:0016407,GO:0016410,GO:0016740,GO:0016746,GO:0016747,GO:0017196,GO:0018193,GO:0018206,GO:0019538,GO:0031248,GO:0031365,GO:0031414,GO:0031417,GO:0032991,GO:0034212,GO:0036211,GO:0043170,GO:0043412,GO:0043543,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051604,GO:0061919,GO:0071704,GO:1901564,GO:1902493,GO:1902494,GO:1990234
EggNOG free text desc.smooth muscle cell proliferation
EggNOG OGsKOG2343@1,KOG2343@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927734.6857088-CDS-E-fasciculatus_F_contig12279:3483..36481622927734.6857088-CDS-E-fasciculatus_F_contig12279:3483..3648Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12279 3484..3648 +
1695995671.7356465-CDS-E-fasciculatus_F_contig12279:3483..36481695995671.7356465-CDS-E-fasciculatus_F_contig12279:3483..3648Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12279 3484..3648 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12279.1757.1prot_E-fasciculatus_F_contig12279.1757.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12279 3484..3648 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12279.1757.1

>prot_E-fasciculatus_F_contig12279.1757.1 ID=prot_E-fasciculatus_F_contig12279.1757.1|Name=mRNA_E-fasciculatus_F_contig12279.1757.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=55bp
SGVPPHPSSFSPSQRTLSVMDGMSVCEVAWHEGGSLPETLYACLYLHPAV
FSAVL
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mRNA from alignment at E-fasciculatus_F_contig12279:3484..3648+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12279.1757.1 ID=mRNA_E-fasciculatus_F_contig12279.1757.1|Name=mRNA_E-fasciculatus_F_contig12279.1757.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=165bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12279:3484..3648+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGGGGTACCGCCGCACCCCTCTTCCTTCAGCCCCAGCCAGCGGACTCT
GTCCGTGATGGACGGAATGTCGGTGTGCGAGGTTGCCTGGCACGAAGGGG
GTTCGCTGCCGGAGACGCTGTACGCGTGCCTGTACTTGCACCCGGCCGTG
TTCTCCGCCGTGCTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12279:3484..3648+

>mRNA_E-fasciculatus_F_contig12279.1757.1 ID=mRNA_E-fasciculatus_F_contig12279.1757.1|Name=mRNA_E-fasciculatus_F_contig12279.1757.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12279:3484..3648+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGGGGGTACCGCCGCACCCCTCTTCCTTCAGCCCCAGCCAGCGGACTCT
GTCCGTGATGGACGGAATGTCGGTGTGCGAGGTTGCCTGGCACGAAGGGG
GTTCGCTGCCGGAGACGCTGTACGCGTGCCTGTACTTGCACCCGGCCGTG
TTCTCCGCCGTGCTGTCGGGGGTACCGCCGCACCCCTCTTCCTTCAGCCC
CAGCCAGCGGACTCTGTCCGTGATGGACGGAATGTCGGTGTGCGAGGTTG
CCTGGCACGAAGGGGGTTCGCTGCCGGAGACGCTGTACGCGTGCCTGTAC
TTGCACCCGGCCGTGTTCTCCGCCGTGCTG
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