prot_E-fasciculatus_F_contig12278.1756.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12278.1756.1
Unique Nameprot_E-fasciculatus_F_contig12278.1756.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length40
Homology
BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: D8LQB4_ECTSI (3\'-5\' exonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.340e-10
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0
Query:    1 YLGRSLSKKQQMSRWARRPLRHAQVTYAACDAL 33
            YLGRSLSK+QQMSRWARRPL+ AQV YAACDAL
Sbjct:  129 YLGRSLSKRQQMSRWARRPLQSAQVNYAACDAL 161          
BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: A0A6H5JNJ5_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.960e-10
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 0
Query:    1 YLGRSLSKKQQMSRWARRPLRHAQVTYAACDAL 33
            YLGRSLSK+QQMSRWARRPL+ AQV YAACDAL
Sbjct:  199 YLGRSLSKRQQMSRWARRPLQSAQVNYAACDAL 231          
BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: A0A2D4BG54_PYTIN (3'-5' exonuclease domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG54_PYTIN)

HSP 1 Score: 48.1 bits (113), Expect = 3.110e-5
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 0
Query:    1 YLGRSLSKKQQMSRWARRPLRHAQVTYAACDAL 33
            YLG+ L+K QQMS W RRPL  +Q+ YAACDAL
Sbjct:  167 YLGKRLTKTQQMSNWNRRPLTTSQIHYAACDAL 199          
BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: A0A835ZAR5_9STRA (Ribonuclease H-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR5_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.780e-5
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 0
Query:    1 YLGRSLSKKQQMSRWARRPLRHAQVTYAACDAL 33
            YL  SLSK QQMS WA RPL  +Q+ YAACDAL
Sbjct:  208 YLNCSLSKGQQMSNWANRPLSSSQIHYAACDAL 240          
BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: UPI0014584982 (exonuclease mut-7 homolog isoform X1 n=5 Tax=Pecten maximus TaxID=6579 RepID=UPI0014584982)

HSP 1 Score: 47.4 bits (111), Expect = 5.830e-5
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 0
Query:    2 LGRSLSKKQQMSRWARRPLRHAQVTYAACDA 32
            LGR LSK +QMS W RRPLR AQ+TYAA DA
Sbjct:  696 LGRPLSKTEQMSNWERRPLRPAQITYAALDA 726          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LQB4_ECTSI2.340e-1087.883\'-5\' exonuclease family protein n=1 Tax=Ectocar... [more]
A0A6H5JNJ5_9PHAE4.960e-1087.883'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A2D4BG54_PYTIN3.110e-566.673'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A835ZAR5_9STRA5.780e-569.70Ribonuclease H-like domain-containing protein (Fra... [more]
UPI00145849825.830e-574.19exonuclease mut-7 homolog isoform X1 n=5 Tax=Pecte... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..34
e-value: 1.5E-10
score: 42.5
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 1..33
e-value: 8.8E-6
score: 25.5
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 1..33

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12278contigE-fasciculatus_F_contig12278:3250..3369 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12278.1756.1mRNA_E-fasciculatus_F_contig12278.1756.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12278 3250..3369 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12278.1756.1 ID=prot_E-fasciculatus_F_contig12278.1756.1|Name=mRNA_E-fasciculatus_F_contig12278.1756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=40bp
YLGRSLSKKQQMSRWARRPLRHAQVTYAACDALGEGWVP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR0025623'-5'_exonuclease_dom
IPR036397RNaseH_sf