mRNA_E-fasciculatus_F_contig12278.1756.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12278.1756.1
Unique NamemRNA_E-fasciculatus_F_contig12278.1756.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: D8LQB4_ECTSI (3\'-5\' exonuclease family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQB4_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 2.340e-10
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 YLGRSLSKKQQMSRWARRPLRHAQVTYAACDAL 99
            YLGRSLSK+QQMSRWARRPL+ AQV YAACDAL
Sbjct:  129 YLGRSLSKRQQMSRWARRPLQSAQVNYAACDAL 161
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BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: A0A6H5JNJ5_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNJ5_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 4.960e-10
Identity = 29/33 (87.88%), Postives = 31/33 (93.94%), Query Frame = 1 
Query:    1 YLGRSLSKKQQMSRWARRPLRHAQVTYAACDAL 99
            YLGRSLSK+QQMSRWARRPL+ AQV YAACDAL
Sbjct:  199 YLGRSLSKRQQMSRWARRPLQSAQVNYAACDAL 231
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BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: A0A2D4BG54_PYTIN (3'-5' exonuclease domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BG54_PYTIN)

HSP 1 Score: 48.1 bits (113), Expect = 3.110e-5
Identity = 22/33 (66.67%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 YLGRSLSKKQQMSRWARRPLRHAQVTYAACDAL 99
            YLG+ L+K QQMS W RRPL  +Q+ YAACDAL
Sbjct:  167 YLGKRLTKTQQMSNWNRRPLTTSQIHYAACDAL 199
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BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: A0A835ZAR5_9STRA (Ribonuclease H-like domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAR5_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 5.780e-5
Identity = 23/33 (69.70%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 YLGRSLSKKQQMSRWARRPLRHAQVTYAACDAL 99
            YL  SLSK QQMS WA RPL  +Q+ YAACDAL
Sbjct:  208 YLNCSLSKGQQMSNWANRPLSSSQIHYAACDAL 240
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BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Match: UPI0014584982 (exonuclease mut-7 homolog isoform X1 n=5 Tax=Pecten maximus TaxID=6579 RepID=UPI0014584982)

HSP 1 Score: 47.4 bits (111), Expect = 5.830e-5
Identity = 23/31 (74.19%), Postives = 25/31 (80.65%), Query Frame = 1 
Query:    4 LGRSLSKKQQMSRWARRPLRHAQVTYAACDA 96
            LGR LSK +QMS W RRPLR AQ+TYAA DA
Sbjct:  696 LGRPLSKTEQMSNWERRPLRPAQITYAALDA 726
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12278.1756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LQB4_ECTSI2.340e-1087.883\'-5\' exonuclease family protein n=1 Tax=Ectocar... [more]
A0A6H5JNJ5_9PHAE4.960e-1087.883'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A2D4BG54_PYTIN3.110e-566.673'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A835ZAR5_9STRA5.780e-569.70Ribonuclease H-like domain-containing protein (Fra... [more]
UPI00145849825.830e-574.19exonuclease mut-7 homolog isoform X1 n=5 Tax=Pecte... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12278contigE-fasciculatus_F_contig12278:3250..3369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue2.5e-08
Seed eggNOG ortholog2880.D8LQB4
EggNOG free text desc.3'-5'-exoribonuclease activity involved in mature miRNA 3'-end processing
EggNOG OGsKOG2207@1,KOG2207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size120
Cds size120
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927734.649893-CDS-E-fasciculatus_F_contig12278:3249..33691622927734.649893-CDS-E-fasciculatus_F_contig12278:3249..3369Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12278 3250..3369 -
1695995671.7247021-CDS-E-fasciculatus_F_contig12278:3249..33691695995671.7247021-CDS-E-fasciculatus_F_contig12278:3249..3369Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12278 3250..3369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12278.1756.1prot_E-fasciculatus_F_contig12278.1756.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12278 3250..3369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12278.1756.1

>prot_E-fasciculatus_F_contig12278.1756.1 ID=prot_E-fasciculatus_F_contig12278.1756.1|Name=mRNA_E-fasciculatus_F_contig12278.1756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=40bp
YLGRSLSKKQQMSRWARRPLRHAQVTYAACDALGEGWVP*
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mRNA from alignment at E-fasciculatus_F_contig12278:3250..3369-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12278.1756.1 ID=mRNA_E-fasciculatus_F_contig12278.1756.1|Name=mRNA_E-fasciculatus_F_contig12278.1756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=120bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12278:3250..3369- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCTCGGACGCTCCCTGAGCAAGAAACAGCAGATGTCCCGGTGGGCACG
CCGCCCGCTGCGGCACGCTCAGGTCACCTACGCGGCGTGCGACGCCCTAG
GTGAGGGTTGGGTGCCCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12278:3250..3369-

>mRNA_E-fasciculatus_F_contig12278.1756.1 ID=mRNA_E-fasciculatus_F_contig12278.1756.1|Name=mRNA_E-fasciculatus_F_contig12278.1756.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=240bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12278:3250..3369- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TACCTCGGACGCTCCCTGAGCAAGAAACAGCAGATGTCCCGGTGGGCACG
CCGCCCGCTGCGGCACGCTCAGGTCACCTACGCGGCGTGCGACGCCCTAG
GTGAGGGTTGGGTGCCCTGATACCTCGGACGCTCCCTGAGCAAGAAACAG
CAGATGTCCCGGTGGGCACGCCGCCCGCTGCGGCACGCTCAGGTCACCTA
CGCGGCGTGCGACGCCCTAGGTGAGGGTTGGGTGCCCTGA
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