mRNA_E-fasciculatus_F_contig12261.1749.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12261.1749.1
Unique NamemRNA_E-fasciculatus_F_contig12261.1749.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: D7FRF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRF6_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 3.650e-38
Identity = 61/64 (95.31%), Postives = 64/64 (100.00%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPTGEWVATVCQDDKIRLYQ 192
            ASLDRSVRLWDARNVGAGTGSSGIGGM+H+AELPHFRSVNSAHFSPTGEW+ATVCQDDKIRLYQ
Sbjct:    9 ASLDRSVRLWDARNVGAGTGSSGIGGMQHVAELPHFRSVNSAHFSPTGEWMATVCQDDKIRLYQ 72
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: A0A836C879_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C879_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.710e-16
Identity = 35/63 (55.56%), Postives = 44/63 (69.84%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPTGEWVATVCQDDKIRLY 189
            ASLD +V LWDARN+G    +  +   K LA LPH RSVNSAHF+P G ++ T CQDD++ LY
Sbjct:    1 ASLDTTVCLWDARNMGKHHSAPKVSARKPLATLPHARSVNSAHFAPAGAYLVTTCQDDRLHLY 63
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: A0A2D4C066_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C066_PYTIN)

HSP 1 Score: 62.4 bits (150), Expect = 8.300e-10
Identity = 30/64 (46.88%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPTGEWVATVCQDDKIRLYQ 192
            ASLDR+V LWD R +     +        L  +PH RSVN A+FSP+GE + TVCQDD  R+++
Sbjct:  412 ASLDRTVSLWDVRKLSKSKNTP-------LVTMPHTRSVNCAYFSPSGEHLVTVCQDDYNRVFE 468
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: A0A1V9YZQ7_9STRA (WD repeat-containing protein 76-like n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YZQ7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 1.870e-8
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPTGEWVATVCQDDKIRLYQ 192
            ASLDR+V +WDAR                +A LPH RS+N A+FSP GE + TV QDD + +Y+
Sbjct:  285 ASLDRTVCIWDARKPATA-----------IATLPHHRSINCAYFSPNGEALVTVGQDDFVHVYE 337
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: A0A067CEG2_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CEG2_SAPPC)

HSP 1 Score: 58.2 bits (139), Expect = 2.570e-8
Identity = 31/63 (49.21%), Postives = 36/63 (57.14%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPTGEWVATVCQDDKIRLY 189
            ASLDR+V LWDAR                L  LPH RS+N A+FSP GE + TV QDD + LY
Sbjct:  294 ASLDRTVCLWDARQPST-----------PLNMLPHHRSINCAYFSPNGEALVTVGQDDHVHLY 345
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: A0A485KYN3_9STRA (Aste57867_13541 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KYN3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.580e-8
Identity = 29/64 (45.31%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPTGEWVATVCQDDKIRLYQ 192
            ASLDR+V+LWDAR + A            L  LPH +SVN A FSP G  + +VCQD+ + L++
Sbjct:  364 ASLDRTVKLWDARKLKAA-----------LVSLPHDKSVNGASFSPDGSSLVSVCQDNYVYLFR 416
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: A0A833WN18_PHYIN (WD domain G-beta repeat n=1 Tax=Phytophthora infestans TaxID=4787 RepID=A0A833WN18_PHYIN)

HSP 1 Score: 58.2 bits (139), Expect = 2.590e-8
Identity = 32/64 (50.00%), Postives = 40/64 (62.50%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPT-GEWVATVCQDDKIRLY 189
            ASLDR+V LWDARN+ +   +        LA LPH RSVN A+FSP  G W+ TV QD  I ++
Sbjct:  405 ASLDRTVCLWDARNLSSKKNTP-------LATLPHHRSVNCAYFSPRDGAWLVTVGQDSYIDMF 461
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: A0A7M7N7U2_STRPU (WD repeat-containing protein 76 n=1 Tax=Strongylocentrotus purpuratus TaxID=7668 RepID=A0A7M7N7U2_STRPU)

HSP 1 Score: 57.8 bits (138), Expect = 3.530e-8
Identity = 30/65 (46.15%), Postives = 41/65 (63.08%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSP-TGEWVATVCQDDKIRLYQ 192
            AS DR+  LWD R++       G G  K +AE+PHF+SV+SA FSP TG  + T   DDKI +++
Sbjct:  368 ASTDRTAALWDIRSM------KGKGTNKPIAEMPHFKSVSSAFFSPITGSKILTTSLDDKISIFE 426
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: A0A1V9ZLG3_9STRA (WD repeat-containing protein 76-like n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZLG3_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.230e-7
Identity = 28/63 (44.44%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPTGEWVATVCQDDKIRLY 189
            ASLDR+V +WDAR                L  LPH RSVN A++SP G+++ TV QDD + +Y
Sbjct:  294 ASLDRTVCIWDARKP-----------KNVLTSLPHGRSVNCAYYSPKGDFLVTVGQDDNVHVY 345
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BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Match: A0A0P1AYY8_PLAHL (WD40 protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AYY8_PLAHL)

HSP 1 Score: 56.2 bits (134), Expect = 1.240e-7
Identity = 31/64 (48.44%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:    1 ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPT-GEWVATVCQDDKIRLY 189
            ASLDR+V LWDAR +            K L  LPH RSVN A+FSP  G+W+ TV QD  I ++
Sbjct:  391 ASLDRTVCLWDARQLSTQK-------TKPLVTLPHHRSVNCAYFSPRDGDWLVTVGQDSYIDMF 447
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12261.1749.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FRF6_ECTSI3.650e-3895.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C879_9STRA1.710e-1655.56Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A2D4C066_PYTIN8.300e-1046.88Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A1V9YZQ7_9STRA1.870e-845.31WD repeat-containing protein 76-like n=1 Tax=Achly... [more]
A0A067CEG2_SAPPC2.570e-849.21Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A485KYN3_9STRA2.580e-845.31Aste57867_13541 protein n=1 Tax=Aphanomyces stella... [more]
A0A833WN18_PHYIN2.590e-850.00WD domain G-beta repeat n=1 Tax=Phytophthora infes... [more]
A0A7M7N7U2_STRPU3.530e-846.15WD repeat-containing protein 76 n=1 Tax=Strongyloc... [more]
A0A1V9ZLG3_9STRA1.230e-744.44WD repeat-containing protein 76-like n=1 Tax=Thrau... [more]
A0A0P1AYY8_PLAHL1.240e-748.44WD40 protein n=1 Tax=Plasmopara halstedii TaxID=47... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12261contigE-fasciculatus_F_contig12261:53..244 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.9
Seed ortholog evalue5.4e-29
Seed eggNOG ortholog2880.D7FRF6
KEGG rclassRC00508
KEGG koko:K08678
KEGG ReactionR01384
KEGG Pathwayko00520,ko01100,map00520,map01100
KEGG ModuleM00361
GOsGO:0000228,GO:0000785,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0008150,GO:0031974,GO:0031981,GO:0034399,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051726,GO:0065007,GO:0070013,GO:0080134,GO:0080135,GO:0097159,GO:1901363,GO:1901976,GO:2000001,GO:2001020
EggNOG free text desc.cellular response to DNA damage stimulus
EggNOG OGsKOG4328@1,KOG4328@2759
EC4.1.1.35
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927733.8933191-CDS-E-fasciculatus_F_contig12261:52..2441622927733.8933191-CDS-E-fasciculatus_F_contig12261:52..244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12261 53..244 -
1695995671.3011591-CDS-E-fasciculatus_F_contig12261:52..2441695995671.3011591-CDS-E-fasciculatus_F_contig12261:52..244Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12261 53..244 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12261.1749.1prot_E-fasciculatus_F_contig12261.1749.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12261 53..244 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12261.1749.1

>prot_E-fasciculatus_F_contig12261.1749.1 ID=prot_E-fasciculatus_F_contig12261.1749.1|Name=mRNA_E-fasciculatus_F_contig12261.1749.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=64bp
ASLDRSVRLWDARNVGAGTGSSGIGGMKHLAELPHFRSVNSAHFSPTGEW
VATVCQDDKIRLYQ
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mRNA from alignment at E-fasciculatus_F_contig12261:53..244-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12261.1749.1 ID=mRNA_E-fasciculatus_F_contig12261.1749.1|Name=mRNA_E-fasciculatus_F_contig12261.1749.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=192bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12261:53..244- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCATCGCTGGACCGAAGCGTGAGGCTGTGGGACGCTCGGAACGTTGGCGC
CGGCACTGGGTCCAGCGGCATCGGCGGCATGAAGCACTTGGCCGAGCTAC
CGCACTTCCGCAGCGTAAACAGCGCGCACTTCAGCCCCACTGGGGAGTGG
GTGGCCACGGTGTGTCAGGACGACAAGATCAGGCTGTACCAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12261:53..244-

>mRNA_E-fasciculatus_F_contig12261.1749.1 ID=mRNA_E-fasciculatus_F_contig12261.1749.1|Name=mRNA_E-fasciculatus_F_contig12261.1749.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=384bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12261:53..244- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCATCGCTGGACCGAAGCGTGAGGCTGTGGGACGCTCGGAACGTTGGCGC
CGGCACTGGGTCCAGCGGCATCGGCGGCATGAAGCACTTGGCCGAGCTAC
CGCACTTCCGCAGCGTAAACAGCGCGCACTTCAGCCCCACTGGGGAGTGG
GTGGCCACGGTGTGTCAGGACGACAAGATCAGGCTGTACCAAGCATCGCT
GGACCGAAGCGTGAGGCTGTGGGACGCTCGGAACGTTGGCGCCGGCACTG
GGTCCAGCGGCATCGGCGGCATGAAGCACTTGGCCGAGCTACCGCACTTC
CGCAGCGTAAACAGCGCGCACTTCAGCCCCACTGGGGAGTGGGTGGCCAC
GGTGTGTCAGGACGACAAGATCAGGCTGTACCAA
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