mRNA_E-fasciculatus_F_contig1226.1748.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1226.1748.1 vs. uniprot
Match: D7FMR2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR2_ECTSI) HSP 1 Score: 1642 bits (4251), Expect = 0.000e+0 Identity = 899/1130 (79.56%), Postives = 951/1130 (84.16%), Query Frame = 2
Query: 140 MPAPTATPADDDELGASERTIARGALHHRQFRQSQHLRQDKVRALRAIIADDGADDAPADSAMNNNSGNIDRVGGGTTGGPLPAGQELGTRMSSVATRTTTALLSETKEAEEEEDNRGHAQDENEVLVHIPDDSVRAAATAQSGTPVSAAGATLAAXXXTRRASGVAGDHGSRNDGDDIGASQANDHTTTIELNQYLWRLEEQRHPLGACDTSGPPTGDNQGEAGKNDQQQGWASRDATTKVLSARDVMDRRNLLEYAATLGKASHFEDLARWLRWKLGVGGLVSQLREPGVDGTPMLFQAVNIDECFKAVTKASPLRKPIVLLDTLGAGGVAQQIRATDKKGMTLLMHVTRFAGSVEVLSSALELVKALTSRQQGLCHLRARDAQGRTLVHHAAEGRTEEMLPKVMELISKADLWVIDESDSESSNLRQYLSTRTDRHGRSPALCALGRKGTPRASLEKSIGVLLAGAPAT----LVNDDADDAHAAEGHLLTSPASPALSRRLRLMFQAPEGGGGKGARGNSPLCWVLHAARGGIEAFNLAYEGIRGQEEEANERSGLDLVRALGFGFPSSPPLTPEEFDKRCTKLFAQAALGGDRAVLERVASGLCLGAVPSDKRERYWATKADYPLDASDFLRAAHQADRMSAEDYTKKHHGFVEDESVGVGAAIIPFASTTTAGSTG-----VVGEATDGAVKNDSADKGGKD-KLKASLFALTILSGSKEAVRWAANFVRDNSSNADEAAIKKCNGVASHGESDDIAGASVHPR-EAADELFREELLLRVGPPTELSSXXXXXXXXXXXXXXKKMEERPTPNADAASVRRHFTPLAGAVFCGNADMFTKVLSAYKEGAHGGSSTDRNNASSGGNSTTVGFPESEIIAQTAAVLAKPTYKNKETHEDSGPMVAYERGSGDDGIEPVPPEVRLLLRGCCGPEAMQEVVDVIRSEQFSKAVEEAEWFDSLSTAKQAAAEGTFDGLRSLIEKGWNCHAHLATLIADIGDAEEQVIATVLCAVENSSNPFVTSAIASVCIAKRGRDWSKDRSGLARLQREIDQFTTELLGKLPQTVKGVGLELMSSFEQPGLGKNDEADREEERATEDELAQRKNIMGNHVGYIAVVVHCLFSRLGGGG 3496
M APTAT ADDDELG S RTIAR AL HR FRQSQ+ DKVRALRAIIA+DGADD PAD +N+NSGN DRVGGGT+G PLPAGQELGTRMSS A RTT A LSETK A+ E DNRG AQDE E LVHIPD+S AA+ Q PVSAAGATLAA TR ASGVAGDHG R++GDD G SQA+D T T+ELN+YLWRLEE+RHPLG CDTS PP DNQGEAG+ QQQ WASRDATTKVLSARDVMDRR+LLEYAA LGKASHFEDLA WLRWKLGVGGLV+QLREPGVDG P+LFQAVNIDECFKAVTK VLLDTLGAGGVAQQIRATD+KGMTLLMHV RFAGSVEV SSAL LVK LTSRQQGLCHLRARDA+GRTLVHHAAEGRTEEMLPKVME++S+ADLWVIDESDSES++LRQYLSTRTDRHGRSPALCALGRKG PRASLEKSI VLLAGAP + LVN+ AD AAEG+L ASPALS RLRLMFQAPEGGGGKG RGNSPLCWVLHAARGGIEAFNLAY+GIRGQEE++N RS LDLV+AL FGFPSSPP TPEEFDKRC KLFAQAALGGDRAVLERVASGLC GA+PSDKRERYWA KADYPLD DFLRAAHQADRMSAEDYTKKHHGFVEDESVGVGAAIIP AS TTAGS+G +VGEATD SADKGG++ KLK SLFALTILSGSKEAVRWAA FVRDNSSNADEAAI KCN VA SD +AG SVH R EAAD+LFREELLLR+ S KMEE TPNADAAS+RRHFTPLAGAVFCGNADMF KVL AYKEGAHGGS+T GG +T VGFPESEIIAQTAAVL+ TYK+KET EDSGPM AYE G GD G E VPPEVRLLLRGCCGPEAMQEVVD + S QFSKAVE+AEW DSLSTAKQAAAEGTFDGLR+LIEKGWNCHAHLATLI DIGDAEEQVIATV+CAVENSSNPFVTSAIASVC+AK GRD SKDR GLARLQ EIDQFTTELLGKLPQTVKGVGLEL+SSFEQP LGKNDE D EEE ATE ELA+RKNIM NHVGYIAVVVHCL GGG
Sbjct: 1 MQAPTATSADDDELGTSHRTIARRALLHRTFRQSQY---DKVRALRAIIAEDGADDDPADRGINSNSGNNDRVGGGTSGRPLPAGQELGTRMSSAAARTT-ATLSETKGADHE-DNRGQAQDEKEDLVHIPDESAYVAASTQLVPPVSAAGATLAAEGATRHASGVAGDHGIRSNGDDNGRSQAHDDTATVELNKYLWRLEEKRHPLGGCDTSVPPIRDNQGEAGQPYQQQSWASRDATTKVLSARDVMDRRSLLEYAAALGKASHFEDLALWLRWKLGVGGLVNQLREPGVDGAPLLFQAVNIDECFKAVTK--------VLLDTLGAGGVAQQIRATDQKGMTLLMHVARFAGSVEVFSSALHLVKTLTSRQQGLCHLRARDAEGRTLVHHAAEGRTEEMLPKVMEVVSRADLWVIDESDSESTDLRQYLSTRTDRHGRSPALCALGRKGNPRASLEKSIDVLLAGAPPSGSTALVNNGAD---AAEGNLPVPAASPALSHRLRLMFQAPEGGGGKGGRGNSPLCWVLHAARGGIEAFNLAYDGIRGQEEKSNRRSDLDLVKALAFGFPSSPPFTPEEFDKRCAKLFAQAALGGDRAVLERVASGLCSGAIPSDKRERYWAIKADYPLDPPDFLRAAHQADRMSAEDYTKKHHGFVEDESVGVGAAIIPGASATTAGSSGSTDVGLVGEATD------SADKGGQNNKLKGSLFALTILSGSKEAVRWAAKFVRDNSSNADEAAITKCNSVAGGDGSDGVAGDSVHLRAEAADKLFREELLLRMPSKPVSPSRAADETDITGGGGETKMEEGQTPNADAASMRRHFTPLAGAVFCGNADMFKKVLHAYKEGAHGGSNT----GGGGGTNTPVGFPESEIIAQTAAVLSNHTYKSKETDEDSGPMAAYESGPGDGGTEMVPPEVRLLLRGCCGPEAMQEVVDEVGSGQFSKAVEQAEWIDSLSTAKQAAAEGTFDGLRALIEKGWNCHAHLATLIGDIGDAEEQVIATVMCAVENSSNPFVTSAIASVCMAKHGRDCSKDRLGLARLQEEIDQFTTELLGKLPQTVKGVGLELISSFEQPDLGKNDEPDGEEEPATEAELARRKNIMANHVGYIAVVVHCLILDWEGGG 1104
BLAST of mRNA_E-fasciculatus_F_contig1226.1748.1 vs. uniprot
Match: A0A6H5K219_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K219_9PHAE) HSP 1 Score: 705 bits (1820), Expect = 1.100e-239 Identity = 394/526 (74.90%), Postives = 422/526 (80.23%), Query Frame = 2
Query: 296 GADDAPADSAMNNNSGNIDRVGGGTTGGPLPAGQELGTRMSSVATRTTTALLSETKEAEEEEDNRGHAQDENEVLVHIPDDSVRAAATAQSGTPVSAAGATLAAXXXTRRASGVAGDHGSRNDGDDIGASQANDHTTTIELNQYLWRLEEQRHPLGACDTSGPPTGDNQGEAGKNDQQQGWASRDATTKVLSARDVMDRRNLLEYAATLGKASHFEDLARWLRWKLGVGGLVSQLREPGVDGTPMLFQAVNIDECFKAVTKASPLRKPI-----------VLLDTLGAGGVAQQIRATDKKGMTLLMHVTRFAGSVEVLSSALELVKALTSRQQGLCHLRARDAQGRTLVHHAAEGRTEEMLPKVMELISKADLWVIDESDSESSNLRQYLSTRTDR-----------------------------HGRSPALCALGRKGTPRASLEKSIGVLLAGAP----ATLVNDDADDAHAAEGHLLTSPASPALSRRLRLMFQAPEGGGGKGARGNSPLCWVLHAARGGIE 1741
G DDAPADS +N+NS N DRVGGGT+ PLPA QELGTR+SSVA RTTTAL SETKEAE E DNRG A+DE E LVHIPDDS AA+ + G PVSAAGATLAA TR ASGVAGDHGSR+ G D G SQAND T+ELN+YLWRLEE+R PLG CDTS PPTGDNQGEAG+ +QQQ WASRDA TKVLSARDVMDRR++LEYAA LGKASHFEDLARWLRWKLGVG LV+QLREPGVDG P+LFQAVN+DECFKAVTKASPL KP VLLDTLGAGGVAQQIRATD+KGMTLLMHV R AGSVEV SSAL LVK L+SRQQGLCHLRARDA+GRTL HHAAEGRTEEMLPKVME++S+ADLWVIDESDSES++LRQYLSTRTDR HGRSPALCALGRKGTPRASLEKSI VLLAGAP TLVN+DAD AAEGHL AS AL RRLRL+FQAPEGGGGKG RGNSPLCWVLHAARGGIE
Sbjct: 6 GQDDAPADSDINSNSCNNDRVGGGTSVRPLPARQELGTRISSVAARTTTAL-SETKEAEHE-DNRGQARDEKEDLVHIPDDSAYVAASTRLGPPVSAAGATLAAEGATRHASGVAGDHGSRSKGVDNGGSQANDAAATVELNKYLWRLEEKRQPLGGCDTSLPPTGDNQGEAGQPNQQQSWASRDAATKVLSARDVMDRRSILEYAAALGKASHFEDLARWLRWKLGVGSLVNQLREPGVDGAPLLFQAVNVDECFKAVTKASPLGKPPCRASRTSNYHRVLLDTLGAGGVAQQIRATDQKGMTLLMHVARSAGSVEVFSSALHLVKTLSSRQQGLCHLRARDAEGRTLAHHAAEGRTEEMLPKVMEVVSQADLWVIDESDSESTDLRQYLSTRTDRQEDACCWFSFLRLQSPRVDSQPQNRHVLRHGRSPALCALGRKGTPRASLEKSIRVLLAGAPPSGSTTLVNNDAD---AAEGHLPIPAASTALCRRLRLIFQAPEGGGGKGGRGNSPLCWVLHAARGGIE 526
BLAST of mRNA_E-fasciculatus_F_contig1226.1748.1 vs. uniprot
Match: D8LH99_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH99_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 6.960e-15 Identity = 51/119 (42.86%), Postives = 71/119 (59.66%), Query Frame = 2
Query: 2990 SLSTAKQAAAEGTFDGLRSLIEKGWNCHAH-LATLIADIGDAEEQVIATVLCAVENSSNPFVTSAIASVCIAKRGRDWSKDRSGLARLQREIDQFTTELLGKLPQTVKGVGLELMSSFE 3343
S K+AA GTF LR L+++G+ H H + L+ +IGD E+ +I T+L V N+SNPF A S + D + GL RLQ ID FT ELL KLP+TV+G+G+EL+ +
Sbjct: 681 SRRAVKEAAKRGTFRSLRDLVQEGFPLHEHHIPALLENIGDHEKDIIETILATVTNASNPFAMGAGLSRTLRTSEVDHPMHQLGLRRLQSIIDDFTMELLDKLPRTVRGMGMELIGGHQ 799
BLAST of mRNA_E-fasciculatus_F_contig1226.1748.1 vs. uniprot
Match: D7FX79_ECTSI (Ankyrin Repeat Transient Receptor Potential Channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX79_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 7.230e-8 Identity = 31/57 (54.39%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 3622 LDPLQQALTRGSAAHDFINAPLVLDYLELKWKCTTPNLDRRNPLDYTINEGFSTYNS 3792
+DPLQ+AL RGS A DF+++PLVLDY+ +K+ CT PN + + TIN GF TYN+
Sbjct: 839 MDPLQRALDRGSKALDFVDSPLVLDYIHVKFSCTLPNWASSSSIPKTINAGFYTYNA 895
BLAST of mRNA_E-fasciculatus_F_contig1226.1748.1 vs. uniprot
Match: D8LHA0_ECTSI (Transient Receptor Potential Channel. Partial sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHA0_ECTSI) HSP 1 Score: 68.9 bits (167), Expect = 7.920e-8 Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 3622 LDPLQQALTRGSAAHDFINAPLVLDYLELKWKCTTPNLDRRNPLDYTINEGFSTY 3786
LDPL++AL RGS A DF+N PLV DY+ +K+ CT P+ RNP T+NEGF Y
Sbjct: 907 LDPLRRALDRGSEALDFLNTPLVKDYVHIKFACTLPSWTSRNPFQPTVNEGFFKY 961
BLAST of mRNA_E-fasciculatus_F_contig1226.1748.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE) HSP 1 Score: 62.4 bits (150), Expect = 7.550e-6 Identity = 29/55 (52.73%), Postives = 39/55 (70.91%), Query Frame = 1
Query: 3622 LDPLQQALTRGSAAHDFINAPLVLDYLELKWKCTTPNLDRRNPLDYTINEGFSTY 3786
+DPLQ+AL RGS A F+++PLVLDY+ +K+ CT PN + + TIN GF TY
Sbjct: 839 MDPLQRALDRGSKALFFVDSPLVLDYIYVKFSCTLPNWASSSSIPKTINAGFYTY 893 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1226.1748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1226.1748.1 >prot_E-fasciculatus_F_contig1226.1748.1 ID=prot_E-fasciculatus_F_contig1226.1748.1|Name=mRNA_E-fasciculatus_F_contig1226.1748.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1123bp MPAPTATPADDDELGASERTIARGALHHRQFRQSQHLRQDKVRALRAIIAback to top mRNA from alignment at E-fasciculatus_F_contig1226:266..16306- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1226.1748.1 ID=mRNA_E-fasciculatus_F_contig1226.1748.1|Name=mRNA_E-fasciculatus_F_contig1226.1748.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=16041bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1226:266..16306- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1226:266..16306- >mRNA_E-fasciculatus_F_contig1226.1748.1 ID=mRNA_E-fasciculatus_F_contig1226.1748.1|Name=mRNA_E-fasciculatus_F_contig1226.1748.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=6738bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1226:266..16306- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |