mRNA_E-fasciculatus_F_contig12258.1746.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12258.1746.1
Unique NamemRNA_E-fasciculatus_F_contig12258.1746.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12258.1746.1 vs. uniprot
Match: D7FIS1_ECTSI (Enoyl-CoA hydratase/isomerase family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIS1_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.590e-11
Identity = 36/38 (94.74%), Postives = 36/38 (94.74%), Query Frame = 1 
Query:    1 RLSELEEALAADGGDDPASVLRRFASGAADPASSMLAQ 114
            RLSELEEALAADGGDDPASVL RFASGA DPASSMLAQ
Sbjct:  213 RLSELEEALAADGGDDPASVLGRFASGAGDPASSMLAQ 250
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12258.1746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIS1_ECTSI1.590e-1194.74Enoyl-CoA hydratase/isomerase family protein n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12258contigE-fasciculatus_F_contig12258:26..143 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.1
Seed ortholog evalue8.4e-09
Seed eggNOG ortholog2880.D7FIS1
KEGG rclassRC00004,RC00014,RC00137
KEGG koko:K05605
KEGG ReactionR03158,R05064
KEGG Pathwayko00280,ko00410,ko00640,ko01100,ko01200,map00280,map00410,map00640,map01100,map01200
KEGG ModuleM00013
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0016020,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.3-hydroxyisobutyryl-CoA hydrolase activity
EggNOG OGsCOG1024@1,KOG1684@2759
EC3.1.2.4
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size118
Cds size117
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927733.4583106-CDS-E-fasciculatus_F_contig12258:25..1421622927733.4583106-CDS-E-fasciculatus_F_contig12258:25..142Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12258 26..142 +
1695995671.0289736-CDS-E-fasciculatus_F_contig12258:25..1421695995671.0289736-CDS-E-fasciculatus_F_contig12258:25..142Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12258 26..142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12258.1746.1prot_E-fasciculatus_F_contig12258.1746.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12258 26..142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12258.1746.1

>prot_E-fasciculatus_F_contig12258.1746.1 ID=prot_E-fasciculatus_F_contig12258.1746.1|Name=mRNA_E-fasciculatus_F_contig12258.1746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=39bp
RLSELEEALAADGGDDPASVLRRFASGAADPASSMLAQA
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mRNA from alignment at E-fasciculatus_F_contig12258:26..143+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12258.1746.1 ID=mRNA_E-fasciculatus_F_contig12258.1746.1|Name=mRNA_E-fasciculatus_F_contig12258.1746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=118bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12258:26..143+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTGTCGGAATTGGAGGAGGCCCTTGCAGCAGACGGAGGGGACGACCC
CGCATCGGTGCTTCGGAGGTTCGCCTCAGGGGCGGCCGATCCGGCTTCCT
CCATGCTTGCGCAGGCAA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12258:26..143+

>mRNA_E-fasciculatus_F_contig12258.1746.1 ID=mRNA_E-fasciculatus_F_contig12258.1746.1|Name=mRNA_E-fasciculatus_F_contig12258.1746.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=234bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12258:26..143+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTGTCGGAATTGGAGGAGGCCCTTGCAGCAGACGGAGGGGACGACCC
CGCATCGGTGCTTCGGAGGTTCGCCTCAGGGGCGGCCGATCCGGCTTCCT
CCATGCTTGCGCAGGCAAGGCTGTCGGAATTGGAGGAGGCCCTTGCAGCA
GACGGAGGGGACGACCCCGCATCGGTGCTTCGGAGGTTCGCCTCAGGGGC
GGCCGATCCGGCTTCCTCCATGCTTGCGCAGGCA
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