mRNA_E-fasciculatus_F_contig12251.1743.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12251.1743.1
Unique NamemRNA_E-fasciculatus_F_contig12251.1743.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12251.1743.1 vs. uniprot
Match: D8LSQ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSQ4_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 5.510e-24
Identity = 87/173 (50.29%), Postives = 89/173 (51.45%), Query Frame = 1 
Query:    1 TGSASGCSLEDMPCYSGNSSTAQRPTVPSPSPTEAATTAPVQFDSGREMEGFFTASPTGAPTAYDHRGSSLAGTASPTPAAPIASADGGVEEAPEETRSPVADNDDTESG---AGSGFNSAGTSSGGGDFDGAAE-AGDSAACVAWSAATPVPRAVVTLGVALLLAARNAAAR 507
            TG A GCSLEDMPCYSGNSS AQ                           G                                        EAP  TRSPVA NDDT SG   AGSGFNSAGTSSGGGDFDGAAE AGD AA VAWS AT VPRAVVTLGV L LAAR+AAA+
Sbjct:  180 TGPAFGCSLEDMPCYSGNSSAAQTQPXXXXXXXXXXXXXXXXXXXXXXXXG----------------------------------------EAPAATRSPVAGNDDTGSGGIGAGSGFNSAGTSSGGGDFDGAAEEAGDGAARVAWSTATAVPRAVVTLGVTLFLAARHAAAK 312
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12251.1743.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSQ4_ECTSI5.510e-2450.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12251contigE-fasciculatus_F_contig12251:2..511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_003010.1
Exons1
Model size510
Cds size510
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927733.2507849-CDS-E-fasciculatus_F_contig12251:1..5111622927733.2507849-CDS-E-fasciculatus_F_contig12251:1..511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12251 2..511 +
1695995670.94908-CDS-E-fasciculatus_F_contig12251:1..5111695995670.94908-CDS-E-fasciculatus_F_contig12251:1..511Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12251 2..511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12251.1743.1prot_E-fasciculatus_F_contig12251.1743.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12251 2..511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12251.1743.1

>prot_E-fasciculatus_F_contig12251.1743.1 ID=prot_E-fasciculatus_F_contig12251.1743.1|Name=mRNA_E-fasciculatus_F_contig12251.1743.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=170bp
TGSASGCSLEDMPCYSGNSSTAQRPTVPSPSPTEAATTAPVQFDSGREME
GFFTASPTGAPTAYDHRGSSLAGTASPTPAAPIASADGGVEEAPEETRSP
VADNDDTESGAGSGFNSAGTSSGGGDFDGAAEAGDSAACVAWSAATPVPR
AVVTLGVALLLAARNAAAR*
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mRNA from alignment at E-fasciculatus_F_contig12251:2..511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12251.1743.1 ID=mRNA_E-fasciculatus_F_contig12251.1743.1|Name=mRNA_E-fasciculatus_F_contig12251.1743.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=510bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12251:2..511+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCGGCTCCGCTTCCGGCTGCTCGCTGGAAGACATGCCGTGCTACAGTGG
CAACTCGAGCACCGCCCAGCGCCCAACCGTCCCCAGCCCGTCTCCCACGG
AGGCGGCAACGACGGCGCCCGTGCAATTCGATTCCGGACGTGAGATGGAA
GGCTTCTTCACCGCTTCCCCTACCGGCGCGCCTACGGCATACGATCATCG
AGGCTCGTCCTTGGCGGGGACCGCTAGCCCAACGCCCGCTGCTCCGATCG
CTTCAGCAGACGGTGGCGTCGAGGAGGCTCCGGAGGAGACCCGGTCGCCG
GTGGCGGATAACGACGACACGGAAAGCGGTGCAGGTAGCGGTTTCAACTC
GGCTGGCACTTCGTCGGGCGGGGGCGACTTCGACGGGGCTGCGGAGGCCG
GGGACAGCGCCGCTTGCGTTGCTTGGTCTGCAGCAACGCCCGTGCCCCGC
GCGGTTGTTACCCTTGGCGTCGCCCTTTTGCTGGCAGCGAGGAATGCTGC
TGCAAGGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12251:2..511+

>mRNA_E-fasciculatus_F_contig12251.1743.1 ID=mRNA_E-fasciculatus_F_contig12251.1743.1|Name=mRNA_E-fasciculatus_F_contig12251.1743.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1020bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12251:2..511+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACCGGCTCCGCTTCCGGCTGCTCGCTGGAAGACATGCCGTGCTACAGTGG
CAACTCGAGCACCGCCCAGCGCCCAACCGTCCCCAGCCCGTCTCCCACGG
AGGCGGCAACGACGGCGCCCGTGCAATTCGATTCCGGACGTGAGATGGAA
GGCTTCTTCACCGCTTCCCCTACCGGCGCGCCTACGGCATACGATCATCG
AGGCTCGTCCTTGGCGGGGACCGCTAGCCCAACGCCCGCTGCTCCGATCG
CTTCAGCAGACGGTGGCGTCGAGGAGGCTCCGGAGGAGACCCGGTCGCCG
GTGGCGGATAACGACGACACGGAAAGCGGTGCAGGTAGCGGTTTCAACTC
GGCTGGCACTTCGTCGGGCGGGGGCGACTTCGACGGGGCTGCGGAGGCCG
GGGACAGCGCCGCTTGCGTTGCTTGGTCTGCAGCAACGCCCGTGCCCCGC
GCGGTTGTTACCCTTGGCGTCGCCCTTTTGCTGGCAGCGAGGAATGCTGC
TGCAAGGTAGACCGGCTCCGCTTCCGGCTGCTCGCTGGAAGACATGCCGT
GCTACAGTGGCAACTCGAGCACCGCCCAGCGCCCAACCGTCCCCAGCCCG
TCTCCCACGGAGGCGGCAACGACGGCGCCCGTGCAATTCGATTCCGGACG
TGAGATGGAAGGCTTCTTCACCGCTTCCCCTACCGGCGCGCCTACGGCAT
ACGATCATCGAGGCTCGTCCTTGGCGGGGACCGCTAGCCCAACGCCCGCT
GCTCCGATCGCTTCAGCAGACGGTGGCGTCGAGGAGGCTCCGGAGGAGAC
CCGGTCGCCGGTGGCGGATAACGACGACACGGAAAGCGGTGCAGGTAGCG
GTTTCAACTCGGCTGGCACTTCGTCGGGCGGGGGCGACTTCGACGGGGCT
GCGGAGGCCGGGGACAGCGCCGCTTGCGTTGCTTGGTCTGCAGCAACGCC
CGTGCCCCGCGCGGTTGTTACCCTTGGCGTCGCCCTTTTGCTGGCAGCGA
GGAATGCTGCTGCAAGGTAG
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