mRNA_E-fasciculatus_F_contig12247.1738.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: D7G1S4_ECTSI (DEAD box helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1S4_ECTSI) HSP 1 Score: 533 bits (1373), Expect = 6.020e-185 Identity = 266/271 (98.15%), Postives = 269/271 (99.26%), Query Frame = 1
Query: 1 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRG+EGPIVVILAPTRELAGQIY+EANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLK+TNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDI QVVHVLSGDALKWKWFSDNVPAFVAKGKV V
Sbjct: 167 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGQEGPIVVILAPTRELAGQIYSEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKSTNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIHQVVHVLSGDALKWKWFSDNVPAFVAKGKVLV 437
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A6H5KLM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLM8_9PHAE) HSP 1 Score: 422 bits (1085), Expect = 2.440e-144 Identity = 211/213 (99.06%), Postives = 213/213 (100.00%), Query Frame = 1
Query: 1 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 639
VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIV+GKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMM+LDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ
Sbjct: 249 VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVKGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMVLDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQ 461
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A835ZDT0_9STRA (Putative DEAD/DEAH box RNA helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDT0_9STRA) HSP 1 Score: 342 bits (876), Expect = 6.890e-114 Identity = 168/236 (71.19%), Postives = 198/236 (83.90%), Query Frame = 1
Query: 109 QGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFN-LTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
+G EAPTPIQAQALPV +SGRD+IGVA+TGSGKT AFVWP LVH+M QREI G EGPI VIL+PTRELA QI+ +A KFAK+ G VCAV+GGAGKWEMQKAL+EGPEIVVATPGR+IEMIK+KATN+ RCT ++LDEADRMFD+GF YQMRSIV Q RP RQT++FSATFKR+V+QLA D+L DPV +++G +T+NEDIRQVVHVL DA KW W + +P FVA GKV +
Sbjct: 33 EGLEAPTPIQAQALPVALSGRDLIGVAKTGSGKTFAFVWPVLVHVMAQREIEDG-EGPIAVILSPTRELATQIHGQAKKFAKQLGANVCAVFGGAGKWEMQKALREGPEIVVATPGRLIEMIKIKATNLARCTCVVLDEADRMFDLGFGYQMRSIVDQVRPSRQTMLFSATFKRKVEQLARDVLTDPVRINVGHAGAMTSNEDIRQVVHVLPSDAAKWSWLTSELPGFVANGKVLI 267
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A7S3UTY6_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UTY6_HETAK) HSP 1 Score: 335 bits (859), Expect = 5.960e-111 Identity = 168/258 (65.12%), Postives = 196/258 (75.97%), Query Frame = 1
Query: 40 VPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
+P P+ SF+HAG D L + R G E PTPIQAQALPV + GRD+IG+A+TGSGKT AF WP L H +DQR I +G EGPI VIL+PTRELA QIY E KFAK G KVCA+ GGAGK+EMQK LK GPE+VVATPGR+IEMIK KATNMRRCT+ +LDEADRMF+MGFEYQMRSIV Q RPDRQTLMFSATFK+++Q LA DIL DPV + +G ANEDI Q++ V+ A KW W + + FV GKV V
Sbjct: 21 LPRPLPSFRHAGLDPKLAQTIARLGLENPTPIQAQALPVALGGRDLIGIAKTGSGKTYAFAWPVLTHALDQRYIEKG-EGPIAVILSPTRELASQIYAEVKKFAKPLGAKVCALIGGAGKYEMQKELKTGPEVVVATPGRLIEMIKCKATNMRRCTICVLDEADRMFEMGFEYQMRSIVDQIRPDRQTLMFSATFKKKIQILARDILRDPVKITVGLVG-QANEDIHQIITVMHDSAAKWNWLAQRMAEFVQAGKVLV 276
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A443SEW0_9ACAR (RNA helicase (Fragment) n=1 Tax=Leptotrombidium deliense TaxID=299467 RepID=A0A443SEW0_9ACAR) HSP 1 Score: 307 bits (786), Expect = 1.560e-98 Identity = 153/277 (55.23%), Postives = 201/277 (72.56%), Query Frame = 1
Query: 4 SVEAGKQRNDTGV-------PAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
+VE + RN G+ P PV SF H GFD+ L+ + +Q + PTPIQAQ +PVV+SGRD+IG+A+TGSGKT A++WP LVH+MDQ+E+ G +GPI +ILAPTREL+ QIY EA KF K YG V YGGA K+E+ K ++ G EI+VATPGRMI+MIK+KATN+RR TM++LDEADRMFDMGFE Q+RSI RPDRQ LMFSATFK++V+++A D+L DP+ V G ANED+ Q+V VL+ + KW+W + + F + G V +
Sbjct: 215 TVEVNELRNRLGIRVLGASPPKPVTSFAHFGFDEQLMKIIRKQEYTQPTPIQAQGIPVVLSGRDLIGIAKTGSGKTAAYIWPMLVHIMDQKELEPG-DGPIGLILAPTRELSQQIYIEAKKFGKAYGVSVICAYGGANKYELSKDMEAGAEIIVATPGRMIDMIKMKATNLRRVTMLVLDEADRMFDMGFEVQVRSICDHVRPDRQCLMFSATFKKKVERVARDVLTDPIKVIQGELG-EANEDVEQIVKVLADGSEKWEWLNAKLVEFTSNGSVLI 489
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A4D9D4S8_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4S8_9STRA) HSP 1 Score: 313 bits (803), Expect = 3.280e-98 Identity = 157/256 (61.33%), Postives = 200/256 (78.12%), Query Frame = 1
Query: 49 PVQSFKHA-GFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
P+ SFKHA GF + LL E++++GF+APTPIQAQALP+ ++GRD++G+AQTGSGKTLAFVWP+LVHLMDQ E+V+G EGPIV+ILAPTRELA QIY EA KFAK +G +V AV+GGAGKWE K LK G EI++ATPGR++E +K KAT + RCT ++LDEADRMFD+GFE Q+ S++ Q RPDRQ+LMFSATFKR+V+ LA +L DP+ + G ANED+RQ V V+ + K +W P+ V GKV V
Sbjct: 294 PIVSFKHATGFSETLLREIIKRGFQAPTPIQAQALPLALAGRDVLGIAQTGSGKTLAFVWPALVHLMDQPEVVKG-EGPIVLILAPTRELASQIYVEALKFAKPHGARVAAVFGGAGKWEQSKLLKAGVEILIATPGRLLEHLKGKATTLFRCTFLVLDEADRMFDLGFESQIHSVLGQIRPDRQSLMFSATFKRKVENLARKMLRDPIRIVCGRAG-QANEDVRQEVVVVPREEGKEEWLFQKFPSLVEAGKVLV 547
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A7S2S1C1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S1C1_9STRA) HSP 1 Score: 311 bits (796), Expect = 2.420e-97 Identity = 154/260 (59.23%), Postives = 193/260 (74.23%), Query Frame = 1
Query: 34 TGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
T P PVQSF G DD +L + G E+PTPIQA ALP +SGRD+IG+A TGSGKT +F+WP + H M Q+E+ G +GPI ++LAPTREL QI+ A ++ K +G AV+GG GKWEM +ALK+G EIVVATPGR++E+I+ KATN+RRCTM++LDEADRMFDMGFEYQMRSIV Q RPDRQTL+FSATFKR+V+QLA+ +L DPV + +GG A + I QVVHVLS D KW+W + VA GK+ V
Sbjct: 222 TDAPWPVQSFVQLGLDDRILRAIASAGLESPTPIQATALPTALSGRDVIGIAGTGSGKTFSFLWPMITHAMAQQELAPG-DGPIGLVLAPTRELVEQIHRHAKRYLKPFGGYSVAVFGGEGKWEMARALKQGAEIVVATPGRLMELIRAKATNLRRCTMVVLDEADRMFDMGFEYQMRSIVDQVRPDRQTLLFSATFKRKVEQLATQVLRDPVRIQVGGHGEAA-QHIHQVVHVLSTDRDKWQWLVGKIKNLVAAGKLLV 479
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: K3WM87_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WM87_GLOUD) HSP 1 Score: 303 bits (776), Expect = 3.450e-97 Identity = 149/258 (57.75%), Postives = 192/258 (74.42%), Query Frame = 1
Query: 40 VPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
VP+P++SF H GFD +L+ +++ G EAPT IQAQ+ PV +SGRDM+G+A+TGSGKTLAF P + H+MDQRE+ R EGPI V+LAPTRELA QI+T A +F YG + A+YGG GKWE +A+++G E++VATPGR+IEMI+ K M R T ++LDEADRMF+MGFE Q+RSI+ Q RPDRQTLMFSATF+RR++ LA DILD+PV V IG ANEDI Q+ V+ D KW W N+ VA G+V +
Sbjct: 93 VPSPIRSFVHLGFDRKMLALLMKLGLEAPTAIQAQSFPVALSGRDMVGIAKTGSGKTLAFTLPMVQHVMDQREL-RKDEGPIAVVLAPTRELAHQIFTHAKRFLHLYGAECAAIYGGVGKWEQIQAVRKGAEVIVATPGRLIEMIRKKTVKMNRVTFVVLDEADRMFEMGFEPQLRSIMGQIRPDRQTLMFSATFRRRIEALAFDILDNPVKVMIGKIG-QANEDIHQIAVVVPNDNAKWPWLMSNLKGIVADGRVLI 348
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: D0NN87_PHYIT (DEAD/DEAH box RNA helicase, putative n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0NN87_PHYIT) HSP 1 Score: 299 bits (766), Expect = 2.200e-96 Identity = 148/258 (57.36%), Postives = 189/258 (73.26%), Query Frame = 1
Query: 40 VPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGPEIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
VPAPV+SF H G D +L +++ G EAPT IQ QA PV +SGRD+IG+A+TGSGKTLAF P + H+MDQRE+ RG EGPI ++LAPTRELA Q Y +A KF YG A+YGGAGKWE +ALK+G E+VVATPGR+IEMI+ KA M R T ++LDEADRMF+MGFE Q+RS++ Q RPDRQ LMFSATF+RR++ LA D+L +PV + +G ANEDIRQ+ VL G KW W + + V +G++ +
Sbjct: 57 VPAPVRSFMHLGLDRKMLQTLMKLGLEAPTAIQTQAFPVALSGRDLIGIAKTGSGKTLAFTLPMVRHVMDQRELQRG-EGPIALVLAPTRELAHQTYVQAKKFLAVYGASCAAIYGGAGKWEQVQALKKGVEVVVATPGRLIEMIRKKAAPMNRVTFVVLDEADRMFEMGFEPQLRSVMGQVRPDRQILMFSATFRRRIETLALDVLTNPVKLTVGQIG-QANEDIRQIAVVLPGHGAKWPWLMSKIRSLVDEGRLLI 312
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Match: A0A4P9WHU4_9FUNG (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WHU4_9FUNG) HSP 1 Score: 300 bits (767), Expect = 3.830e-96 Identity = 154/259 (59.46%), Postives = 190/259 (73.36%), Query Frame = 1
Query: 40 VPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALPVVMSGRDMIGVAQTGSGKTLAFVWPSLVHLMDQREIVRGKEGPIVVILAPTRELAGQIYTEANKFAKRYGCKVCAVYGGAGKWEMQKALKEGP-EIVVATPGRMIEMIKLKATNMRRCTMMILDEADRMFDMGFEYQMRSIVAQTRPDRQTLMFSATFKRRVQQLASDILDDPVHVHIGGFNLTANEDIRQVVHVLSGDALKWKWFSDNVPAFVAKGKVRV 813
V P SF H GFD+ LL V R G+ PT IQ QA+PV + GRD+IG+A+TGSGKT AFVWP LVH+MDQRE+ RG EGPI +ILAPTRELA QI+ EA KFAK YG KV AVYGGA K + K L+ G EI+VATPGR+I+++K+KATN+RR + ++LDEADRMFD+GFE Q+RSI A RPDRQTL+FSATF++RV++LA D L DPV + +G AN D+ Q VL D+LKW W + + F A G V V
Sbjct: 59 VAKPCISFAHFGFDEKLLGTVSRHGYAEPTGIQRQAVPVALGGRDIIGIAKTGSGKTAAFVWPMLVHIMDQRELERG-EGPIGLILAPTRELANQIHVEARKFAKAYGLKVAAVYGGASKGDQFKDLRAGGIEILVATPGRLIDLVKMKATNLRRVSYLVLDEADRMFDLGFEPQVRSICAAVRPDRQTLLFSATFQKRVERLARDALTDPVRISVGNVG-QANSDVTQTAVVLEDDSLKWSWLAARLAGFAASGSVIV 315 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12247.1738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12247.1738.1 >prot_E-fasciculatus_F_contig12247.1738.1 ID=prot_E-fasciculatus_F_contig12247.1738.1|Name=mRNA_E-fasciculatus_F_contig12247.1738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=271bp VSVEAGKQRNDTGVPAPVQSFKHAGFDDLLLSEVVRQGFEAPTPIQAQALback to top mRNA from alignment at E-fasciculatus_F_contig12247:561..3967+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12247.1738.1 ID=mRNA_E-fasciculatus_F_contig12247.1738.1|Name=mRNA_E-fasciculatus_F_contig12247.1738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3407bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12247:561..3967+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12247:561..3967+ >mRNA_E-fasciculatus_F_contig12247.1738.1 ID=mRNA_E-fasciculatus_F_contig12247.1738.1|Name=mRNA_E-fasciculatus_F_contig12247.1738.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1626bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12247:561..3967+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |