mRNA_E-fasciculatus_F_contig12242.1735.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: D7FH90_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH90_ECTSI) HSP 1 Score: 199 bits (507), Expect = 6.360e-57 Identity = 102/122 (83.61%), Postives = 108/122 (88.52%), Query Frame = 3
Query: 3 VTPGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLKAIQRGCLDGSGGTAEKIEILLLEILPEAGDRPAAKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHALKFDRET 368
+TPGDMSEEDVFEYLLEEVASY+RNDHGG RLGKKHLRKLLKAIQRG LDGS GT +KIE+L+L+ILPEA AA TPKEVIVRSPPVV PAHDGGLPSRAEF AMQAAL ALKFDRET
Sbjct: 625 MTPGDMSEEDVFEYLLEEVASYKRNDHGGVRLGKKHLRKLLKAIQRGSLDGSNGTEQKIEVLVLKILPEADTSLAATLSTPKEVIVRSPPVVTPAHDGGLPSRAEFTAMQAALEALKFDRET 746
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: D7G1L2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1L2_ECTSI) HSP 1 Score: 186 bits (471), Expect = 1.190e-52 Identity = 94/115 (81.74%), Postives = 101/115 (87.83%), Query Frame = 3
Query: 9 PGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLKAIQRGCLDGSGGTAEKIEILLLEILPEAGDRPAAKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHALK 353
PGDMSEEDVF+YLLEEV +YERNDHGGKRLGKKHLRKLLKAIQ GCLDGS GT +KI+ILLLEILPEA D+PAA TPKEV+VRSPP A AHD GLPSRAEFAA+QA L ALK
Sbjct: 385 PGDMSEEDVFKYLLEEVTAYERNDHGGKRLGKKHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALK 499
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: D7FHA3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA3_ECTSI) HSP 1 Score: 181 bits (458), Expect = 4.500e-50 Identity = 92/115 (80.00%), Postives = 100/115 (86.96%), Query Frame = 3
Query: 9 PGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLKAIQRGCLDGSGGTAEKIEILLLEILPEAGDRPAAKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHALK 353
PGDMSEEDVF+YLLEEV + ERNDHGGKRLGK+HLRKLLKAIQ GCLDGS GT +KI+ILLLEILPEA D+PAA TPKEV+VRSPP A AHD GLPSRAEFAA+QA L ALK
Sbjct: 580 PGDMSEEDVFKYLLEEVTADERNDHGGKRLGKRHLRKLLKAIQGGCLDGSNGTVQKIKILLLEILPEADDKPAATPGTPKEVMVRSPPAGAAAHDSGLPSRAEFAAIQAELAALK 694
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: A0A6H5KZF6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZF6_9PHAE) HSP 1 Score: 166 bits (420), Expect = 1.030e-44 Identity = 83/121 (68.60%), Postives = 97/121 (80.17%), Query Frame = 3
Query: 3 VTPGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLKAIQRGCLDGSGGTAEKIEILLLEILPEAGDRPAAKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHALKFDRE 365
++P DM E+DVFEYLLEEVA YER+DHGGKRLGKKHLRKLLKAIQRGCLDGS G +K+E LLLEILP A R + S TPK+VIVRSPP +AP HDG LPS A+ AA+QAA+ L ++
Sbjct: 658 ISPDDMIEDDVFEYLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMEALLLEILPGADIRTSETSSTPKKVIVRSPPALAPTHDGRLPSMADIAALQAAVEVLTLAKD 778
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI) HSP 1 Score: 159 bits (402), Expect = 2.720e-42 Identity = 80/116 (68.97%), Postives = 96/116 (82.76%), Query Frame = 3
Query: 3 VTPGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLKAIQRGCLDGSGGTAEKIEILLLEILPEAGDRPAAKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHAL 350
+ P + E+DVFE+LLEEVA YER+DHGGKRLGKKHLRKLLKAIQRGCLDGS G +K+E+LLLEILPEA R + S +PKEVIV+SPP +AP H+G LPS A+ AA+QAA+ AL
Sbjct: 698 ILPDIIIEDDVFEHLLEEVARYERSDHGGKRLGKKHLRKLLKAIQRGCLDGSSGIKQKMELLLLEILPEADIRTSETSISPKEVIVQSPPALAPTHNGTLPSMADIAALQAAVEAL 813
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: D7FHA2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHA2_ECTSI) HSP 1 Score: 142 bits (357), Expect = 2.350e-36 Identity = 80/127 (62.99%), Postives = 90/127 (70.87%), Query Frame = 3
Query: 9 PGDMSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLKAIQRGCLDGSGGTAEK----------IEILLLEILPEAGDRPAAKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHALKFD 359
P MSE DVFEY+L+EVAS NDHGGKRLGKKHLRKLLKA+QRGCLDG T +K + +LLLEILPEA R AA S KEVIV+S PVV AHD G PS A+FAA+QAA+ LK D
Sbjct: 545 PAIMSEGDVFEYVLKEVASCGHNDHGGKRLGKKHLRKLLKAVQRGCLDGLSCTEQKARTRMSSRQQMAVLLLEILPEADIRHAATSSLLKEVIVKSLPVVGAAHDSGSPSMADFAALQAAVEELKSD 671
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: D7G8A7_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A7_ECTSI) HSP 1 Score: 103 bits (256), Expect = 1.130e-22 Identity = 55/125 (44.00%), Postives = 75/125 (60.00%), Query Frame = 3
Query: 9 PGDMSEEDVFEYLLEEVASYERNDHG--------GKRLGKKHLRKLLKAIQRGCLDGSGGTAEKIEILLLEILPEAGDRPAAKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHALKFD 359
P S+ED E+ EE AS N+ G G+RLGK+H+R +L A++RGCL G+ EK+E LL ++PEAG +P + S + + P AP+HDGGL AEFAAMQA L AL+ +
Sbjct: 474 PDCASDEDFMEWFAEEAASCVPNNTGKSTPEEKTGRRLGKRHIRMILAAVERGCLQGTHAIEEKVEQLLKVVVPEAGAKPVSNSNAQERSFEQHPAAPAPSHDGGLDLHAEFAAMQAKLEALEIE 598
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: A0A6H5JVV5_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVV5_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 2.360e-16 Identity = 41/91 (45.05%), Postives = 58/91 (63.74%), Query Frame = 3
Query: 87 GKRLGKKHLRKLLKAIQRGCLDGSGGTAEKIEILLLEILPEAGDRPAAKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHALKFD 359
G+RL K+H+R +L A++RGCL + EK+E L ++PEAG +P + S + + P AP+HDGGL AEFAAMQA L AL+ +
Sbjct: 510 GRRLAKRHIRMILAAVERGCLQETHAIEEKVERLRRVVVPEAGVKPVSNSNAQERSFEQRPAAPAPSHDGGLDLHAEFAAMQAKLEALEIE 600
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: D7FHJ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHJ4_ECTSI) HSP 1 Score: 78.2 bits (191), Expect = 5.510e-15 Identity = 42/87 (48.28%), Postives = 55/87 (63.22%), Query Frame = 3
Query: 87 GKRLGKKHLRKLLKAIQRGCLDGSGGTAEKIEILLLEILPEAGDRPAAKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHA 347
GKRLG++HLR LL A+ RGCL+G+ EK++ L+ ILPEA P S + +R P V+APAHD GL A+ A + AAL A
Sbjct: 29 GKRLGRRHLRMLLTAVGRGCLEGTNNPREKVDALVQVILPEANIHPTTISSAGEHPRMR-PTVLAPAHDAGLDQAAQLATVMAALEA 114
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Match: A0A6H5JDK8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDK8_9PHAE) HSP 1 Score: 68.6 bits (166), Expect = 1.100e-10 Identity = 35/47 (74.47%), Postives = 38/47 (80.85%), Query Frame = 3
Query: 228 AKSRTPKEVIVRSPPVVAPAHDGGLPSRAEFAAMQAALHALKFDRET 368
A S TPKE+IVRSP VVA AHD GLPSR + AAMQA+ ALKFDRET
Sbjct: 289 ATSNTPKEMIVRSPVVVATAHDNGLPSREQIAAMQASSEALKFDRET 335 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12242.1735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12242.1735.1 >prot_E-fasciculatus_F_contig12242.1735.1 ID=prot_E-fasciculatus_F_contig12242.1735.1|Name=mRNA_E-fasciculatus_F_contig12242.1735.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=136bp MSEEDVFEYLLEEVASYERNDHGGKRLGKKHLRKLLKAIQRGCLDGSGGTback to top mRNA from alignment at E-fasciculatus_F_contig12242:3100..4071- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12242.1735.1 ID=mRNA_E-fasciculatus_F_contig12242.1735.1|Name=mRNA_E-fasciculatus_F_contig12242.1735.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=972bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12242:3100..4071- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12242:3100..4071- >mRNA_E-fasciculatus_F_contig12242.1735.1 ID=mRNA_E-fasciculatus_F_contig12242.1735.1|Name=mRNA_E-fasciculatus_F_contig12242.1735.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12242:3100..4071- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |