mRNA_E-fasciculatus_F_contig12240.1734.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12240.1734.1
Unique NamemRNA_E-fasciculatus_F_contig12240.1734.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5JTC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE)

HSP 1 Score: 424 bits (1090), Expect = 6.500e-145
Identity = 208/241 (86.31%), Postives = 219/241 (90.87%), Query Frame = 1
Query:   22 MFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGKLWRGERTPREEVS 744
            MFYVGRIVWSRVKPQEGPVTF+K LAP  GD      GRKRCWCV LC+GFRDGWRNGHSVFEWADKGAWVSLKDEKVDL+SRKFRIGFEPLFVDFTKEGAVYI FL+FKWFAL VIAGLVTNGTVQTASLAVIYLVD+ALLCMLRPFSNSVVQWVET+LVTADA+TLALMVWAS LDP+   DKRKLD IYAGCML+QTLGI LLTIPIYADTF+VLF QIR+KA KLWRGERTPR E S
Sbjct:    1 MFYVGRIVWSRVKPQEGPVTFDKGLAPAGGDGXXXXXGRKRCWCVLLCKGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLDSRKFRIGFEPLFVDFTKEGAVYIIFLIFKWFALAVIAGLVTNGTVQTASLAVIYLVDVALLCMLRPFSNSVVQWVETLLVTADALTLALMVWASALDPDEDGDKRKLDNIYAGCMLVQTLGIILLTIPIYADTFVVLFSQIRQKASKLWRGERTPRAEKS 241          
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI)

HSP 1 Score: 445 bits (1145), Expect = 4.780e-143
Identity = 220/248 (88.71%), Postives = 229/248 (92.34%), Query Frame = 1
Query:    1 FVFPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGKLWRGERTPREEVS 744
            F+FPIFLMFYVGRIVWSRVKPQEGPVTF K LAP EG        RKRCWCV+LCRGFRDGWRNGHS+FEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYI FLLFKWFALG+IAGLVTNGTVQTASLAVIYLVDIALLC LRPFSNSVVQWVETVLVTADA+TL +MVWASVLDP+M  DKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIV+FFQIR KA KLWRGERTPRE+ S
Sbjct: 1176 FIFPIFLMFYVGRIVWSRVKPQEGPVTFTKGLAPEEG--------RKRCWCVSLCRGFRDGWRNGHSIFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYIIFLLFKWFALGIIAGLVTNGTVQTASLAVIYLVDIALLCKLRPFSNSVVQWVETVLVTADALTLGMMVWASVLDPDMDADKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVIFFQIRHKASKLWRGERTPREQKS 1415          
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI)

HSP 1 Score: 239 bits (610), Expect = 5.830e-69
Identity = 115/238 (48.32%), Postives = 160/238 (67.23%), Query Frame = 1
Query:    4 VFPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGKLWRG 717
            VFP+ +  YV RIVWSRV+P   P+ +E +   G+G           C+    C GF   W +G S+FEWADKG W S  +E VDL+SRKFRIGFEPLFVD+T++G +Y+TFLLF+W + G+IAG VTNGT+QT ++  IY++D  +L  L+PFSNS++Q   T+ V ADAITL LM +A+ L+P+  +D  +L+ +YAG +L+QTL I    IP+Y D FI +   + KK  +L +G
Sbjct:  723 VFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKG-----------CFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALLVQTLAILFFVIPLYLDAFITIVGTLCKKCSQLAKG 949          
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE)

HSP 1 Score: 210 bits (535), Expect = 1.240e-58
Identity = 99/205 (48.29%), Postives = 140/205 (68.29%), Query Frame = 1
Query:    4 VFPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQ 618
            VFP+ +  YV RIVWSRV+P   P+ +E +   G+G           C+    C GF   W +G S+FEWA+KG W S  +E VDL+SRKFRIGFEPLFVD+T++G +Y+TFLLF+W + G+IAG VTNGT+QT ++  IY++D  +L  L+PFSNS++Q   T+ V AD ITL LM +A+ L+P+  +D  +L+ +YAG + +Q
Sbjct: 1046 VFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKG-----------CFLFKACGGFCKAWTSGSSMFEWAEKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWMSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADTITLGLMFYATFLEPDDDDDADRLELVYAGALSVQ 1239          
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.830e-31
Identity = 82/235 (34.89%), Postives = 120/235 (51.06%), Query Frame = 1
Query:    7 FPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLK--DEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGK 705
            +PI +   V R  + RV+P    V   K      GD  D  EG+ R    +     R GW   HS+F WA+KG W + +  +E    E + FRIGFEPLFVDFTK GA ++ F L +W ALG I  L+    +Q +    ++ +   LL + RPF+NSV+  +   LV  DA+ +AL+     +  + +E       + +  ML+Q   +  L IPIY DT ++L   IR +  K
Sbjct: 1079 YPILMFVAVLRTFFVRVRPNTLIVFTPKEADDDTGDAGDAEEGQ-RARSASFLSKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALL----AVSASRWEGTAAAGKVDSVVMLLQLFALCALIIPIYIDTSLILIGAIRSRLQK 1308          
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.160e-24
Identity = 73/236 (30.93%), Postives = 114/236 (48.31%), Query Frame = 1
Query:    4 VFPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGK 705
            ++P+ +   V R +  RV+P    +   K+ A       DG  G        L   F+  W   +S+F WADKG W  V   D +V  E   FRIGFEP+FVD+TK G  +I   L +W A   +  ++ N  VQ      ++ V   +L  L+PF+NSV+  +E  +   DAI++ +   AS L    +E   +   +    +++Q L +F L IP+Y D   ++   IR +  K
Sbjct: 1437 LYPLLMFVTVFRTLLVRVRPNV--LLIFKTYAE------DGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISMGVFA-ASAL---WWEGTNRAAHLNTSVVVLQLLSLFALVIPVYLDAVTIVMGAIRNRIRK 1660          
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 2.980e-22
Identity = 64/238 (26.89%), Postives = 114/238 (47.90%), Query Frame = 1
Query:    4 VFPIFLMFYVGRIVWSRVKPQEGPV--TFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGK 705
            ++P+ +   V R ++ RV+P E  +  T+++    G      GG              F+  W   +S+F WADKG W  V   +  +  E   FRIGFEP+FVD+TK G  +I   L +W ++ ++  ++ N  VQ      +      +L  L+PF+NSV+  +   +V  DA++  L+  A++     +E   +   + +   ++Q + +  L IP+Y D   ++   IR +  K
Sbjct: 1618 LYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNAPNCRGG----------FLSHFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAAL----KWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRNRIRK 1841          
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE)

HSP 1 Score: 105 bits (262), Expect = 4.050e-22
Identity = 65/238 (27.31%), Postives = 114/238 (47.90%), Query Frame = 1
Query:    4 VFPIFLMFYVGRIVWSRVKPQEGPV--TFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGK 705
            ++P+ +   V R ++ RV+P E  +  T+++    G      GG              F+  W   +S+F WADKG W  V   +  +  E   FRIGFEP+FVD+TK G  +I   L +W ++ ++  ++ N  VQ      +      +L  L+PF+NSV+  +   +V  DA+   L+  A++     +E   +   + +   ++Q + +  L IP+Y D   ++   IRK+  K
Sbjct: 1659 LYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNTPNGRGG----------FLSRFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAAL----KWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRKRIRK 1882          
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE)

HSP 1 Score: 101 bits (251), Expect = 1.100e-20
Identity = 58/176 (32.95%), Postives = 93/176 (52.84%), Query Frame = 1
Query:  181 GWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAG 702
            G +   S+F WADKG W  V   DE    ++  FRIGFEPL+ DFT+ G+ +  + L +W  L  IA LV N  VQ      ++ +   LL + +PF+NSV+  +  +++  DA+ + ++     L    +      D I    M+ Q L I +L +P+Y DT ++++  IR + G
Sbjct:  410 GLKKDSSLFAWADKGHWNTVQTADEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFANSVLNTMGAIVMLTDAVCMGML----ALSAGTFRMTAAADRIDIVVMVAQHLCIAVLVVPLYVDTLLLVWGAIRNRRG 581          
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 1.060e-19
Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 1
Query:  181 GWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGKL 708
            G +N  S+F WADKG W  V   ++K   ++  FRIGFEPLF DFT+ G+ +I + L +   L  IA LV N  +Q      ++ +   LL   +PF+NSV+  V  +++  DA+ + ++  A+      +        +    M+IQ L I +L IP+Y DT + ++  IR + G +
Sbjct:  455 GLKNDFSLFSWADKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAA----GTFNGTATAARMDTAVMVIQALCIAVLVIPLYVDTAVSIYGMIRNRKGSV 628          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A6H5JTC8_9PHAE6.500e-14586.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIK9_ECTSI4.780e-14388.71Beta strand repeat-containing protein n=1 Tax=Ecto... [more]
D7G3P1_ECTSI5.830e-6948.32Similar to Mucin-1 (MUC-1) (Polymorphic epithelial... [more]
A0A6H5LAH5_9PHAE1.240e-5848.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN93_ECTSI1.830e-3134.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FWS4_ECTSI1.160e-2430.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLG6_ECTSI2.980e-2226.89Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JD90_9PHAE4.050e-2227.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTJ3_9PHAE1.100e-2032.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J9C2_9PHAE1.060e-1933.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12240contigE-fasciculatus_F_contig12240:712..4078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score434.1
Seed ortholog evalue4.2e-119
Seed eggNOG ortholog2880.D8LIK9
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTRP-like family
Ec32 orthologEc-18_003210.1
Exons6
Model size744
Cds size723
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927732.139004-CDS-E-fasciculatus_F_contig12240:711..7501622927732.139004-CDS-E-fasciculatus_F_contig12240:711..750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 712..750 -
1695995670.4545884-CDS-E-fasciculatus_F_contig12240:711..7501695995670.4545884-CDS-E-fasciculatus_F_contig12240:711..750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 712..750 -
1622927732.1546206-CDS-E-fasciculatus_F_contig12240:1305..13921622927732.1546206-CDS-E-fasciculatus_F_contig12240:1305..1392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 1306..1392 -
1695995670.4662168-CDS-E-fasciculatus_F_contig12240:1305..13921695995670.4662168-CDS-E-fasciculatus_F_contig12240:1305..1392Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 1306..1392 -
1622927732.1673617-CDS-E-fasciculatus_F_contig12240:1823..19401622927732.1673617-CDS-E-fasciculatus_F_contig12240:1823..1940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 1824..1940 -
1695995670.478001-CDS-E-fasciculatus_F_contig12240:1823..19401695995670.478001-CDS-E-fasciculatus_F_contig12240:1823..1940Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 1824..1940 -
1622927732.1856372-CDS-E-fasciculatus_F_contig12240:2547..26721622927732.1856372-CDS-E-fasciculatus_F_contig12240:2547..2672Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 2548..2672 -
1695995670.4864933-CDS-E-fasciculatus_F_contig12240:2547..26721695995670.4864933-CDS-E-fasciculatus_F_contig12240:2547..2672Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 2548..2672 -
1622927732.1981242-CDS-E-fasciculatus_F_contig12240:3163..33721622927732.1981242-CDS-E-fasciculatus_F_contig12240:3163..3372Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 3164..3372 -
1695995670.495969-CDS-E-fasciculatus_F_contig12240:3163..33721695995670.495969-CDS-E-fasciculatus_F_contig12240:3163..3372Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 3164..3372 -
1622927732.211976-CDS-E-fasciculatus_F_contig12240:3911..40571622927732.211976-CDS-E-fasciculatus_F_contig12240:3911..4057Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 3912..4057 -
1695995670.505853-CDS-E-fasciculatus_F_contig12240:3911..40571695995670.505853-CDS-E-fasciculatus_F_contig12240:3911..4057Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12240 3912..4057 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927732.2246935-UTR-E-fasciculatus_F_contig12240:4057..40781622927732.2246935-UTR-E-fasciculatus_F_contig12240:4057..4078Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12240 4058..4078 -
1695995670.5150032-UTR-E-fasciculatus_F_contig12240:4057..40781695995670.5150032-UTR-E-fasciculatus_F_contig12240:4057..4078Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12240 4058..4078 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12240.1734.1prot_E-fasciculatus_F_contig12240.1734.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12240 712..4057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12240.1734.1

>prot_E-fasciculatus_F_contig12240.1734.1 ID=prot_E-fasciculatus_F_contig12240.1734.1|Name=mRNA_E-fasciculatus_F_contig12240.1734.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=241bp
MFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRG
FRDGWRNGHSVFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEG
AVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSN
SVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQT
LGIFLLTIPIYADTFIVLFFQIRKKAGKLWRGERTPREEVS
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mRNA from alignment at E-fasciculatus_F_contig12240:712..4078-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12240.1734.1 ID=mRNA_E-fasciculatus_F_contig12240.1734.1|Name=mRNA_E-fasciculatus_F_contig12240.1734.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3367bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12240:712..4078- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGTTTTCCCCATCTTTCTCATGTTCTACGTCGGGCGGATCGTGTGGAG CCGAGTCAAGCCCCAGGAGGGGCCGGTGACCTTTGAGAAGAGCCTCGCGC CGGGGGAGGGCGACGAGGCGGACGGCGGCGAGGGTCGAAAGAGGTGCTGG TGCGTCAACCTGTGCAGGTGAGAGGGTATGGCTGCTGCTGCTGCTGCTGC TGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGCTGCTGTGGTGGCAAAAGT AGCCGTTAGCATAGCCCCGCTGATATCCCCTACATTATGCAGCGACAGCT GACACCATCACCGACAGAGTAGTGTTAACAGCCCACATTTCACTGCTGTA GCACTGCTGATAGGTTTAACAGCTACACAGCATCACACCCAACAGCAGAA TGTATCTCGACAACGACCCACACACAGCAACTGGAGAAGCACAATAGCAA CTGCCACAGCGACAGCAACGCTGACGGCCCTAACTCCAAACAAGACAAAA AAATCGCGGTAGCAACGACGGCAACGCTGGCGCCATCCAATCAACAACTT GAGTGTAACAGTACCCATGTGGCAGCAACCCAACTCCCAAACAACAATTT GCGTGTAGCCATGCACAGACGACAGACCGCTTAACGGTACTAACCTTGAC AACAACGACTACAACAACAACATTAACAACAACAACAACAACAACAACAA CAACAGGGGGTTCCGCGACGGTTGGAGGAACGGGCATTCGGTGTTCGAGT GGGCAGACAAGGGGGCCTGGGTCAGCCTCAAGGACGAGAAGGTGGACCTG GAGAGCCGGAAGTTCCGCATCGGCTTCGAGCCGCTGTTCGTGGACTTCAC CAAGGAGGGGGCGGTGTACATCACCTTCCTGCTCTTCAAGTGGTTCGCCC TCGGGGTCATCGCAGGTAGGTTCGTCGAACGAATGATGAACGAATGAATT GTTTGCCAACAATATCGTCTGCTGCTGCTGCTGTTGGTGCTGCCTGGCGT GCTTTTCGTGTTGTTGTGGGTGACGATGTGATGATGGCGGTGTGCGGTAT GCGCATGTGTTTTTTATATTTGTTGGTTGAGGTGATGCGAATACACTTTT GTCTGGATTGTTGGTGGTGATGCTCTGCCGCGATTGGTCGTTCCGTGCTT GGCGATATGTTTCGAGTCTGTGGTCGGTTGTTGTTGTTGTTGTTGTTGCC TGTGTCTTTTTTTTGCACTTTGCGTTCTCTCTCTTCCCCCTTGTCTCCTC TCGTTTGTTGTCGTCGGTCTTTTTATGAAGTAGTGGTCTCGCCCTCGAGA CAGTTACGAGATGTTCCACAGAGACGTACTTGTATAATTAATTAATTAAT CCGCTACTGCTATGTATGTTTGCTGTATTTGATTGTGCCGCACGTCTCGT CTGCAGGGCTGGTGACGAACGGTACGGTGCAGACGGCTTCGCTGGCCGTC ATCTACCTGGTCGACATCGCCCTCCTGTGTATGCTGCGCCCCTTCTCCAA CTCCGTGGTGCAGTGGGTGGAGACCGTGCTGGTGAGACTTGTATATAGTG TGGTATGGGGCGGCACACACACGCGATATCGATTGCGTTTGTTTCATCTA CAGGTGGTATACGATACGTAGTTGGAGCGAGATTCTTCTTCTCTTTTTTT GTCATTTTTGGAAATATTGGAGCGAGGCTCTTCCTTTTTTTTGTCAGTTT TGGGAATTTTTGGAACGAGATTCTTCCTTTTGTGTCATTTTTGAAAATAT TGGAGCGAAGTTCTTCCTTTTTTTTTTCGTCACTTGTGCAAATTTTGGAG CGAGATTCTTGCCTTTTTTTCATTTTTGGCGTTTGGCGGGATCTGAAACC TCGTGCTCTCCCAACAAATTCAGACGCCTCTTTTTATCGACGCCAATGTG AGAAGAGGGGGTCATATTTGACAGACGTTGGGGAGATTTGCCTTCTACCC ATTCGGAACGGGGTCTCCATTATATTTTCAAATGAAAAAACCTTTCCTAT CTCTGCTCATTTAATTTTACCTTGACCATCGTCATGTTCTATTAATCCGA CTTTTTTTGAGATGTCGCTCAACCGTAGCCGCTCTGCTGTTGTATTATGC TTGTTTTTGCGAATTTTGTCCCTCGGGTGGCATGACAGGTGACCGCCGAT GCGATAACCCTAGCGCTCATGGTGTGGGCATCCGTTCTCGATCCGAACAT GTATGAGGACAAGAGGAAGCTCGACGGCATCTACGCTGGCTGCATGCTCA TACAGGTTTTGTTCTCTTGTGTGGCTGTTTGTGGTATTTCCGCGAGTACC ATGTCGTCTTGTCTGGTCGATGTTGTTGGCGTTGCGGGTTATTTGTTATT TGCGACTTCTTGAACCGACGTCCCGTGTCCGGTTACGAGCCACCGGGGCG ATAGCAGCTCGGAAGAAAAGAGAGACAAAAAGTGTGTGGAGCTGTGTCGA CGAGATTGTTCTCGATACTTACTCGCTCCTTATTTCTTTTTTTTTCAGCC CGCTATGTACACTAACCATTGACAACGACGATAACATAAATAGCAGCAGT ATCAACACCAGTAGCGGCAACAACCACAAGAACAGCTGTAACACCAAAAC CATAACACTATCGTCGCCATGTGTTTTGTTCGTCCCTTTTCTGCTGCTGC TGCTGCTGCTGCTGCTGCTGCTGCTGCTCACAACAGACACTGGGGATCTT CTTGCTGACCATCCCCATTTACGCAGACACGTTCATCGTCCTCTTCTTCC AGATCCGCAAGAAGGCCGGCAAGGTACGTGCAGATCTACGGAGTCTACGA AATACGAAATCTACGATATCTACGCAACGAGTACTTGTAAAACGTCAGCG TTGTTTCACGGGGACTTCGGTGATTTATGAAAGTCACGCGCTTGGCCACC TTCACTTGGCCTCTGTGCTTGGGTGTAACCTGTGACCACACGAAAGGCGC CCGCGTGAGTTGGACCGGACCGGTTTGGGCGGAAGAAGGTACCGAGCAGA GATTGGGACGGATGTGAAGTCAAGACACAAATTACAGGTCGTCATGGACG TGTTCTTTTTATCGAGTGATATGTCCCGACTTAGTTTCAAGACTTCATTT TGTTGTTGAAATTTAATATACGGCATGCTTCGTATGAAAAATGAACAATG AAAAATGCCGCAATCACCGATGTTTCTTTGGTTTTCGAAACCACCCAAAC AAGATTGGGAAAGGCACTTAAACGAACTTGGAATAATCGCGTCTTTATCC CGGCAATTTGCTCTAAACTTACATTTTTGCCCCCCTTTCTTTTGTCAAAT CTGTCCTCGCTCTTGTCTGTCGGAACAGCTCTGGCGCGGGGAACGTACGC CAAGAGAAGAGGTGAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12240:712..4078-

>mRNA_E-fasciculatus_F_contig12240.1734.1 ID=mRNA_E-fasciculatus_F_contig12240.1734.1|Name=mRNA_E-fasciculatus_F_contig12240.1734.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1446bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12240:712..4078- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGTTCTACGTCGGGCGGATCGTGTGGAGCCGAGTCAAGCCCCAGGAGGG
GCCGGTGACCTTTGAGAAGAGCCTCGCGCCGGGGGAGGGCGACGAGGCGG
ACGGCGGCGAGGGTCGAAAGAGGTGCTGGTGCGTCAACCTGTGCAGATGT
TCTACGTCGGGCGGATCGTGTGGAGCCGAGTCAAGCCCCAGGAGGGGCCG
GTGACCTTTGAGAAGAGCCTCGCGCCGGGGGAGGGCGACGAGGCGGACGG
CGGCGAGGGTCGAAAGAGGTGCTGGTGCGTCAACCTGTGCAGGGGGTTCC
GCGACGGTTGGAGGAACGGGCATTCGGTGTTCGAGTGGGCAGACAAGGGG
GCCTGGGTCAGCCTCAAGGACGAGAAGGTGGACCTGGAGAGCCGGAAGTT
CCGCATCGGCTTCGAGCCGCTGTTCGTGGACTTCACCAAGGAGGGGGCGG
TGTACATCACCTTCCTGCTCTTCAAGTGGTTCGCCCTCGGGGTCATCGCA
GGGGGTTCCGCGACGGTTGGAGGAACGGGCATTCGGTGTTCGAGTGGGCA
GACAAGGGGGCCTGGGTCAGCCTCAAGGACGAGAAGGTGGACCTGGAGAG
CCGGAAGTTCCGCATCGGCTTCGAGCCGCTGTTCGTGGACTTCACCAAGG
AGGGGGCGGTGTACATCACCTTCCTGCTCTTCAAGTGGTTCGCCCTCGGG
GTCATCGCAGGGCTGGTGACGAACGGTACGGTGCAGACGGCTTCGCTGGC
CGTCATCTACCTGGTCGACATCGCCCTCCTGTGTATGCTGCGCCCCTTCT
CCAACTCCGTGGTGCAGTGGGTGGAGACCGTGCTGGGCTGGTGACGAACG
GTACGGTGCAGACGGCTTCGCTGGCCGTCATCTACCTGGTCGACATCGCC
CTCCTGTGTATGCTGCGCCCCTTCTCCAACTCCGTGGTGCAGTGGGTGGA
GACCGTGCTGGTGACCGCCGATGCGATAACCCTAGCGCTCATGGTGTGGG
CATCCGTTCTCGATCCGAACATGTATGAGGACAAGAGGAAGCTCGACGGC
ATCTACGCTGGCTGCATGCTCATACAGGTGACCGCCGATGCGATAACCCT
AGCGCTCATGGTGTGGGCATCCGTTCTCGATCCGAACATGTATGAGGACA
AGAGGAAGCTCGACGGCATCTACGCTGGCTGCATGCTCATACAGACACTG
GGGATCTTCTTGCTGACCATCCCCATTTACGCAGACACGTTCATCGTCCT
CTTCTTCCAGATCCGCAAGAAGGCCGGCAAGACACTGGGGATCTTCTTGC
TGACCATCCCCATTTACGCAGACACGTTCATCGTCCTCTTCTTCCAGATC
CGCAAGAAGGCCGGCAAGCTCTGGCGCGGGGAACGTACGCCAAGAGAAGA
GGTGAGTCTCTGGCGCGGGGAACGTACGCCAAGAGAAGAGGTGAGT
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