mRNA_E-fasciculatus_F_contig12240.1734.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5JTC8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC8_9PHAE) HSP 1 Score: 424 bits (1090), Expect = 6.500e-145 Identity = 208/241 (86.31%), Postives = 219/241 (90.87%), Query Frame = 1
Query: 22 MFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGKLWRGERTPREEVS 744
MFYVGRIVWSRVKPQEGPVTF+K LAP GD GRKRCWCV LC+GFRDGWRNGHSVFEWADKGAWVSLKDEKVDL+SRKFRIGFEPLFVDFTKEGAVYI FL+FKWFAL VIAGLVTNGTVQTASLAVIYLVD+ALLCMLRPFSNSVVQWVET+LVTADA+TLALMVWAS LDP+ DKRKLD IYAGCML+QTLGI LLTIPIYADTF+VLF QIR+KA KLWRGERTPR E S
Sbjct: 1 MFYVGRIVWSRVKPQEGPVTFDKGLAPAGGDGXXXXXGRKRCWCVLLCKGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLDSRKFRIGFEPLFVDFTKEGAVYIIFLIFKWFALAVIAGLVTNGTVQTASLAVIYLVDVALLCMLRPFSNSVVQWVETLLVTADALTLALMVWASALDPDEDGDKRKLDNIYAGCMLVQTLGIILLTIPIYADTFVVLFSQIRQKASKLWRGERTPRAEKS 241
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D8LIK9_ECTSI (Beta strand repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK9_ECTSI) HSP 1 Score: 445 bits (1145), Expect = 4.780e-143 Identity = 220/248 (88.71%), Postives = 229/248 (92.34%), Query Frame = 1
Query: 1 FVFPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGKLWRGERTPREEVS 744
F+FPIFLMFYVGRIVWSRVKPQEGPVTF K LAP EG RKRCWCV+LCRGFRDGWRNGHS+FEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYI FLLFKWFALG+IAGLVTNGTVQTASLAVIYLVDIALLC LRPFSNSVVQWVETVLVTADA+TL +MVWASVLDP+M DKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIV+FFQIR KA KLWRGERTPRE+ S
Sbjct: 1176 FIFPIFLMFYVGRIVWSRVKPQEGPVTFTKGLAPEEG--------RKRCWCVSLCRGFRDGWRNGHSIFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYIIFLLFKWFALGIIAGLVTNGTVQTASLAVIYLVDIALLCKLRPFSNSVVQWVETVLVTADALTLGMMVWASVLDPDMDADKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVIFFQIRHKASKLWRGERTPREQKS 1415
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D7G3P1_ECTSI (Similar to Mucin-1 (MUC-1) (Polymorphic epithelial mucin) (PEM) (PEMT) (Episialin) (Tumor-associated mucin) (Carcinoma-associated mucin) (Tumor-associated epithelial membrane antigen) (EMA) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P1_ECTSI) HSP 1 Score: 239 bits (610), Expect = 5.830e-69 Identity = 115/238 (48.32%), Postives = 160/238 (67.23%), Query Frame = 1
Query: 4 VFPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGKLWRG 717
VFP+ + YV RIVWSRV+P P+ +E + G+G C+ C GF W +G S+FEWADKG W S +E VDL+SRKFRIGFEPLFVD+T++G +Y+TFLLF+W + G+IAG VTNGT+QT ++ IY++D +L L+PFSNS++Q T+ V ADAITL LM +A+ L+P+ +D +L+ +YAG +L+QTL I IP+Y D FI + + KK +L +G
Sbjct: 723 VFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKG-----------CFLFKACGGFCKAWTSGSSMFEWADKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWLSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADAITLGLMFYATFLEPDDDDDADRLELVYAGALLVQTLAILFFVIPLYLDAFITIVGTLCKKCSQLAKG 949
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5LAH5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAH5_9PHAE) HSP 1 Score: 210 bits (535), Expect = 1.240e-58 Identity = 99/205 (48.29%), Postives = 140/205 (68.29%), Query Frame = 1
Query: 4 VFPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQ 618
VFP+ + YV RIVWSRV+P P+ +E + G+G C+ C GF W +G S+FEWA+KG W S +E VDL+SRKFRIGFEPLFVD+T++G +Y+TFLLF+W + G+IAG VTNGT+QT ++ IY++D +L L+PFSNS++Q T+ V AD ITL LM +A+ L+P+ +D +L+ +YAG + +Q
Sbjct: 1046 VFPVLMFIYVSRIVWSRVRPDNSPLRYEPNPNAGKG-----------CFLFKACGGFCKAWTSGSSMFEWAEKGQWASKNNEDVDLDSRKFRIGFEPLFVDYTQKGTLYVTFLLFEWMSFGLIAGFVTNGTIQTGAVCFIYVLDFLILVCLKPFSNSIIQCFTTMTVLADTITLGLMFYATFLEPDDDDDADRLELVYAGALSVQ 1239
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D8LN93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN93_ECTSI) HSP 1 Score: 132 bits (332), Expect = 1.830e-31 Identity = 82/235 (34.89%), Postives = 120/235 (51.06%), Query Frame = 1
Query: 7 FPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAWVSLK--DEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGK 705
+PI + V R + RV+P V K GD D EG+ R + R GW HS+F WA+KG W + + +E E + FRIGFEPLFVDFTK GA ++ F L +W ALG I L+ +Q + ++ + LL + RPF+NSV+ + LV DA+ +AL+ + + +E + + ML+Q + L IPIY DT ++L IR + K
Sbjct: 1079 YPILMFVAVLRTFFVRVRPNTLIVFTPKEADDDTGDAGDAEEGQ-RARSASFLSKVRAGWEEDHSLFAWANKGTWETAETDNEGTRREGQWFRIGFEPLFVDFTKSGAWFVAFTLVEWAALGCIGALIDESVLQLSLFCALHTLSFLLLVVFRPFANSVINAMGAGLVGIDAVCMALL----AVSASRWEGTAAAGKVDSVVMLLQLFALCALIIPIYIDTSLILIGAIRSRLQK 1308
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D7FWS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS4_ECTSI) HSP 1 Score: 112 bits (281), Expect = 1.160e-24 Identity = 73/236 (30.93%), Postives = 114/236 (48.31%), Query Frame = 1
Query: 4 VFPIFLMFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGK 705
++P+ + V R + RV+P + K+ A DG G L F+ W +S+F WADKG W V D +V E FRIGFEP+FVD+TK G +I L +W A + ++ N VQ ++ V +L L+PF+NSV+ +E + DAI++ + AS L +E + + +++Q L +F L IP+Y D ++ IR + K
Sbjct: 1437 LYPLLMFVTVFRTLLVRVRPNV--LLIFKTYAE------DGTNGDAPSRAGGLLSRFKSSWAENYSLFSWADKGQWETVQTPDRQVSREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWAAFAFVGVMIENSVVQLVLFCGLHSVMFFILMFLKPFANSVINNIEACVTAIDAISMGVFA-ASAL---WWEGTNRAAHLNTSVVVLQLLSLFALVIPVYLDAVTIVMGAIRNRIRK 1660
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: D8LLG6_ECTSI (Mucin-1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG6_ECTSI) HSP 1 Score: 105 bits (263), Expect = 2.980e-22 Identity = 64/238 (26.89%), Postives = 114/238 (47.90%), Query Frame = 1
Query: 4 VFPIFLMFYVGRIVWSRVKPQEGPV--TFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGK 705
++P+ + V R ++ RV+P E + T+++ G GG F+ W +S+F WADKG W V + + E FRIGFEP+FVD+TK G +I L +W ++ ++ ++ N VQ + +L L+PF+NSV+ + +V DA++ L+ A++ +E + + + ++Q + + L IP+Y D ++ IR + K
Sbjct: 1618 LYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNAPNCRGG----------FLSHFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSNVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVSTGLLAVAAL----KWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRNRIRK 1841
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5JD90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD90_9PHAE) HSP 1 Score: 105 bits (262), Expect = 4.050e-22 Identity = 65/238 (27.31%), Postives = 114/238 (47.90%), Query Frame = 1
Query: 4 VFPIFLMFYVGRIVWSRVKPQEGPV--TFEKSLAPGEGDEADGGEGRKRCWCVNLCRGFRDGWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGK 705
++P+ + V R ++ RV+P E + T+++ G GG F+ W +S+F WADKG W V + + E FRIGFEP+FVD+TK G +I L +W ++ ++ ++ N VQ + +L L+PF+NSV+ + +V DA+ L+ A++ +E + + + ++Q + + L IP+Y D ++ IRK+ K
Sbjct: 1659 LYPLLMFATVVRTLFVRVRPDELLIFKTYDEDGTNGNTPNGRGG----------FLSRFKSSWAENYSLFSWADKGQWETVQTPNRNITREGDWFRIGFEPVFVDYTKRGTWFIVISLVEWASIALVGVMIDNSYVQLLLFCGLQSAMFLILVCLKPFANSVINGIGACIVAIDAVCTGLLAVAAL----KWEGTSRATDVNSAVGVLQIVSLCALVIPVYLDAVTIVMGAIRKRIRK 1882
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5JTJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTJ3_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.100e-20 Identity = 58/176 (32.95%), Postives = 93/176 (52.84%), Query Frame = 1
Query: 181 GWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAG 702
G + S+F WADKG W V DE ++ FRIGFEPL+ DFT+ G+ + + L +W L IA LV N VQ ++ + LL + +PF+NSV+ + +++ DA+ + ++ L + D I M+ Q L I +L +P+Y DT ++++ IR + G
Sbjct: 410 GLKKDSSLFAWADKGHWNTVQTADEDARRDADWFRIGFEPLYADFTQAGSWFTVYTLIEWATLACIAVLVDNSAVQCGLFCALHSMTFILLVVCKPFANSVLNTMGAIVMLTDAVCMGML----ALSAGTFRMTAAADRIDIVVMVAQHLCIAVLVVPLYVDTLLLVWGAIRNRRG 581
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Match: A0A6H5J9C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9C2_9PHAE) HSP 1 Score: 98.2 bits (243), Expect = 1.060e-19 Identity = 59/178 (33.15%), Postives = 95/178 (53.37%), Query Frame = 1
Query: 181 GWRNGHSVFEWADKGAW--VSLKDEKVDLESRKFRIGFEPLFVDFTKEGAVYITFLLFKWFALGVIAGLVTNGTVQTASLAVIYLVDIALLCMLRPFSNSVVQWVETVLVTADAITLALMVWASVLDPNMYEDKRKLDGIYAGCMLIQTLGIFLLTIPIYADTFIVLFFQIRKKAGKL 708
G +N S+F WADKG W V ++K ++ FRIGFEPLF DFT+ G+ +I + L + L IA LV N +Q ++ + LL +PF+NSV+ V +++ DA+ + ++ A+ + + M+IQ L I +L IP+Y DT + ++ IR + G +
Sbjct: 455 GLKNDFSLFSWADKGQWETVQTANDKARRKADWFRIGFEPLFADFTQAGSWFIIYTLIECAVLASIAVLVDNSAMQFLLFCAMHSLTFVLLVGWKPFANSVLNAVAAMVMLTDAVCMGMLALAA----GTFNGTATAARMDTAVMVIQALCIAVLVIPLYVDTAVSIYGMIRNRKGSV 628 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12240.1734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 23
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12240.1734.1 >prot_E-fasciculatus_F_contig12240.1734.1 ID=prot_E-fasciculatus_F_contig12240.1734.1|Name=mRNA_E-fasciculatus_F_contig12240.1734.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=241bp MFYVGRIVWSRVKPQEGPVTFEKSLAPGEGDEADGGEGRKRCWCVNLCRGback to top mRNA from alignment at E-fasciculatus_F_contig12240:712..4078- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12240.1734.1 ID=mRNA_E-fasciculatus_F_contig12240.1734.1|Name=mRNA_E-fasciculatus_F_contig12240.1734.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3367bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12240:712..4078- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12240:712..4078- >mRNA_E-fasciculatus_F_contig12240.1734.1 ID=mRNA_E-fasciculatus_F_contig12240.1734.1|Name=mRNA_E-fasciculatus_F_contig12240.1734.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1446bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12240:712..4078- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |