mRNA_E-fasciculatus_F_contig1224.1733.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1224.1733.1
Unique NamemRNA_E-fasciculatus_F_contig1224.1733.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: A0A6H5K275_9PHAE (Thioredoxin domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K275_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 1.850e-82
Identity = 178/204 (87.25%), Postives = 181/204 (88.73%), Query Frame = 1 
Query:    1 MKSAFAMIGALCCGASSAGAFVLPVGRPSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---NVQQAIDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSRSHPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKFAAVVSSKKGSGQAAVEFVAE 603
            MKSAFAMIGALCCGASSAGAF+LPVGRPS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX              NVQ AIDSNDDYVSAMAQH+DKLVVIKFYDQFCRACDEIRPRYEDLSRS PEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEK AAV+SSKK S Q AVE VAE
Sbjct:    1 MKSAFAMIGALCCGASSAGAFILPVGRPSGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARPTAAQEPERRPNVQ-AIDSNDDYVSAMAQHEDKLVVIKFYDQFCRACDEIRPRYEDLSRSQPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKIAAVISSKKSSRQDAVEAVAE 203
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: A0A835YVS6_9STRA (Thioredoxin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVS6_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.110e-22
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:  256 YVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSRSHPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKFAAVVSSKKGSGQAA 585
            ++ AMA + DK VV+KFYD FCRAC  + P++E +++ +P     F+ VEF   K LCK LGI  LPT+QIY G+ G++AD+P GP RF  V E   A V ++  +G  A
Sbjct:   30 FLEAMAANGDKPVVLKFYDTFCRACKAVAPKFERMAQENPG--VAFYQVEFRQDKPLCKSLGITMLPTIQIYQGSAGKIADMPVGPKRF-HVAEATLAEVLNQNSNGHGA 136
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: A0A7S4A7N2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7N2_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.070e-18
Identity = 49/104 (47.12%), Postives = 68/104 (65.38%), Query Frame = 1 
Query:  235 AIDSNDDYVSAMAQHQ-DKLVVIKFYDQFCRACDEIRPRYEDLSRSHPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKF 543
            AI   D +++AM++   DK+V IKFY  +CRAC  I PR+E L++   EE A F+++EFS  KDLC++L I +LP VQ + G  G VA +  GPS+F DV  K 
Sbjct:  114 AIVDEDTFLAAMSKSAGDKVVAIKFYAGWCRACKTIAPRFERLAKEFGEE-AAFYEIEFSANKDLCRRLDIKKLPCVQFFRGAEGHVATVMCGPSKFPDVRLKL 216
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: F0YB20_AURAN (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YB20_AURAN)

HSP 1 Score: 80.5 bits (197), Expect = 6.000e-15
Identity = 38/95 (40.00%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:  238 IDSNDDYVSAMAQ-HQDKLVVIKFYDQFCRACDEIRPRYEDLSRSHPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSR 519
            ID ++ +++AM     D+LV +KFY  +CRAC  I PR+E L++    ++  FF++EF+  K+LC++L I +LP VQ + G+ G V  +  GPS+
Sbjct:    4 IDGDEAFLAAMQYCTDDRLVAVKFYASWCRACKSIAPRFERLAKEFAGDEVQFFEIEFAANKELCRRLNIKKLPCVQYFRGSLGCVDTVMCGPSK 98
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: K0SW29_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SW29_THAOC)

HSP 1 Score: 82.4 bits (202), Expect = 4.770e-13
Identity = 41/121 (33.88%), Postives = 68/121 (56.20%), Query Frame = 1 
Query:  238 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSRS--HPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKFAAVVSSKKGSGQAAVEF 594
            I + + + + +  + DK++VIKF+  +CRAC  + P+Y  +SR   +     +F  +     K   K LGIM LP+VQIY G+ G V + P GPS+   ++ K   V++SK   GQ +++ 
Sbjct:   93 IQTPEQHTAWLDANSDKIMVIKFFAPWCRACKSVEPKYVQISRDPKYANIPIIFGQLSVQNNKSYVKSLGIMALPSVQIYAGSEGLVENFPCGPSKIPLLKRKLTEVINSKVDPGQLSLKI 213
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: A0A7S3VCG8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VCG8_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.080e-12
Identity = 37/111 (33.33%), Postives = 69/111 (62.16%), Query Frame = 1 
Query:  238 IDSNDDYVSAMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSRS--HPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKFAAVVSSK 564
            ++S +++ + + Q+QDK++++KFY  +CRAC  + P++  +S+   + +   VF  +  + AK+  K LG++ LP+V IY G  G +   P GPS+   +++K A VV+ K
Sbjct:  119 LESKEEHQALLEQNQDKIILLKFYAPWCRACKGLEPKFIQISKDKKYAKLPLVFAQLSVANAKEYVKALGVLALPSVHIYGGEEGLLESFPCGPSKVPILKKKIAQVVNMK 229
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: A0A7S3ATR9_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3ATR9_9EUKA)

HSP 1 Score: 72.8 bits (177), Expect = 2.690e-11
Identity = 37/104 (35.58%), Postives = 60/104 (57.69%), Query Frame = 1 
Query:  238 IDSNDDYVSAM--AQHQDKLVVIKFYDQFCRACDEIRPRYEDLSRSHPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKF 543
            ID  D Y + +  A  ++++VVIKF+  +CRAC  + P++  ++   P  D  F ++ F   K LCK LGI  LP ++I  G+ G+V     GPS+ + ++EK 
Sbjct:   58 IDDTDAYEALIEEATRENRVVVIKFFASWCRACKAMSPKFTRIADDWP--DVEFHEIMFDNNKKLCKSLGIKILPYIEIIGGSGGKVEGFTCGPSKISRLQEKL 159
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: A0A7S2UII6_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UII6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 3.560e-11
Identity = 39/105 (37.14%), Postives = 57/105 (54.29%), Query Frame = 1 
Query:  283 DKLVVIKFYDQFCRACDEIRPRYEDLSRSHPEE----DAV-------FFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKFAAVVSSK 564
            D+L V+KF+  +C++C +   RY+ L+    ++     AV       F +VEF+   DLCK LG+ +LP + IY G+ GRVAD   GP  F  V EK    +  K
Sbjct:    3 DRLCVVKFHASWCKSCQKFGIRYKKLALQEGDKIDRRGAVLEKGRVRFAEVEFTANADLCKTLGVHKLPYIHIYSGSKGRVADFACGPKNFPLVIEKMNKFLDKK 107
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: B8CB63_THAPS (Thioredoxin domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB63_THAPS)

HSP 1 Score: 68.2 bits (165), Expect = 1.000e-10
Identity = 34/82 (41.46%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:  283 DKLVVIKFYDQFCRACDEIRPRYEDLSRS--HPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRF 522
            DKL+VIKFY  +CRAC  + P+Y  +S+   +     VF  +     K   K LGI+ LP++QIY G+ G V + P GPS+ 
Sbjct:    1 DKLMVIKFYAPWCRACKAVEPKYVQISKDPQYSSIPIVFGQLSVQHNKAYVKSLGILALPSMQIYAGSEGLVENFPCGPSKI 82
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Match: A0A7S3WN14_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3WN14_EMIHU)

HSP 1 Score: 69.7 bits (169), Expect = 4.810e-10
Identity = 35/93 (37.63%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:  265 AMAQHQDKLVVIKFYDQFCRACDEIRPRYEDLSRSHPEEDAVFFDVEFSGAKDLCKQLGIMRLPTVQIYDGTNGRVADLPAGPSRFTDVEEKF 543
            A A+ + ++V IKFY  +CRAC  + P+Y+ ++   PE +  F +V F   K LCK LGI  LP +++  G+ G+V     GPS+ + + EK 
Sbjct:   96 AQAESESRVVCIKFYASWCRACKAMAPKYKRVADDWPEIE--FCEVLFDTNKALCKGLGIKVLPYIEVVAGSAGKVEGFSCGPSKISSLMEKL 186
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1224.1733.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K275_9PHAE1.850e-8287.25Thioredoxin domain-containing protein n=2 Tax=Ecto... [more]
A0A835YVS6_9STRA1.110e-2246.36Thioredoxin-like protein n=1 Tax=Tribonema minus T... [more]
A0A7S4A7N2_9STRA2.070e-1847.12Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
F0YB20_AURAN6.000e-1540.00Thioredoxin domain-containing protein (Fragment) n... [more]
K0SW29_THAOC4.770e-1333.88Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3VCG8_9STRA1.080e-1233.33Hypothetical protein (Fragment) n=1 Tax=Chaetocero... [more]
A0A7S3ATR9_9EUKA2.690e-1135.58Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2UII6_9STRA3.560e-1137.14Hypothetical protein n=1 Tax=Attheya septentrional... [more]
B8CB63_THAPS1.000e-1041.46Thioredoxin domain-containing protein (Fragment) n... [more]
A0A7S3WN14_EMIHU4.810e-1037.63Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1224contigE-fasciculatus_F_contig1224:10766..14733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score275.0
Seed ortholog evalue2.8e-71
Seed eggNOG ortholog2880.D8LIL6
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0008152,GO:0009507,GO:0009526,GO:0009532,GO:0009536,GO:0009570,GO:0009593,GO:0009941,GO:0010109,GO:0016020,GO:0016491,GO:0016667,GO:0016671,GO:0019222,GO:0031090,GO:0031323,GO:0031967,GO:0031969,GO:0031975,GO:0042170,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051606,GO:0051775,GO:0051776,GO:0055114,GO:0065007
EggNOG free text desc.cell redox homeostasis
EggNOG OGsCOG0526@1,KOG0907@2759
COG Functional cat.CO
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionthioredoxin-like protein
Ec32 orthologEc-11_004310.1
Exons4
Model size1390
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1224.1733.1prot_E-fasciculatus_F_contig1224.1733.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1224 11550..14733 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927732.0416145-UTR-E-fasciculatus_F_contig1224:10765..115491622927732.0416145-UTR-E-fasciculatus_F_contig1224:10765..11549Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1224 10766..11549 -
1695995670.3976998-UTR-E-fasciculatus_F_contig1224:10765..115491695995670.3976998-UTR-E-fasciculatus_F_contig1224:10765..11549Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1224 10766..11549 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927732.0573196-CDS-E-fasciculatus_F_contig1224:11549..116671622927732.0573196-CDS-E-fasciculatus_F_contig1224:11549..11667Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1224 11550..11667 -
1695995670.4105902-CDS-E-fasciculatus_F_contig1224:11549..116671695995670.4105902-CDS-E-fasciculatus_F_contig1224:11549..11667Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1224 11550..11667 -
1622927732.0712717-CDS-E-fasciculatus_F_contig1224:12095..121781622927732.0712717-CDS-E-fasciculatus_F_contig1224:12095..12178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1224 12096..12178 -
1695995670.4197004-CDS-E-fasciculatus_F_contig1224:12095..121781695995670.4197004-CDS-E-fasciculatus_F_contig1224:12095..12178Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1224 12096..12178 -
1622927732.0845559-CDS-E-fasciculatus_F_contig1224:12536..127101622927732.0845559-CDS-E-fasciculatus_F_contig1224:12536..12710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1224 12537..12710 -
1695995670.4293532-CDS-E-fasciculatus_F_contig1224:12536..127101695995670.4293532-CDS-E-fasciculatus_F_contig1224:12536..12710Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1224 12537..12710 -
1622927732.0981448-CDS-E-fasciculatus_F_contig1224:14502..147331622927732.0981448-CDS-E-fasciculatus_F_contig1224:14502..14733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1224 14503..14733 -
1695995670.4420679-CDS-E-fasciculatus_F_contig1224:14502..147331695995670.4420679-CDS-E-fasciculatus_F_contig1224:14502..14733Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1224 14503..14733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1224.1733.1

>prot_E-fasciculatus_F_contig1224.1733.1 ID=prot_E-fasciculatus_F_contig1224.1733.1|Name=mRNA_E-fasciculatus_F_contig1224.1733.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=202bp
MKSAFAMIGALCCGASSAGAFVLPVGRPSSSSSSSLAARRQFTRRTPGGA
SMMMSSVAEPAAAPTAAQEPERRRNVQQAIDSNDDYVSAMAQHQDKLVVI
KFYDQFCRACDEIRPRYEDLSRSHPEEDAVFFDVEFSGAKDLCKQLGIMR
LPTVQIYDGTNGRVADLPAGPSRFTDVEEKFAAVVSSKKGSGQAAVEFVA
E*
back to top

mRNA from alignment at E-fasciculatus_F_contig1224:10766..14733-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1224.1733.1 ID=mRNA_E-fasciculatus_F_contig1224.1733.1|Name=mRNA_E-fasciculatus_F_contig1224.1733.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3968bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1224:10766..14733- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGTCCGCGTTCGCGATGATCGGCGCCCTTTGCTGCGGCGCTTCCTC
TGCCGGAGCCTTCGTTCTTCCCGTGGGTAGGCCTAGCAGCAGCAGCAGCA
GCAGCCTGGCAGCCAGGAGACAATTCACCCGGAGAACTCCTGGCGGCGCG
TCGATGATGATGTCGTCCGTTGCCGAACCGGCGGCAGCGCCCACCGCTGC
GCAGGAGCCGGAGAGGAGGCGAAACGTCCAGGTAGGCGAAGGGAGAGACA
CGCGTATCACTGCCGAGAGCTTGGCTGAGCGGTTGCATGGAAGCGTGACA
CAGCAGCAGCAGCAGGTCGCCCGTCCTTTGCGCACTAACACGCATGTGTA
TGTATGCGTCGTCGAACTTGACCCTGTCTGGGCAAATGATACAGCACTCT
TTCAGCAAGTGAAACCGGTTTTTTCTCGATACATTTATTTTTCTTTTGGC
CGTTGTTGTGGGGCGACTCGTCCGCCGTGTGCGCGTGTGGCCTCTTGACG
CTGCTGCTGGGCCGTGTGCGTCCAGGAGAGCGCACCCTTCGTTGGTGGCG
GTAGCTTGCTTGCCTCTCTGTCGCACCCGTGGTGTTGTCACCCGCGCGAA
TTGCTGCCCCCCCATACCACCAAAACCACATAGACCAAAAAGCCTGCATC
ATCAGATCAACAAAGTGCGTCACAAGTTGCTCTCTGCGTACGATGTATCC
ACGATCGGCCCAACTCGAAGTTGCAGCAGCAGCTCGCGGGCAACGCACGT
GGTCTGCAGAGCCCTGCTCGCTTTGTTTCCAGCTGGTCGTTGGTAGTCAT
CCATGTGGGAGAACGCTTTTTGGCCCCGTCTCGTGATGCACAGCCACGGT
CACAAAATTTTGGTCGGGGGCAGCAGTCAGTGTAGCAGTTATGTACGCAT
AGCAGCCGGCGTTCGCGCTCGACACGTGTTATTCGTGTTCTGCATGTATT
GTGTAGCACGACGGAAGAGGAGTGCACGCTGAGTAACAACGGTACGTGTT
CGAGGAAATTAATCTTGTCCGAGACGCAAGTGAAGTCTACAGCTTGCATA
TGATGGTTGGAATCGCACTTGCTGTACCCGCTCGAGAAAATCAATATTTG
ATGGTGTGTGTTGAAGTCTACAGCAGTTAGGATGGTTGAATGTCGAAGTT
GGATTTGGTTGAACGAAACTGAAGTGGTTCGAGTCCTTACCCTGCTTGAA
GCAGATTAACCAGTGATCAAAATATCTAAACGCATATGGAGGTACTGGTA
TCACGATCATTACAGCAGTACTCTCTCCCGGCAAGCCTCTGTTGCGCTCC
GTAACGATGTACACACAAAACCCGGTTAGATGGACCGCGTTCCACCATTC
TTGTTCCACACGACTTGTACTGCAAGTGCACTCGTGTCTGTTGGAGGTCT
CAGTAAAACCGTGACTAATTAAATTATAGCACAGAATATCCGTAAATCGA
GTCCATCCATGTCCAGATGCGTGCGATGAGGGGTGTGTGACCCCCAAGTG
GTGGGTATCCGAGTCTGCTGCTCGGGACTGCCGTGTGTGACATCACCTGT
CATGCACGCGGCCTTGCACCGCACGGCGGTTTTAGTCCTCCTTTCACCTA
TCCGAACCGACCGCCGTTTTGGGCCTTGCTGACAGCTACCAGTCGAGACG
GCTACGCGCATTCTCTCGTAACAAAGGTTGCGGCGGGTGCATGCCCCTCC
GATACTTTGAGAATTGCCAACTCTTCAGACAAAGCTCCCTCCTGATGTAT
GGTTGCAGGTCACGAATTTTCGCCTTTCTATCCAGACACGCCCCTTTTAG
GGCTGCCGTTCTGAGACGGGGCACGCATTCGTTTCTTCGCATATGTAGTT
TCAACAACCAATAACCACCTGTTGGTTCCTCGCTGCCCTCTTTCGTCAGC
GCTCACGCTCGCTTACACCAGCAGTTGGTTGCCGCACTAACAATCTCCTC
GCGTGTTTCCTCTCCCTGTCCCTCACCCCTCTCGCCGGCTTCCCGTCCGT
ACCGCAAACGACGCCACGCCGAGCAGGCGATCGACTCGAACGACGACTAC
GTGAGCGCGATGGCGCAGCACCAGGATAAGCTAGTGGTGATCAAGTTTTA
CGACCAGTTCTGCAGGGCGTGCGACGAGATCCGGCCGCGATACGAGGACC
TTTCCCGTTCGCACCCGGAGGAGGACGCCGTGTTCTTCGACGTGGAGGTG
CGTGCGAAAAGAATTAAAATATAACAAAGTCTCCACCAGACTTGAACATT
CTGTCGCACCCATAACGGGATCACCATTGTTTGCGCGTCTCTCTCTCTAT
ATATATATATATGTTTTTTTTTTCCTCCCATTATTGGACTTTGTCGTCTG
CCCCTCTATATGTAGAGTTGTGTATCTATTTGGTGTTGGGTTGCACCGCT
ACCGAGATGAGTCGGGAATGTACTCCCCTTCTACGTTTTTGCCACCCTCT
GTCTGCTGTGTCATTGCTGCGCTAAGTCCTCTGCCGAAAATTTTCTTCTG
TTCCTCGCCCCCCCCTTTCGTGTGACGTGTGCCACGGCTGACTCTCTGAA
TGAAGTTCTCTGGGGCTAAGGACCTCTGCAAGCAGCTCGGCATCATGCGG
CTACCCACCGTGCAAATCTACGACGGCACAAACGGCAGGTAATTACAACA
TCGTGTGCAACAGAATACGACACTGAAAGAAGGGCTGGCGGTTTGTTTTC
GCTCCACGTGGGACGGAAAATGGAATGTACTCCGCGGAGGAGACGTGAGT
TCGACGCTGAGGCAGTCGTTGTAAGGAGATTGTATTTCCAACGATTAATA
AGACGTCGTCATCCTACCGAGACTGTTTGCCAACTCCAAGTTGGTGCACA
AACTGCGGTTTATTGCAAGCAGACCATCTTGTGAACAATAGTGCATGTGG
TTGACTATTTTTTCCTTCCCGCCCCCCCTCACAAAGCCAGCGGACGTTTG
ATGTTGAGACGCCAACTGCATATTACGCGCCAATACCCTGAACTCTTGCT
CACGGTGTACCCCCCCGCCGCCGCCCGCGCGCGTGGCCGCTTTTTCTGGA
TGCTGGATGTTTGTAGGGTGGCTGACCTCCCGGCGGGACCAAGCCGATTC
ACGGATGTGGAAGAAAAGTTCGCGGCTGTGGTTTCCTCGAAAAAGGGCAG
CGGACAAGCCGCGGTCGAGTTTGTGGCGGAGTAATAGGTTCCGGTTGGAT
GTTGAACGAAACGGCGCCCGCCAAGACAGCGGGTTCTGCTTCACGTATTG
GGCGTTTCAGTCCTTGCCCGCGGAGAAAAGTTGTAGGGTATTCTTCTTTG
CTGTCAGAAGCGTGAGTTTTTTTGGTGTGCATCAGAGCCGTCCGCTGAGC
GGATGGGAAATCAGATCGATTGGTCCGTACGTACATGTCAAGTACGGCTG
CTGTTCTGTACCCATAAGCCCGCCCCGCGGACTAGAACGCCGCTCTTGTA
AAAGACGTTGTTAATTTTACTTCATTAAGGGGGGGCGCGGGGTGTTGGAG
TGGGGAGGTGTCCTGTGTGGGTGTTTTTTTTCTTCTTTTTGTCTTTGGAG
GGTTTTGATTTGAGTGCGCGTGTTTCGTCAGGGGACCTGACTGAGAGAGA
AACCGGCTTGCCATACCTGATGTTGGAGTCCGGTCGGTGGAGGAGTATGT
ACGAGTTCTTGATGTTTTTTTTATTTCATTCGATGAAAATCAGTTATTAC
TTGAGCTTGGAAGATAACTAGATGTGTCTTGACCCGGAGGGTACCCCACC
GCACCCCGCAGAGCATGCTCTATTTTCGGGCATGTTGCCGAGATGTAGAG
TTGTTCCAAATATTGTTGTGGTTGTACATGTTTTCGGTGTAAGTGCACAC
ACTTTCGTTCGTCCGGCAACCCAGGTGCAAACGGAATCCTCTGGTTATTA
TCACAGCCAGTGTAGAGTCCACCGTACACTACCTTTAGACGACCCGCATC
TTCACAACGCGCTCCTAC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1224:10766..14733-

>mRNA_E-fasciculatus_F_contig1224.1733.1 ID=mRNA_E-fasciculatus_F_contig1224.1733.1|Name=mRNA_E-fasciculatus_F_contig1224.1733.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1224:10766..14733- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAAGTCCGCGTTCGCGATGATCGGCGCCCTTTGCTGCGGCGCTTCCTC
TGCCGGAGCCTTCGTTCTTCCCGTGGGTAGGCCTAGCAGCAGCAGCAGCA
GCAGCCTGGCAGCCAGGAGACAATTCACCCGGAGAACTCCTGGCGGCGCG
TCGATGATGATGTCGTCCGTTGCCGAACCGGCGGCAGCGCCCACCGCTGC
GCAGGAGCCGGAGAGGAGGCGAAACGTCCAGATGAAGTCCGCGTTCGCGA
TGATCGGCGCCCTTTGCTGCGGCGCTTCCTCTGCCGGAGCCTTCGTTCTT
CCCGTGGGTAGGCCTAGCAGCAGCAGCAGCAGCAGCCTGGCAGCCAGGAG
ACAATTCACCCGGAGAACTCCTGGCGGCGCGTCGATGATGATGTCGTCCG
TTGCCGAACCGGCGGCAGCGCCCACCGCTGCGCAGGAGCCGGAGAGGAGG
CGAAACGTCCAGCAGGCGATCGACTCGAACGACGACTACGTGAGCGCGAT
GGCGCAGCACCAGGATAAGCTAGTGGTGATCAAGTTTTACGACCAGTTCT
GCAGGGCGTGCGACGAGATCCGGCCGCGATACGAGGACCTTTCCCGTTCG
CACCCGGAGGAGGACGCCGTGTTCTTCGACGTGGAGCAGGCGATCGACTC
GAACGACGACTACGTGAGCGCGATGGCGCAGCACCAGGATAAGCTAGTGG
TGATCAAGTTTTACGACCAGTTCTGCAGGGCGTGCGACGAGATCCGGCCG
CGATACGAGGACCTTTCCCGTTCGCACCCGGAGGAGGACGCCGTGTTCTT
CGACGTGGAGTTCTCTGGGGCTAAGGACCTCTGCAAGCAGCTCGGCATCA
TGCGGCTACCCACCGTGCAAATCTACGACGGCACAAACGGCAGTTCTCTG
GGGCTAAGGACCTCTGCAAGCAGCTCGGCATCATGCGGCTACCCACCGTG
CAAATCTACGACGGCACAAACGGCAGGGTGGCTGACCTCCCGGCGGGACC
AAGCCGATTCACGGATGTGGAAGAAAAGTTCGCGGCTGTGGTTTCCTCGA
AAAAGGGCAGCGGACAAGCCGCGGTCGAGTTTGTGGCGGAGTAAGGTGGC
TGACCTCCCGGCGGGACCAAGCCGATTCACGGATGTGGAAGAAAAGTTCG
CGGCTGTGGTTTCCTCGAAAAAGGGCAGCGGACAAGCCGCGGTCGAGTTT
GTGGCGGAGTAA
back to top