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Homology
BLAST of mRNA_E-fasciculatus_F_contig12237.1731.1 vs. uniprot
Match: D7G4L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L4_ECTSI) HSP 1 Score: 296 bits (757), Expect = 2.700e-91 Identity = 246/386 (63.73%), Postives = 260/386 (67.36%), Query Frame = 2
Query: 335 MADAGTTTAELIAVAEELAKTSSKIESVEMALSGQGVYLGITDKDTLIGQLDVLQKKEAQLQTKELFIMAAVAGASATAVQAASLSVAFPP-GAPPTGAAPASTDTSAEELTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGS-------IAHGGPDSSSSGEHGDATTGQHGHQDXXXXXXHVDDGGSLGGAEAAAAASVVPASAVXXXXXXXXXXXXXXXALAEVDGQEVVMPD-------VGASSPTVDVGTTVAAGAAEAAATLEGGVVTGVAEGVPNGGXXXXXXXXXXXXXXXXXXXXXXXXXVTPAVGFVSGGGGDDGVVGMAHGDVQMAPVDLALASPHQLLAQSPAPALSNPPPHVDGATGAAG-LPLSLEAVG 1444
MADAGTTTAEL AVAE+LAKTS+KIESVEMALSGQGVYLGITDKDTL+ QLDVLQKKEAQLQTKELFIMAAVAGASA+AVQAAS+SVAFPP GA PTG APASTDTS EELTS XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX IAHGGPD+SS GEHGDATTGQ GH HV D GG AEV GQEVV+PD GA SPTV+ AGAA+ AATLEGG VT V EGV N G VTPA G+VSGGGGD G VG+ HGDVQ +ALASPHQLLAQSPAP LS+P HV+GA GAA LP SLEAVG
Sbjct: 1 MADAGTTTAELTAVAEDLAKTSAKIESVEMALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVAGASASAVQAASISVAFPPVGALPTGTAPASTDTSMEELTSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAHGGPDNSS-GEHGDATTGQDGH--------HVADDSDFGG--------------------------------AEVGGQEVVVPDGGDIGVASGAPSPTVE------AGAAQVAATLEGGGVTDVTEGVLNAG-------------------------VTPAAGYVSGGGGDGGAVGVVHGDVQ-----IALASPHQLLAQSPAPELSSPTLHVNGAPGAAAELPPSLEAVG 309
BLAST of mRNA_E-fasciculatus_F_contig12237.1731.1 vs. uniprot
Match: A0A6H5KKE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE2_9PHAE) HSP 1 Score: 159 bits (401), Expect = 5.820e-40 Identity = 225/389 (57.84%), Postives = 232/389 (59.64%), Query Frame = 2
Query: 422 MALSGQGVYLGITDKDTLIGQLDVLQKKEAQLQTKELFIMAAVAGASATAVQAASLSVAFPP-GAPPTGAAPASTDTSAEELTSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGS------IAHGGPDSSSSGEHGDATTGQHGHQDXXXXXXHVDDGGSLGGAEAA----------------------------------------AAASVVPASAVXXXXXXXXXXXXXXXALAEVDGQEVVMPDVGASSPTVDVGTTVAAGAAEAAATLEGGVVTGVAEGVPNGGXXXXXXXXXXXXXXXXXXXXXXXXXVTPAVGFVSGGGGDDGVVGMAHGDVQMAPVDLALASPHQLLAQSPAPALSNPPPHVDGATGAAG-LPLSLEAVG 1444
MALSGQGVYLGITDKDTL+ QLDVLQKKEAQLQTKELFIMAAV GASA AFP GA PTG APASTDTS EELTSS XXXXXXXXXXXXXXXXXXXXXXXXXXXX IAH GPDSSS GEHGDATTGQ H HV D GGAE A AA + P V XXXXXXXXXXXX AEV GQEVV+PD GAS G VA+GA E XXXXXXXXXXXXXXXXXXXXXXXXX AV HGD+QMAPV+LALASPHQLLAQSPAP LS+P HV A GAA P SLEAVG
Sbjct: 1 MALSGQGVYLGITDKDTLLSQLDVLQKKEAQLQTKELFIMAAVTGASAXXXXXXXX-XAFPSMGALPTGTAPASTDTSTEELTSSFSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIAHRGPDSSS-GEHGDATTGQDCH--------HVADDSDFGGAETAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPAPAPXXXVPXXXXXXXXXXXXP---AEVGGQEVVVPDGGAS------GNGVASGAPSPTVEAXXXXXXXTLEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAV----------------HGDLQMAPVELALASPHQLLAQSPAPELSSPTLHVGRAPGAAAEFPPSLEAVG 354
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 1446 |
| Cds size | 1152 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12237.1731.1 >prot_E-fasciculatus_F_contig12237.1731.1 ID=prot_E-fasciculatus_F_contig12237.1731.1|Name=mRNA_E-fasciculatus_F_contig12237.1731.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=384bp
MEAHQHPQQYYGGGMADAGTTTAELIAVAEELAKTSSKIESVEMALSGQG VYLGITDKDTLIGQLDVLQKKEAQLQTKELFIMAAVAGASATAVQAASLS VAFPPGAPPTGAAPASTDTSAEELTSSSSSSSTTTATPSTAAAATVPVPA AGAGSSSGSIAHGGPDSSSSGEHGDATTGQHGHQDGHEDGHHVDDGGSLG GAEAAAAASVVPASAVPAAAASAVPAAAPAAALAEVDGQEVVMPDVGASS PTVDVGTTVAAGAAEAAATLEGGVVTGVAEGVPNGGVPNGGVPNGGVPNG GVPNGGVPDEGVTPAVGFVSGGGGDDGVVGMAHGDVQMAPVDLALASPHQ LLAQSPAPALSNPPPHVDGATGAAGLPLSLEAVG back to topmRNA from alignment at E-fasciculatus_F_contig12237:4..3580- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12237.1731.1 ID=mRNA_E-fasciculatus_F_contig12237.1731.1|Name=mRNA_E-fasciculatus_F_contig12237.1731.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3577bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12237:4..3580- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GCTCTATGGATGTGACGATGTCACGATGTATGTATTCGTATTATGGTATC
AAACAATAGATGTATGTGTGTTGCCCGATACGAGCACGCCACACACGCAC
AGCGAGAGACGGAGAAAAAAGCCGTAGACGAGACAGCTGTTGTTGCTGCG
ACTGCCGTCGGTTGAGACCCTTACACCTTTCACGCATGGTGGTCCTCTGC
AACGTTGTTTGTAGATACTACCGACGAACCAACGAAAGCCAGCGCTCGTC
CTGCACTCCTGCTGCCGCTGCTGGTCGCTGCTGCGTATACACATGGAAGC
CCATCAACACCCACAACAGTACTACGGCGGCGGCATGGCCGATGCTGGTA
CGACCACAGCGGAGCTGATCGCTGTAGCAGAAGAGCTCGCTAAGACTTCC
TCGAAGGTGTGTGCTTGTTTGCTGCTCTGTATGATCGATTGTCCTTGTTG
TTCTTGTGTCGTCGGTCGCGCGATCACACTCCCGCCGCCGCGCGATACTG
GGTGCGTCGGTCGCATTCGGACAGTCCCATCATCCATCATCATTCATCAT
CCCTCATCATCCAAAGGAGTAAATCATCATCTGCTGTCGATATGTGTATG
GAACATTCGAGCTTCCCAGCCTGCAGCAGTGCATGCCGAGAGAAGTACCC
CCATTGACCGATTGGCATTGTAAGAAGAAGTATTCTACAACCTGCTGCTG
CTGCTGCTGCTGCTGTACTTGCGACCTTCGCCGCCGCAGAGGGTGCGTGT
GGTGGTTTGGTACTCCGTAGGTGCTCTGCGGAGTATCTATGTAATCGAAC
AACACACGCGCGTTTTGTTATCCATGCTTCACTACAGTACAACGTATGAG
GTGGTACAGGTATGCAGTCTACATGAGTAAACTGTGCTTGTAGTTGCCGT
GCTCTCTCGCTGTCGTTCGTGCGCCTCTATTTTGCCTGGCATCGCCCCCC
TATTTAGCGACAGGCCCCCCTCTACAATACCTTGAGTGCTTTGCATTTTC
CCCACGATCCTCTGCACTACAAATAGTCTCTGCACCCCCCCCATGTTCCC
AGATGTGTCACAGCACCACACCCCACAGAAGCTCTGCTGTGTTAACATGC
CCAGCTGAGAGGAGGGTTCACGGGGATACTGGTAATATGTTACAGCAGTC
CTCGCTATGCATATGTTCGGAAGAATTTTCGGCACCAGCTAACGGAAAGA
TCTCAGCCCTACGTGGGCTTTGTCCTGTAGCAGACAAGTCAATACACGGC
ATGCGAAAATTCCCACTCGACACTCGAAGTTGATTCCACCGCAGTTGGAC
CAAATAGAATACTTCCACAACAACCGATGTGTTGTGTGTCTAGCCCTGTT
GTCTAGCCCCCAAAACAACCGACATTCCTGACGAAACACCGACGTGTGCG
TGTGGTCTTCAGCTTTGCCTCTTGCGCACCATCACCGACGTCGCTTCCCG
ATAACCCGCCGGCGTCCGTCCACAGATTGAAAGCGTGGAGATGGCGCTCA
GCGGACAGGGCGTGTACCTGGGTATCACCGACAAGGATACCCTGATAGGC
CAGCTGGACGTGCTGCAGAAGAAGGAGGCTCAGCTGCAGACGAAGGAGCT
GTTCATCATGGCCGGTGCGTGGCTGCCGTAATAGCGAACGGGGACGACGG
ACACAGCAAAGAAAACCTATTGTAAAGAAGATTCCTTTCCTCAACACCTC
TTCGACACGAAGAAGAAGACAGCAAACAAGAATGAAGTATTGTAAATAGC
CGTTGGCATTGGTTGGTGTAAATATGCTATTATAGAGAAGCACGCCCAAG
TCCTATCGGGGTGTTTCCATGGGCACGTGTAAATACTGTAGTAAATACTG
CTGTGGAATTTGTTGGTCTTTGGGCAATGTGTGTTTCGTGCCAAGGTAAA
AGGTTGTTTGTTCCCTCAGGGTCAGGGTTAGCGCTAGGACCGGAAGGACA
GGAAGGACGGGAAGGGAAGGGAAGGCTAATAACCCCGTCTCTTGTCTTGT
CTTCTGTCTTCTGTCTTCTCTTCCTTGCCGAGTCAGTCCACTCGTAGACC
ACTTCAAGCATCGTTGTTTTCGCTCGCACCAACCATACTCATCGCCCAGA
TCTGTTGTTCTTGTCACATGGAAAACCTTGGTTATTTTCAACGACAGCGT
TATCTTACTCCCCCCCCCTCCTTGTATGTACTCGTTCCAGCCGTCGCCGG
AGCATCGGCAACAGCGGTTCAAGCGGCGTCATTGTCCGTAGCTTTTCCAC
CGGGCGCCCCGCCTACCGGTGCGGCGCCCGCCTCAACCGACACCTCGGCC
GAGGAGCTTACATCCTCCTCCTCGTCGTCGTCGACTACCACAGCTACCCC
GTCTACCGCCGCAGCCGCCACTGTGCCGGTCCCAGCGGCGGGTGCCGGTA
GCAGCAGCGGGAGTATCGCGCATGGTGGTCCCGATAGCAGCAGCAGCGGT
GAGCACGGCGATGCCACCACCGGTCAACATGGTCATCAAGATGGTCATGA
AGATGGTCATCACGTCGACGACGGCGGCAGTCTCGGCGGGGCTGAAGCTG
CTGCTGCTGCTTCTGTTGTGCCTGCTTCTGCCGTGCCGGCTGCTGCTGCT
TCTGCTGTGCCTGCTGCTGCGCCTGCTGCTGCGCTTGCCGAGGTGGACGG
GCAAGAGGTTGTTATGCCCGATGTTGGTGCTTCCTCTCCGACCGTGGACG
TCGGCACCACCGTTGCGGCAGGAGCAGCAGAAGCGGCAGCTACCCTTGAG
GGCGGGGTAGTGACGGGTGTTGCAGAGGGCGTTCCTAACGGAGGCGTTCC
TAACGGAGGCGTTCCTAACGGAGGCGTTCCTAATGGAGGCGTTCCTAATG
GAGGTGTTCCTGACGAAGGCGTTACTCCTGCTGTCGGGTTTGTCAGTGGT
GGTGGTGGCGACGATGGTGTGGTCGGAATGGCTCATGGTGATGTGCAGAT
GGCGCCTGTCGACCTGGCGTTGGCTTCCCCTCATCAGCTCCTTGCCCAGG
TACAGAAAGATAAGATCACCACAAGCTCGTGGATTTCCCTGCCCAGAGTG
TCAGTCAAACTGATTTCCCCGCACAACGCAGCAGAAATGATACAGGCCCG
TGCTGCGTCCAAAACCCGTGGTATACACGAGTAGGACCGTCGTGTCCATC
ACCACTCGATTTAGCAAATAGCGCTGCGACAAAAGGGCAAAAGCCGAACT
CAGTTTTCACAAGAAGAAATCGTGATTGTGTCGTTGATGTGCGTGGGCAC
GACGAACATGTCGAACAGAGCGGCTATTGAAGGGAATATAAGCACACCAG
TCATGAGAACATCCCCTTCGTCGAAGCACGCTTGCAGGCATGGGTTCAAT
GTTGGAACGAGGTAGCCTCGTCATCACGACGGCTATATATGCAGGATGTA
CGGCTATCACCGTACGAACCTCTCACGAGCGATTTGTTCGCGGGACGCCT
TTTCCCTTGCGCCCCTACTCCTCGCCGCTGCAAACAGTCGCCGGCTCCCG
CCCTGTCCAACCCACCGCCCCACGTCGACGGCGCCACCGGGGCAGCCGGG
TTGCCCCTGTCCCTCGAAGCGGTCGGT back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12237:4..3580- >mRNA_E-fasciculatus_F_contig12237.1731.1 ID=mRNA_E-fasciculatus_F_contig12237.1731.1|Name=mRNA_E-fasciculatus_F_contig12237.1731.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2304bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12237:4..3580- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGGAAGCCCATCAACACCCACAACAGTACTACGGCGGCGGCATGGCCGA TGCTGGTACGACCACAGCGGAGCTGATCGCTGTAGCAGAAGAGCTCGCTA AGACTTCCTCGAAGATGGAAGCCCATCAACACCCACAACAGTACTACGGC GGCGGCATGGCCGATGCTGGTACGACCACAGCGGAGCTGATCGCTGTAGC AGAAGAGCTCGCTAAGACTTCCTCGAAGATTGAAAGCGTGGAGATGGCGC TCAGCGGACAGGGCGTGTACCTGGGTATCACCGACAAGGATACCCTGATA GGCCAGCTGGACGTGCTGCAGAAGAAGGAGGCTCAGCTGCAGACGAAGGA GCTGTTCATCATGGCCGATTGAAAGCGTGGAGATGGCGCTCAGCGGACAG GGCGTGTACCTGGGTATCACCGACAAGGATACCCTGATAGGCCAGCTGGA CGTGCTGCAGAAGAAGGAGGCTCAGCTGCAGACGAAGGAGCTGTTCATCA TGGCCGCCGTCGCCGGAGCATCGGCAACAGCGGTTCAAGCGGCGTCATTG TCCGTAGCTTTTCCACCGGGCGCCCCGCCTACCGGTGCGGCGCCCGCCTC AACCGACACCTCGGCCGAGGAGCTTACATCCTCCTCCTCGTCGTCGTCGA CTACCACAGCTACCCCGTCTACCGCCGCAGCCGCCACTGTGCCGGTCCCA GCGGCGGGTGCCGGTAGCAGCAGCGGGAGTATCGCGCATGGTGGTCCCGA TAGCAGCAGCAGCGGTGAGCACGGCGATGCCACCACCGGTCAACATGGTC ATCAAGATGGTCATGAAGATGGTCATCACGTCGACGACGGCGGCAGTCTC GGCGGGGCTGAAGCTGCTGCTGCTGCTTCTGTTGTGCCTGCTTCTGCCGT GCCGGCTGCTGCTGCTTCTGCTGTGCCTGCTGCTGCGCCTGCTGCTGCGC TTGCCGAGGTGGACGGGCAAGAGGTTGTTATGCCCGATGTTGGTGCTTCC TCTCCGACCGTGGACGTCGGCACCACCGTTGCGGCAGGAGCAGCAGAAGC GGCAGCTACCCTTGAGGGCGGGGTAGTGACGGGTGTTGCAGAGGGCGTTC CTAACGGAGGCGTTCCTAACGGAGGCGTTCCTAACGGAGGCGTTCCTAAT GGAGGCGTTCCTAATGGAGGTGTTCCTGACGAAGGCGTTACTCCTGCTGT CGGGTTTGTCAGTGGTGGTGGTGGCGACGATGGTGTGGTCGGAATGGCTC ATGGTGATGTGCAGATGGCGCCTGTCGACCTGGCGTTGGCTTCCCCTCAT CAGCTCCTTGCCCAGCCGTCGCCGGAGCATCGGCAACAGCGGTTCAAGCG GCGTCATTGTCCGTAGCTTTTCCACCGGGCGCCCCGCCTACCGGTGCGGC GCCCGCCTCAACCGACACCTCGGCCGAGGAGCTTACATCCTCCTCCTCGT CGTCGTCGACTACCACAGCTACCCCGTCTACCGCCGCAGCCGCCACTGTG CCGGTCCCAGCGGCGGGTGCCGGTAGCAGCAGCGGGAGTATCGCGCATGG TGGTCCCGATAGCAGCAGCAGCGGTGAGCACGGCGATGCCACCACCGGTC AACATGGTCATCAAGATGGTCATGAAGATGGTCATCACGTCGACGACGGC GGCAGTCTCGGCGGGGCTGAAGCTGCTGCTGCTGCTTCTGTTGTGCCTGC TTCTGCCGTGCCGGCTGCTGCTGCTTCTGCTGTGCCTGCTGCTGCGCCTG CTGCTGCGCTTGCCGAGGTGGACGGGCAAGAGGTTGTTATGCCCGATGTT GGTGCTTCCTCTCCGACCGTGGACGTCGGCACCACCGTTGCGGCAGGAGC AGCAGAAGCGGCAGCTACCCTTGAGGGCGGGGTAGTGACGGGTGTTGCAG AGGGCGTTCCTAACGGAGGCGTTCCTAACGGAGGCGTTCCTAACGGAGGC GTTCCTAATGGAGGCGTTCCTAATGGAGGTGTTCCTGACGAAGGCGTTAC TCCTGCTGTCGGGTTTGTCAGTGGTGGTGGTGGCGACGATGGTGTGGTCG GAATGGCTCATGGTGATGTGCAGATGGCGCCTGTCGACCTGGCGTTGGCT TCCCCTCATCAGCTCCTTGCCCAGTCGCCGGCTCCCGCCCTGTCCAACCC ACCGCCCCACGTCGACGGCGCCACCGGGGCAGCCGGGTTGCCCCTGTCCC TCGAAGCGGTCGGTTCGCCGGCTCCCGCCCTGTCCAACCCACCGCCCCAC GTCGACGGCGCCACCGGGGCAGCCGGGTTGCCCCTGTCCCTCGAAGCGGT CGGT back to top
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