mRNA_E-fasciculatus_F_contig12236.1730.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12236.1730.1
Unique NamemRNA_E-fasciculatus_F_contig12236.1730.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: D8LDG7_ECTSI (Putative ATP-dependent helicase YFR038W n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDG7_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.170e-21
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR
Sbjct:  717 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 762          
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: A0A6H5KPB1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPB1_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 2.970e-21
Identity = 45/46 (97.83%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            ISKKKLERVAVQGGDFGKAG+RTYGEMTVPHLRKLLEDDVEDLAKR
Sbjct:  769 ISKKKLERVAVQGGDFGKAGKRTYGEMTVPHLRKLLEDDVEDLAKR 814          
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: I2CQK3_NANGC (Helicase-like protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CQK3_NANGC)

HSP 1 Score: 60.5 bits (145), Expect = 6.410e-11
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            ISKKKLER+++ GGDF +AGRR+ G++T   LR+LL DDV+D+ +R
Sbjct:   31 ISKKKLERLSITGGDFRQAGRRSRGDITTEGLRRLLADDVKDIQRR 76          
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: A0A7R9U2J9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U2J9_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 7.140e-10
Identity = 28/46 (60.87%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            +SKKKLER+A+ GGD+ +AGRR+ G++T+  L+KLLEDDV  L KR
Sbjct:  691 VSKKKLERMAIGGGDYRRAGRRSRGQLTLEALKKLLEDDVASLDKR 736          
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: F0Y786_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y786_AURAN)

HSP 1 Score: 61.6 bits (148), Expect = 7.140e-10
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            ISKKKLER+AVQGGD+ KAGRR+ GE+T   LR LL DDV ++A+R
Sbjct:  637 ISKKKLERMAVQGGDYNKAGRRSRGELTTDGLRSLLNDDV-NIAQR 681          
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: A0A7S2NXS4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NXS4_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.590e-9
Identity = 28/46 (60.87%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            ISKKKLER+A+ GGDF KAGRR+ GE +   L  LL+DD++DL  R
Sbjct:  116 ISKKKLERMAITGGDFRKAGRRSKGEFSAKDLSTLLQDDIKDLQAR 161          
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: W7TYC6_9STRA (Snf2 domanin containing helicase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TYC6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.820e-9
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            ISKKKLER+++ GGDF +AGRR+ G++T   LR+LL DDV+D+ +R
Sbjct:  771 ISKKKLERLSITGGDFRQAGRRSRGDITTEGLRRLLADDVKDIQRR 816          
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: A0A7S1UBE1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UBE1_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.050e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            +SKKKLER+A+ GGD+  AGRR+ GE+T+  L+ LLEDDV  L  R
Sbjct:   55 VSKKKLERMAIGGGDYRSAGRRSRGELTLDALKALLEDDVASLGNR 100          
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: A0A448ZNT5_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZNT5_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 2.490e-9
Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            +SKKKLER+ + GGDF KAGRR+ GEMT   L+ LL+ D++DL  R
Sbjct:  714 VSKKKLERMTIAGGDFRKAGRRSQGEMTFDKLQNLLQSDIQDLQGR 759          
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Match: A0A7S0BX46_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0BX46_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.690e-8
Identity = 27/46 (58.70%), Postives = 33/46 (71.74%), Query Frame = 1
Query:    1 ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR 138
            ISKKKLER+A+ GGDF KAG R+ G  +   L  LLEDD+EDL  +
Sbjct:  361 ISKKKLERMAIVGGDFRKAGARSKGAFSAKALSSLLEDDIEDLQAK 406          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12236.1730.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LDG7_ECTSI1.170e-21100.00Putative ATP-dependent helicase YFR038W n=1 Tax=Ec... [more]
A0A6H5KPB1_9PHAE2.970e-2197.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
I2CQK3_NANGC6.410e-1158.70Helicase-like protein (Fragment) n=1 Tax=Nannochlo... [more]
A0A7R9U2J9_9STRA7.140e-1060.87Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0Y786_AURAN7.140e-1067.39Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S2NXS4_9STRA1.590e-960.87Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
W7TYC6_9STRA1.820e-958.70Snf2 domanin containing helicase n=3 Tax=Monodopsi... [more]
A0A7S1UBE1_9STRA2.050e-958.70Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A448ZNT5_9STRA2.490e-958.70Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A7S0BX46_9STRA5.690e-858.70Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12236contigE-fasciculatus_F_contig12236:3676..3813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue8.9e-18
Seed eggNOG ortholog2880.D8LDG7
KEGG koko:K19001
EggNOG free text desc.helicase activity
EggNOG OGsCOG0553@1,KOG0385@2759
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size138
Cds size138
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927731.585475-CDS-E-fasciculatus_F_contig12236:3675..38131622927731.585475-CDS-E-fasciculatus_F_contig12236:3675..3813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12236 3676..3813 -
1695995670.1237738-CDS-E-fasciculatus_F_contig12236:3675..38131695995670.1237738-CDS-E-fasciculatus_F_contig12236:3675..3813Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12236 3676..3813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12236.1730.1prot_E-fasciculatus_F_contig12236.1730.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12236 3676..3813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12236.1730.1

>prot_E-fasciculatus_F_contig12236.1730.1 ID=prot_E-fasciculatus_F_contig12236.1730.1|Name=mRNA_E-fasciculatus_F_contig12236.1730.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=46bp
ISKKKLERVAVQGGDFGKAGRRTYGEMTVPHLRKLLEDDVEDLAKR
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mRNA from alignment at E-fasciculatus_F_contig12236:3676..3813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12236.1730.1 ID=mRNA_E-fasciculatus_F_contig12236.1730.1|Name=mRNA_E-fasciculatus_F_contig12236.1730.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=138bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12236:3676..3813- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTCGAAGAAGAAGCTGGAGAGAGTGGCGGTGCAGGGGGGCGACTTCGG GAAGGCCGGTAGACGAACGTACGGCGAGATGACAGTGCCGCACCTCCGGA AGCTCCTCGAGGACGACGTGGAGGACCTCGCCAAGCGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12236:3676..3813-

>mRNA_E-fasciculatus_F_contig12236.1730.1 ID=mRNA_E-fasciculatus_F_contig12236.1730.1|Name=mRNA_E-fasciculatus_F_contig12236.1730.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12236:3676..3813- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATCTCGAAGAAGAAGCTGGAGAGAGTGGCGGTGCAGGGGGGCGACTTCGG
GAAGGCCGGTAGACGAACGTACGGCGAGATGACAGTGCCGCACCTCCGGA
AGCTCCTCGAGGACGACGTGGAGGACCTCGCCAAGCGCATCTCGAAGAAG
AAGCTGGAGAGAGTGGCGGTGCAGGGGGGCGACTTCGGGAAGGCCGGTAG
ACGAACGTACGGCGAGATGACAGTGCCGCACCTCCGGAAGCTCCTCGAGG
ACGACGTGGAGGACCTCGCCAAGCGC
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