mRNA_E-fasciculatus_F_contig12230.1729.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12230.1729.1
Unique NamemRNA_E-fasciculatus_F_contig12230.1729.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12230.1729.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12230contigE-fasciculatus_F_contig12230:150..488 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size340
Cds size303
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927731.511712-CDS-E-fasciculatus_F_contig12230:149..4521622927731.511712-CDS-E-fasciculatus_F_contig12230:149..452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12230 150..452 +
1695995670.104531-CDS-E-fasciculatus_F_contig12230:149..4521695995670.104531-CDS-E-fasciculatus_F_contig12230:149..452Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12230 150..452 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927731.5287766-UTR-E-fasciculatus_F_contig12230:452..4881622927731.5287766-UTR-E-fasciculatus_F_contig12230:452..488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12230 453..488 +
1695995670.11381-UTR-E-fasciculatus_F_contig12230:452..4881695995670.11381-UTR-E-fasciculatus_F_contig12230:452..488Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12230 453..488 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12230.1729.1prot_E-fasciculatus_F_contig12230.1729.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12230 150..452 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12230.1729.1

>prot_E-fasciculatus_F_contig12230.1729.1 ID=prot_E-fasciculatus_F_contig12230.1729.1|Name=mRNA_E-fasciculatus_F_contig12230.1729.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
GGGRGERRDIHLSLVNTSCLPWNKRVFVSCGEGVWGFNPPTRNLVEVYHN
CLLGRSFAAVGDACTGTASCAGVLPSCVERSGGDRLPDDVNFCVCWRGGG
*
back to top

mRNA from alignment at E-fasciculatus_F_contig12230:150..488+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12230.1729.1 ID=mRNA_E-fasciculatus_F_contig12230.1729.1|Name=mRNA_E-fasciculatus_F_contig12230.1729.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=339bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12230:150..488+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGGGGGAGGGGCGAGAGGAGAGATATACATCTCTCGCTTGTAAATAC
GTCATGCCTGCCTTGGAACAAGCGTGTTTTCGTGTCGTGCGGGGAGGGGG
TGTGGGGGTTCAACCCCCCAACCAGGAATTTGGTGGAGGTATATCACAAC
TGCCTACTTGGCCGTTCGTTCGCGGCCGTCGGTGATGCATGTACAGGCAC
CGCATCTTGTGCTGGCGTTCTCCCGTCATGCGTGGAACGAAGTGGGGGGG
ATAGACTTCCTGATGACGTCAATTTTTGCGTGTGTTGGCGAGGTGGGGGC
TGAAAGAACGGCAGGAGGTGGTAACGACATGCACAGCCC
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12230:150..488+

>mRNA_E-fasciculatus_F_contig12230.1729.1 ID=mRNA_E-fasciculatus_F_contig12230.1729.1|Name=mRNA_E-fasciculatus_F_contig12230.1729.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12230:150..488+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGAGGGGGGAGGGGCGAGAGGAGAGATATACATCTCTCGCTTGTAAATAC
GTCATGCCTGCCTTGGAACAAGCGTGTTTTCGTGTCGTGCGGGGAGGGGG
TGTGGGGGTTCAACCCCCCAACCAGGAATTTGGTGGAGGTATATCACAAC
TGCCTACTTGGCCGTTCGTTCGCGGCCGTCGGTGATGCATGTACAGGCAC
CGCATCTTGTGCTGGCGTTCTCCCGTCATGCGTGGAACGAAGTGGGGGGG
ATAGACTTCCTGATGACGTCAATTTTTGCGTGTGTTGGCGAGGTGGGGGC
TGAGGAGGGGGGAGGGGCGAGAGGAGAGATATACATCTCTCGCTTGTAAA
TACGTCATGCCTGCCTTGGAACAAGCGTGTTTTCGTGTCGTGCGGGGAGG
GGGTGTGGGGGTTCAACCCCCCAACCAGGAATTTGGTGGAGGTATATCAC
AACTGCCTACTTGGCCGTTCGTTCGCGGCCGTCGGTGATGCATGTACAGG
CACCGCATCTTGTGCTGGCGTTCTCCCGTCATGCGTGGAACGAAGTGGGG
GGGATAGACTTCCTGATGACGTCAATTTTTGCGTGTGTTGGCGAGGTGGG
GGCTGA
back to top