prot_E-fasciculatus_F_contig12225.1728.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig12225.1728.1
Unique Nameprot_E-fasciculatus_F_contig12225.1728.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length407
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12225.1728.1 vs. uniprot
Match: D8LI19_ECTSI (Circadian RNA-binding protein CHLAMY 1 subunit C1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI19_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 5.620e-44
Identity = 150/413 (36.32%), Postives = 156/413 (37.77%), Query Frame = 0 
Query:    1 MSNANVELFQGYPDGHPRDVFITGTTTEVDLAVAMVDEVIAAGTASDNXXXXXXXXX-----APPFTGGPVLVGTPSVASXXXXXXXXXXXXXXXXXXXXXXXXITHNFGDLGGLGNGXXXXXXXXXXXXXXNGHPASFSSNSPXXXXATQMAIDNLHKXXXXXXXXXXXXXXXXXXXXXXXXXPAGMMGAHAEYLAQQEALARQHQIQSPMLTVDWQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNSVEELLAKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIKIPFGPQKKIQKAIREATANMQGAASAANGAAA--------------------------TEDEPAAADLCAICMELPIEVTFVPCGHFICCVKCGNR 382
            MSNANVELFQGYPDGHPRDVFITGT  EVDLA  +VDEVIA+GTASD+  XXXXXXX     A  F  GPVL   PS A                                                                                                                                                                                                        +ELLAKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIKIPFGPQKKIQKAIREATANM+ AA+                                 TEDEP AADLCAICME PIEVTFV CGHFICCV CGNR
Sbjct:  326 MSNANVELFQGYPDGHPRDVFITGTADEVDLAATLVDEVIASGTASDSTAXXXXXXXXGIGRALSFASGPVLGFNPSSALS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QELLAKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIKIPFGPQKKIQKAIREATANMERAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDEPRAADLCAICMENPIEVTFVGCGHFICCVTCGNR 540
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BLAST of mRNA_E-fasciculatus_F_contig12225.1728.1 vs. uniprot
Match: A0A6H5KMM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM6_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.080e-15
Identity = 42/48 (87.50%), Postives = 44/48 (91.67%), Query Frame = 0 
Query:    1 MSNANVELFQGYPDGHPRDVFITGTTTEVDLAVAMVDEVIAAGTASDN 48
            MSNANVELFQGYPDGHPRDVFITGT  EVDLA  +VDEVIA+GTASDN
Sbjct:  760 MSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASDN 807
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12225.1728.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LI19_ECTSI5.620e-4436.32Circadian RNA-binding protein CHLAMY 1 subunit C1 ... [more]
A0A6H5KMM6_9PHAE1.080e-1587.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 214..235
NoneNo IPR availablePFAMPF13920zf-C3HC4_3coord: 353..398
e-value: 5.9E-8
score: 32.5
NoneNo IPR availablePANTHERPTHR14879CASPASE REGULATOR, RING FINGER DOMAIN-CONTAININGcoord: 42..402
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 354..398
IPR001660Sterile alpha motif domainSMARTSM00454SAM_4coord: 266..331
e-value: 8.6E-6
score: 35.2
IPR001660Sterile alpha motif domainPFAMPF00536SAM_1coord: 271..326
e-value: 1.4E-5
score: 25.4
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 334..405
e-value: 2.2E-10
score: 41.9
IPR013761Sterile alpha motif/pointed domain superfamilyGENE3D1.10.150.50coord: 271..333
e-value: 1.2E-13
score: 52.6
IPR013761Sterile alpha motif/pointed domain superfamilySUPERFAMILY47769SAM/Pointed domaincoord: 265..333
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 355..392
score: 8.653

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12225contigE-fasciculatus_F_contig12225:244..4033 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12225.1728.1mRNA_E-fasciculatus_F_contig12225.1728.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig12225 241..4033 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig12225.1728.1 ID=prot_E-fasciculatus_F_contig12225.1728.1|Name=mRNA_E-fasciculatus_F_contig12225.1728.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=407bp
MSNANVELFQGYPDGHPRDVFITGTTTEVDLAVAMVDEVIAAGTASDNTA
AAAAAGGAPPFTGGPVLVGTPSVASVGTPSVASVGTPSVASVGTPSVSSI
THNFGDLGGLGNGGGAAAAAAAAAAGMNGHPASFSSNSPASAAATQMAID
NLHKPPPPPPPPGMGGPPAGGAAAQPHHHPAGMMGAHAEYLAQQEALARQ
HQIQSPMLTVDWQQQQQQQQLQQQLQQQQQQQQQQQPQPQPQKGAAPAAA
AAAPAAASPATAAAPPPPPPFNSVEELLAKAGQMHLLPNFLEQEFDVNAI
VLMEEQDFDEIKIPFGPQKKIQKAIREATANMQGAASAANGAAATEDEPA
AADLCAICMELPIEVTFVPCGHFICCVKCGNRQVGSPCPLPQCRIMVERS
VQPYTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013761SAM/pointed_sf
IPR013083Znf_RING/FYVE/PHD
IPR001660SAM