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Homology
BLAST of mRNA_E-fasciculatus_F_contig12225.1728.1 vs. uniprot
Match: D8LI19_ECTSI (Circadian RNA-binding protein CHLAMY 1 subunit C1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI19_ECTSI) HSP 1 Score: 172 bits (435), Expect = 1.120e-44 Identity = 151/414 (36.47%), Postives = 157/414 (37.92%), Query Frame = 1
Query: 1 SMSNANVELFQGYPDGHPRDVFITGTTTEVDLAVAMVDEVIAAGTASDNXXXXXXXXX-----APPFTGGPVLVGTPSVASXXXXXXXXXXXXXXXXXXXXXXXXITHNFGDLGGLGNGXXXXXXXXXXXXXXNGHPASFSSNSPXXXXATQMAIDNLHKXXXXXXXXXXXXXXXXXXXXXXXXXPAGMMGAHAEYLAQQEALARQHQIQSPMLTVDWQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNSVEELLAKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIKIPFGPQKKIQKAIREATANMQGAASAANGAAA--------------------------TEDEPAAADLCAICMELPIEVTFVPCGHFICCVKCGNR 1149
SMSNANVELFQGYPDGHPRDVFITGT EVDLA +VDEVIA+GTASD+ XXXXXXX A F GPVL PS A +ELLAKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIKIPFGPQKKIQKAIREATANM+ AA+ TEDEP AADLCAICME PIEVTFV CGHFICCV CGNR
Sbjct: 325 SMSNANVELFQGYPDGHPRDVFITGTADEVDLAATLVDEVIASGTASDSTAXXXXXXXXGIGRALSFASGPVLGFNPSSALS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------QELLAKAGQMHLLPNFLEQEFDVNAIVLMEEQDFDEIKIPFGPQKKIQKAIREATANMERAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEDEPRAADLCAICMENPIEVTFVGCGHFICCVTCGNR 540
BLAST of mRNA_E-fasciculatus_F_contig12225.1728.1 vs. uniprot
Match: A0A6H5KMM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMM6_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 2.560e-16 Identity = 43/49 (87.76%), Postives = 45/49 (91.84%), Query Frame = 1
Query: 1 SMSNANVELFQGYPDGHPRDVFITGTTTEVDLAVAMVDEVIAAGTASDN 147
SMSNANVELFQGYPDGHPRDVFITGT EVDLA +VDEVIA+GTASDN
Sbjct: 759 SMSNANVELFQGYPDGHPRDVFITGTAEEVDLAATLVDEVIASGTASDN 807
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 173.3 |
| Seed ortholog evalue | 2.3e-40 |
| Seed eggNOG ortholog | 2880.D8LI19 |
| EggNOG free text desc. | K homology RNA-binding domain |
| EggNOG OGs | 2E9NA@1,2SFZF@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1224 |
| Cds size | 1221 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12225.1728.1 >prot_E-fasciculatus_F_contig12225.1728.1 ID=prot_E-fasciculatus_F_contig12225.1728.1|Name=mRNA_E-fasciculatus_F_contig12225.1728.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=407bp
MSNANVELFQGYPDGHPRDVFITGTTTEVDLAVAMVDEVIAAGTASDNTA
AAAAAGGAPPFTGGPVLVGTPSVASVGTPSVASVGTPSVASVGTPSVSSI
THNFGDLGGLGNGGGAAAAAAAAAAGMNGHPASFSSNSPASAAATQMAID
NLHKPPPPPPPPGMGGPPAGGAAAQPHHHPAGMMGAHAEYLAQQEALARQ
HQIQSPMLTVDWQQQQQQQQLQQQLQQQQQQQQQQQPQPQPQKGAAPAAA
AAAPAAASPATAAAPPPPPPFNSVEELLAKAGQMHLLPNFLEQEFDVNAI
VLMEEQDFDEIKIPFGPQKKIQKAIREATANMQGAASAANGAAATEDEPA
AADLCAICMELPIEVTFVPCGHFICCVKCGNRQVGSPCPLPQCRIMVERS
VQPYTG* back to topmRNA from alignment at E-fasciculatus_F_contig12225:241..4033+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12225.1728.1 ID=mRNA_E-fasciculatus_F_contig12225.1728.1|Name=mRNA_E-fasciculatus_F_contig12225.1728.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3793bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12225:241..4033+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCGATGAGCAACGCGAACGTGGAGCTGTTCCAGGGTTACCCCGACGGTCA
TCCCCGCGACGTGTTTATCACGGGCACTACCACGGAGGTGGATTTAGCCG
TGGCTATGGTGGACGAGGTGAGACGAAACAGACACACACACGGAGAGAGA
GGGGGAGAGAGAGAGAGAGAGCACACAAACAGAGAGCGACAGAGAGGGAG
AGAGAGAGCAAGCGGATCCACAACGCGTATGTGTTGTTTGTTGTTCGTCC
CCCCGCCTCTTGCACAAGCCATCAATGGTATCATGTTTTTTTTGTTGTGT
GTGTTCATAATGCACACCCACACTGCTGTTCCGCGTGTCTCGCCGTAGGT
TGGTGTGTTATCAAAGTCGCAAGAAATAAAACCATCTCAACAAATCTTCC
GTACGCCACACTTGGTACGATGAAGTATTGTAGTTGGCGAACGACGGCGT
GTCTCTGAGCTTGTCTGAGAAAGGATGCAGCGATGCCGGCATGCTGGGGT
GGAGAGCTCCGCACTCCGCCACTCACAGCAGTAGTGGACACAACGAATCA
GTGAGTACACGTAGTTCCTGCCTTCTCTCTGTTGTCTGTTTTTGTTCGCA
CTCGTCGCTCGAAGAAGGTGCACTGCACGCGTTGACGCGACACCAACAGC
AATGCCTTCTTATTCTTCCCTTCCCGTGATTGGTTCCTGTCCGCCAATCG
CGTTCGACGTCATGATGCTTTGCTTGAACAGGTGATCGCTGCCGGAACCG
CTTCGGACAATACCGCCGCCGCCGCCGCCGCCGGCGGTGCGCCTCCTTTC
ACCGGCGGCCCCGTTCTTGGTTTCAACCCTGCCCTCTCCCTCTCACAGGC
GAGAATTTCCTCCTGGCTTGTTGCCGTGTTGCCGTCCGTCCTAGATGTAG
TTCACCACTTGAGAATTTAGTAGTTGAGAACTTCAGCGAAAAAAAAATCC
AAAGTCGGCCTCTAGAGAACGTTAGAACAGGTTCTCAGTCAGAAAGCGTA
CATTGTACACTAAAACCTATATAAATAGTCGCCGTTGTGGTACTGCCGTG
CCCCTTGAGACTAGGTAAGATGTTTACCAGACTCGGCCAAAAGAAGAGAA
AAGGTGCTGTGCTTCCGTGTGGCGCGTTTGTGGTACCTTCTTGTTGCTCG
ACCCTTTTTAGTTTTTTTTCACAACAAACCAATGTGAGACGAGTGTCTCC
AGGTTCGCGTGTGACAAAGCTCCTCTCGTGATGTGTGGTGTGTGAACACA
CCTGTTCAACCTCTTGTGGAGAGGCTGACTTGTACGGATGAGTGGTGTTG
CACCAAGGTTCAGTGTCCACTGAATCTATTCTGTCAACACACCGAAGGTA
GATCTCCGACGGGTCATCTGACATCACAATCTACGACATTCTGAGGTGGC
ATTCACACCAAGTTCATTTGTTTCCCTCCAAAAGTGAGAGTTTAAGTGTT
TTATAGGGCGTTCCCCTGTCTTATTTATCTCCGACCCTCGTTGTTCTCTC
ATTTTTTTTGTCACGATGTCTTGTATCTCAAGTTTTCAAGAATGACCCCC
TGAAAACATAAAAAATACACGGGGACAACAAAGAGAGTTGGAAGTTTTCA
CCAAAACTAAATTTATAATTTTGTGCCCCCTCGTTTGCATACTCGCAACA
AACGCTGACATGACGCGACGCGACGCGACCAATAAAAAAACAGGGCTCAT
CCCCCCCGCCATCAGTTGGCACTCCCTCCGTCGCCTCCGTGGGCACTCCT
TCCGTCGCCTCCGTGGGCACTCCTTCCGTCGCCTCCGTGGGGACGCCGTC
GGTCAGTTCCATCACGCACAACTTTGGCGACCTTGGCGGTCTCGGAAACG
GAGGAGGAGCAGCAGCGGCGGCGGCGGCAGCGGCAGCCGGCATGAACGGT
CACCCGGCCTCCTTCTCCTCCAACTCCCCGGCCTCGGCGGCAGCCACGCA
GATGGCAATCGACAACCTCCACAAGCCGCCTCCGCCGCCTCCGCCGCCTG
GTATGGGGGGCCCCCCGGCGGGGGGGGCGGCTGCGCAGCCCCACCACCAT
CCGGCGGGCATGATGGGGGCACACGCGGAGTACTTGGCGCAGCAGGAGGC
GCTGGCGCGGCAGCACCAGATTCAGTCCCCGATGCTAACGGTTGACTGGC
AGCAGCAACAGCAGCAGCAGCAGCTACAGCAGCAGCTACAGCAGCAGCAA
CAACAGCAGCAGCAGCAGCAGCCGCAGCCGCAGCCGCAAAAAGGTGCTGC
TCCGGCCGCTGCTGCCGCGGCCCCGGCGGCGGCTTCTCCTGCAACAGCGG
CGGCCCCGCCCCCTCCCCCGCCGTTCAACAGCGTGGAGGAGCTGCTCGCG
AAGGCCGGCCAGATGCACCTCCTGCCTAACTTCCTGGAGCAGGAGTTCGA
CGTGAACGCGATCGTGCTGATGGAGGAACAGGACTTCGACGAGATCAAGG
TGCAGGGTATTGTACAGCAGCATGAAGTTTCGTCGCTTGTGTGTTGCTTT
TGTTACTACTGTAGCGTCGACCGCGCTACATACCCGGCGGACGAATGAGA
AGAATTCAGTCTCAGCGCCGACCCGAAAATAGAGATTGCTTCCTGAGGCC
ATGATCTGGGACCCCGTGTGTGTGTGCACACCACGTGTCTTGGCGCTGTG
CTAGCGTGCGTTGCCGCAGCAGAGAAAAGGAGGTATTGGTGTGCGCATAT
GATGTGTGTGTATGATGACGTCATCACACAAGACAGACGTGCTACGCTAC
ATGGCTCGCAGCTGTGTGTGTACCTCCTATTGTCCCTCAGTGGTTCCTCC
CCTGTCAGCTTCAGGTATTTTGGCATGCTGCTTGTTTCGAGATGGGTGGG
GATGGTAGTCTTGGCATTGACTGCTGTGTTGCGCAGTGCGAACAGTGTAA
AATCGACCCCTCTCTCTCTCTCCCTTGACCCCGGTTTCTGTCTCTGACCC
CCCTCCCCAAACACAGATTCCTTTTGGCCCCCAGAAGAAGATCCAGAAAG
CCATCCGAGAGGCTACCGCGAACATGCAAGGAGCCGCCTCGGCTGCCAAC
GGGGCTGCCGCGACCGAGGACGAGCCGGCGGCGGCTGACCTATGCGCCAT
CTGCATGGAGCTCCCGATCGAGGTGAGGAAATCATCTTCTCGAGAAAGAG
TCTGGAGATGGCGTTTTTCTGCGGAGCGGAGGGGAGTGGAGGGGAGATGC
ACGCTGCTGGTGTTGATGCTTATCCCCCCGCAACGCCTCTCCCCCTTCTC
GCCCCACCCTTTTTTCAATTGGACCGCACGATGGTGGCTCTTTTTGTCTC
GAGTGGCGGGATTGCGTACGCTTTTCCGGACGCACGCAGTCGATCGCTTG
ATGAAGAGGCTGATGTTTCTACTGGACTGGTGCTGTACATTGCAGTGACA
AGAATCATCATGTCATATTTTTTTCTTGTTATGTACGGCCGGGATGTATC
CACCACACAAGCCGGCGGACGGTTCTCAACGCTGCGTGCCGCAACGTGCG
GCATGTCGTAAGCTCGATAGCTTGTCATTTTGCTTCTTTTTCGCTGCTCG
CCGACGATGACAGCAAGGCTGTGATTCATTCCTCCCTACCCGACTTTCGG
CTCAATTTTTTTCCTTTTTTTTGCACCCATCGCCACCGGTGGGGTACCGA
CTGCTGCATCACAGGTGACCTTCGTGCCATGCGGACACTTCATTTGCTGC
GTGAAGTGCGGCAACAGGCAGGTCGGATCACCGTGCCCACTCCCCCAGTG
CCGGATCATGGTAGAGCGCTCGGTGCAGCCCTACACCGGGTAG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12225:241..4033+ >mRNA_E-fasciculatus_F_contig12225.1728.1 ID=mRNA_E-fasciculatus_F_contig12225.1728.1|Name=mRNA_E-fasciculatus_F_contig12225.1728.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2442bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12225:241..4033+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCAACGCGAACGTGGAGCTGTTCCAGGGTTACCCCGACGGTCATCC
CCGCGACGTGTTTATCACGGGCACTACCACGGAGGTGGATTTAGCCGTGG
CTATGGTGGACGAGATGAGCAACGCGAACGTGGAGCTGTTCCAGGGTTAC
CCCGACGGTCATCCCCGCGACGTGTTTATCACGGGCACTACCACGGAGGT
GGATTTAGCCGTGGCTATGGTGGACGAGGTGATCGCTGCCGGAACCGCTT
CGGACAATACCGCCGCCGCCGCCGCCGCCGGCGGTGCGCCTCCTTTCACC
GGCGGCCCCGTTCTTGGTGATCGCTGCCGGAACCGCTTCGGACAATACCG
CCGCCGCCGCCGCCGCCGGCGGTGCGCCTCCTTTCACCGGCGGCCCCGTT
CTTGTTGGCACTCCCTCCGTCGCCTCCGTGGGCACTCCTTCCGTCGCCTC
CGTGGGCACTCCTTCCGTCGCCTCCGTGGGGACGCCGTCGGTCAGTTCCA
TCACGCACAACTTTGGCGACCTTGGCGGTCTCGGAAACGGAGGAGGAGCA
GCAGCGGCGGCGGCGGCAGCGGCAGCCGGCATGAACGGTCACCCGGCCTC
CTTCTCCTCCAACTCCCCGGCCTCGGCGGCAGCCACGCAGATGGCAATCG
ACAACCTCCACAAGCCGCCTCCGCCGCCTCCGCCGCCTGGTATGGGGGGC
CCCCCGGCGGGGGGGGCGGCTGCGCAGCCCCACCACCATCCGGCGGGCAT
GATGGGGGCACACGCGGAGTACTTGGCGCAGCAGGAGGCGCTGGCGCGGC
AGCACCAGATTCAGTCCCCGATGCTAACGGTTGACTGGCAGCAGCAACAG
CAGCAGCAGCAGCTACAGCAGCAGCTACAGCAGCAGCAACAACAGCAGCA
GCAGCAGCAGCCGCAGCCGCAGCCGCAAAAAGGTGCTGCTCCGGCCGCTG
CTGCCGCGGCCCCGGCGGCGGCTTCTCCTGCAACAGCGGCGGCCCCGCCC
CCTCCCCCGCCGTTCAACAGCGTGGAGGAGCTGCTCGCGAAGGCCGGCCA
GATGCACCTCCTGCCTAACTTCCTGGAGCAGGAGTTCGACGTGAACGCGA
TCGTGCTGATGGAGGAACAGGACTTCGACGAGATCAAGTTGGCACTCCCT
CCGTCGCCTCCGTGGGCACTCCTTCCGTCGCCTCCGTGGGCACTCCTTCC
GTCGCCTCCGTGGGGACGCCGTCGGTCAGTTCCATCACGCACAACTTTGG
CGACCTTGGCGGTCTCGGAAACGGAGGAGGAGCAGCAGCGGCGGCGGCGG
CAGCGGCAGCCGGCATGAACGGTCACCCGGCCTCCTTCTCCTCCAACTCC
CCGGCCTCGGCGGCAGCCACGCAGATGGCAATCGACAACCTCCACAAGCC
GCCTCCGCCGCCTCCGCCGCCTGGTATGGGGGGCCCCCCGGCGGGGGGGG
CGGCTGCGCAGCCCCACCACCATCCGGCGGGCATGATGGGGGCACACGCG
GAGTACTTGGCGCAGCAGGAGGCGCTGGCGCGGCAGCACCAGATTCAGTC
CCCGATGCTAACGGTTGACTGGCAGCAGCAACAGCAGCAGCAGCAGCTAC
AGCAGCAGCTACAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCCGCAG
CCGCAGCCGCAAAAAGGTGCTGCTCCGGCCGCTGCTGCCGCGGCCCCGGC
GGCGGCTTCTCCTGCAACAGCGGCGGCCCCGCCCCCTCCCCCGCCGTTCA
ACAGCGTGGAGGAGCTGCTCGCGAAGGCCGGCCAGATGCACCTCCTGCCT
AACTTCCTGGAGCAGGAGTTCGACGTGAACGCGATCGTGCTGATGGAGGA
ACAGGACTTCGACGAGATCAAGATTCCTTTTGGCCCCCAGAAGAAGATCC
AGAAAGCCATCCGAGAGGCTACCGCGAACATGCAAGGAGCCGCCTCGGCT
GCCAACGGGGCTGCCGCGACCGAGGACGAGCCGGCGGCGGCTGACCTATG
CGCCATCTGCATGGAGCTCCCGATCGAGATTCCTTTTGGCCCCCAGAAGA
AGATCCAGAAAGCCATCCGAGAGGCTACCGCGAACATGCAAGGAGCCGCC
TCGGCTGCCAACGGGGCTGCCGCGACCGAGGACGAGCCGGCGGCGGCTGA
CCTATGCGCCATCTGCATGGAGCTCCCGATCGAGGTGACCTTCGTGCCAT
GCGGACACTTCATTTGCTGCGTGAAGTGCGGCAACAGGCAGGTCGGATCA
CCGTGCCCACTCCCCCAGTGCCGGATCATGGTAGAGCGCTCGGTGCAGCC
CTACACCGGGTAGGTGACCTTCGTGCCATGCGGACACTTCATTTGCTGCG
TGAAGTGCGGCAACAGGCAGGTCGGATCACCGTGCCCACTCCCCCAGTGC
CGGATCATGGTAGAGCGCTCGGTGCAGCCCTACACCGGGTAG back to top
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