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Homology
BLAST of mRNA_E-fasciculatus_F_contig12223.1727.1 vs. uniprot
Match: A0A6H5K5G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G3_9PHAE) HSP 1 Score: 683 bits (1763), Expect = 3.730e-235 Identity = 399/450 (88.67%), Postives = 406/450 (90.22%), Query Frame = 1
Query: 22 VEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQASGNGRFVSVKSSSASRRKSAPLPQLPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSTPGLMPWRNGDPPVAMPTVPGIHGRAPPXXXXXXGLPGHGQHEALTATGASPGAPFGKPSPLENGNGVGFVGPPS-GFNNGGAIIRAAMSMLPPGGMPTPSHDPNDRSQQQQXXXXXXXXXXXXXXXXQ-IPFVSQAPGVAN 1365
VEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKIL+SRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQA+GNGR +SVKSSSASRRKSAPLPQLP XXXXXXXXXXXXXXXXXX TSTPGLMPWRNGDPPVAMP PG+HGRAPP GLPGHGQH+ALTATGASPGAPFGKP PLENG+ VGFVGPPS GFNNGGAIIRAAMSMLPPGGMPTPSHDPNDR Q XXXXXXXXXXXXXXXX +PFVSQAPGVAN
Sbjct: 146 VEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILVSRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQANGNGRLLSVKSSSASRRKSAPLPQLPPLPXXXXXXXXXXXXXXXXXX-----------------------TSTPGLMPWRNGDPPVAMPAAPGVHGRAPPPP----GLPGHGQHDALTATGASPGAPFGKPPPLENGSSVGFVGPPSAGFNNGGAIIRAAMSMLPPGGMPTPSHDPNDRLQXXXXXXXXXXXXXXXXXXXXXMPFVSQAPGVAN 568
BLAST of mRNA_E-fasciculatus_F_contig12223.1727.1 vs. uniprot
Match: D7FRL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL6_ECTSI) HSP 1 Score: 460 bits (1183), Expect = 2.630e-157 Identity = 231/233 (99.14%), Postives = 231/233 (99.14%), Query Frame = 1
Query: 22 VEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVAANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML 720
VEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPA YVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGV ANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML
Sbjct: 149 VEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGKRIKAALLCKTLPPNDNPAVYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGKVSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVASGIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVTANAHKLLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSML 381
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| Model size | 1401 |
| Cds size | 1401 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12223.1727.1 >prot_E-fasciculatus_F_contig12223.1727.1 ID=prot_E-fasciculatus_F_contig12223.1727.1|Name=mRNA_E-fasciculatus_F_contig12223.1727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=467bp
MNACREKVEVEIMERMAEAWQAIEAKNARHDTSHKLHREKPMFCMDSLGK RIKAALLCKTLPPNDNPAEYVNGSSNAPSRNLVTAIKLAGYVVHCGTGGK VSAVDGDGREPPSKYTKEEFHNNVLPRAAENQPPRILNELRQLSCRLVAS GIAKGLLKQEDLPEIRKILISRFEDGGMHFLAGGDAAFARFIGVAANAHK LLERGDIDDFVAFHERVVKLVGMCRNRVRRAAYATSKSMLAQASGNGRFV SVKSSSASRRKSAPLPQLPPPPPSQQQQQQQQQQQQQQQQQQQQQQLHQQ QQQLLLQQQQQPPTSTPGLMPWRNGDPPVAMPTVPGIHGRAPPPPPPPPG LPGHGQHEALTATGASPGAPFGKPSPLENGNGVGFVGPPSGFNNGGAIIR AAMSMLPPGGMPTPSHDPNDRSQQQQQQQQQQPQQHQPQQHQQIPFVSQA PGVANGGAAAAAAAAAA back to topmRNA from alignment at E-fasciculatus_F_contig12223:883..4087+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig12223.1727.1 ID=mRNA_E-fasciculatus_F_contig12223.1727.1|Name=mRNA_E-fasciculatus_F_contig12223.1727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3205bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12223:883..4087+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGAATGCGTGCCGCGAAAAGGTGGAGGTGGAGATCATGGAGAGGATGGC
AGAGGCGTGGCAGGCCATCGAGGCCAAGAACGCTAGGCACGACACGTCCC
ACAAGCTTCACAGAGAGAAGCCAATGTTCTGCATGGACAGGTTTGTTTGT
TGTGTGAAATGCGTGCTTTTCGCGACAGTGCTGCCATTTGCTGTATTGTG
AGCGGGTTGAGCGTATACGTGTTGGTGTATGCTACTGCTGCTGCTGTTAC
CTCCTCCGCGCGCGAGGTAGTTGGCTACTAGCAGCAGGTTGTCCGGCACA
GCCGACGAGTCTGTTGACGACGTGAACACCTAAGACATGCCGTACAGGCT
ACTGTAGCCTGAAGAGCCGCATACAGTAGTACACTCACCGATTCCAGCGG
CATGACTGGGATCAAAAGTGGGCACATAATTTTACCATGACGCCGCCGCC
ACCTGCGGTGCAACGCACTGGTATGCCTGCATCACGCTTGCTGGGCGCCG
TGTGCTGCTGCCCCCGCCTGTAACCGTAGCCCCCCAACGAGCTTTGCCTC
AGTCCTCGACCGTTGATTCGCCCCGGTTTACCATCTGCGCCTCTCTCTGT
CGGGTACGACAACCTTTTGACAGCCTGGGGAAGCGGATAAAGGCGGCGCT
TCTTTGCAAGACCCTCCCGCCGAACGACAACCCGGCCGAGTACGTGAACG
GCTCCAGCAACGCCCCGAGCCGCAACCTCGTGACGGCCATCAAGCTGGCC
GGCTACGTGGTGCACTGCGGGACGGGGGGCAAGGTGTCGGCGGTGGACGG
TGATGGCCGCGAGGTGAAAGCACATGAGAGGGATGACTTTCTCGAAACAT
GCGGCAGTGCAGCAGTCTTTTGTTTCTCGCTCTCTTGACGACGCATCTCG
TCTCACGTTCCAAGCTTTCGTTAGGTCCTTCAATTTGCGTCGCTGTTGCT
TCTCGGCGACGGCGGTGTTTCGATGCGCTTCGGGAGTTCACGAAATGGCA
ATGGCGATGCACCCAAGGTTGCGCTGGCTTTGCACAGCTCTGTGTTCGAG
TTTTGTGCATGATAGCTTCCTCCCCCCGCACCTGCGGCTTAACCTCTACG
CCGTGTCTTGCTATGCCGGTGCCTTCGTGTACCACGGGCTCTTGTCTTTG
GCAGCCCCCGTCCAAGTACACGAAGGAAGAGTTCCACAACAACGTCTTGC
CGAGGGCAGCGGAGAACCAGCCCCCACGCATCTTGAACGAGCTGAGGCAG
CTGTCGTGCCGCCTCGTGGCGAGCGGCATCGCCAAGGGCCTGCTCAAGCA
GGAGGATCTGCCGGAGATCCGCAAGATCCTCATCAGCCGCTTTGAGGTGA
GTCTCTCGGTGCTGCTGCTGCTGCTGCTGCTAGTGCTAATGCTGATGCTG
CTGCTGAGGTGCTTGGGGGTTCTGGCTGTTGTTTTCCAGCTGTTTCTGCG
GCTGTGGCCTCTGGCTGTTGTTTTCCAGCTGCTGCTCGTACACGAGAGCG
TGCGGTGTTAATTTAGCCGCCGTTGTCTTGGAGCACGGGCGCAGTACCGC
AAGCAGCGCTTGCCGTGCGTGCAATGCCGTGCAGCACTGCATGCCATGCC
ATGCCGACGTTTTTCGTTTTATGCCCCCGTGACAAGACTTTATCTATGGG
TGTTTTAGCTGAAAAGTGGTCTAGTTGGTGCAATGCCACACAACGGTGCG
GTACGCCATGCCGAGCGCGCATTGTTTTGTGTAGTTGCGATGATGCCAAG
CGCTGCCAGCCTTGGTGCAGGTCATCACCACAATATTCATTCCTCTTCAT
CTTCATGGAAGGAAAGCTTTTTCCCCGTGTAGTCTAAGCCGCTTATCTGA
AGCCCCACGAGCTACATTGCAGGCAGCAGCGCCAGCGGCACACGGTTGTT
TCCATGTTCCGCTTGCGGGTGCAACGCGGGTGCTTACCTCGCTCGATGGG
ACGTGGTTTTTTACGTGTCTTTTTGTTGTTTTTTTGCCATGGGGATGCGT
AGGACGGCGGGATGCACTTCCTGGCCGGAGGCGACGCAGCTTTCGCGCGA
TTCATCGGGGTGGCGGCCAACGCTCACAAGCTGCTGGAGCGGGGCGACAT
CGACGACTTCGTGGCCTTCCACGAGCGGGTGGTGAAGCTGGTGGGCATGT
GTCGCAACAGGGTGCGCCGCGCTGCATATGCAACGTCCAAGAGCATGCTG
GTGAGTTGTTGTTCGCCGGGCGTACCCGGCCCGTTCTTGCTGTCTCGGTT
CTGTTTTTGGAGGTACAACCGCCTGCCTCGGGCACCTGGTGCTGCCGTAG
GGATCGGACATACTGTGTCAAGGGCACGGGCGTGGAAACTCGCCCTTGTG
GTGGTAGCGTTCCGTGATGGACTACTGTTCCTTTCCGATGAATATTTTTT
TCGCGCCAACATGCCGCATGTTGTCCGCGTGTCCATGACGAGCAGGCGCA
GGCAAGCTTCCTTCCCGATGAATATTTTTTCGCGCCAACATGTCGCATGT
TGTCCGCGTGTCCATGACGAGCAGGCGCAGGCAAGCGGCAACGGCCGCTT
CGTCTCCGTCAAGTCCTCAAGCGCGTCTCGCCGCAAGTCCGCGCCGCTGC
CGCAACTGCCGCCCCCGCCGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCATCA
GCAACAGCAGCAGCTGCTGCTACAGCAGCAACAACAACCGCCAACGTCGA
CACCGGGCTTGATGCCATGGCGAAACGGAGACCCACCAGTGGCGATGCCC
ACCGTTCCGGGGATACACGGCCGAGCACCACCACCACCACCACCACCACC
AGGCCTCCCTGGCCACGGGCAGCACGAGGCCCTCACCGCTACCGGCGCAT
CCCCCGGAGCCCCCTTCGGGAAGCCGTCGCCGCTGGAGAACGGGAACGGC
GTGGGTTTCGTCGGGCCGCCTTCTGGCTTCAACAACGGCGGCGCGATCAT
CCGCGCCGCCATGTCGATGCTTCCCCCCGGCGGCATGCCGACGCCTTCGC
ACGACCCGAACGACCGCTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CCGCAACAGCATCAGCCGCAACAGCACCAGCAGATACCGTTTGTCTCGCA
AGCCCCGGGCGTGGCGAACGGCGGTGCCGCTGCTGCCGCCGCCGCCGCCG
CCGCC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig12223:883..4087+ >mRNA_E-fasciculatus_F_contig12223.1727.1 ID=mRNA_E-fasciculatus_F_contig12223.1727.1|Name=mRNA_E-fasciculatus_F_contig12223.1727.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2802bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12223:883..4087+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) ATGAATGCGTGCCGCGAAAAGGTGGAGGTGGAGATCATGGAGAGGATGGC AGAGGCGTGGCAGGCCATCGAGGCCAAGAACGCTAGGCACGACACGTCCC ACAAGCTTCACAGAGAGAAGCCAATGTTCTGCATGGACAGATGAATGCGT GCCGCGAAAAGGTGGAGGTGGAGATCATGGAGAGGATGGCAGAGGCGTGG CAGGCCATCGAGGCCAAGAACGCTAGGCACGACACGTCCCACAAGCTTCA CAGAGAGAAGCCAATGTTCTGCATGGACAGCCTGGGGAAGCGGATAAAGG CGGCGCTTCTTTGCAAGACCCTCCCGCCGAACGACAACCCGGCCGAGTAC GTGAACGGCTCCAGCAACGCCCCGAGCCGCAACCTCGTGACGGCCATCAA GCTGGCCGGCTACGTGGTGCACTGCGGGACGGGGGGCAAGGTGTCGGCGG TGGACGGTGATGGCCGCGAGCCTGGGGAAGCGGATAAAGGCGGCGCTTCT TTGCAAGACCCTCCCGCCGAACGACAACCCGGCCGAGTACGTGAACGGCT CCAGCAACGCCCCGAGCCGCAACCTCGTGACGGCCATCAAGCTGGCCGGC TACGTGGTGCACTGCGGGACGGGGGGCAAGGTGTCGGCGGTGGACGGTGA TGGCCGCGAGCCCCCGTCCAAGTACACGAAGGAAGAGTTCCACAACAACG TCTTGCCGAGGGCAGCGGAGAACCAGCCCCCACGCATCTTGAACGAGCTG AGGCAGCTGTCGTGCCGCCTCGTGGCGAGCGGCATCGCCAAGGGCCTGCT CAAGCAGGAGGATCTGCCGGAGATCCGCAAGATCCTCATCAGCCGCTTTG AGCCCCCGTCCAAGTACACGAAGGAAGAGTTCCACAACAACGTCTTGCCG AGGGCAGCGGAGAACCAGCCCCCACGCATCTTGAACGAGCTGAGGCAGCT GTCGTGCCGCCTCGTGGCGAGCGGCATCGCCAAGGGCCTGCTCAAGCAGG AGGATCTGCCGGAGATCCGCAAGATCCTCATCAGCCGCTTTGAGGACGGC GGGATGCACTTCCTGGCCGGAGGCGACGCAGCTTTCGCGCGATTCATCGG GGTGGCGGCCAACGCTCACAAGCTGCTGGAGCGGGGCGACATCGACGACT TCGTGGCCTTCCACGAGCGGGTGGTGAAGCTGGTGGGCATGTGTCGCAAC AGGGTGCGCCGCGCTGCATATGCAACGTCCAAGAGCATGCTGGACGGCGG GATGCACTTCCTGGCCGGAGGCGACGCAGCTTTCGCGCGATTCATCGGGG TGGCGGCCAACGCTCACAAGCTGCTGGAGCGGGGCGACATCGACGACTTC GTGGCCTTCCACGAGCGGGTGGTGAAGCTGGTGGGCATGTGTCGCAACAG GGTGCGCCGCGCTGCATATGCAACGTCCAAGAGCATGCTGGCGCAGGCAA GCGGCAACGGCCGCTTCGTCTCCGTCAAGTCCTCAAGCGCGTCTCGCCGC AAGTCCGCGCCGCTGCCGCAACTGCCGCCCCCGCCGCCGTCGCAGCAGCA GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC AGCAGCAACTGCATCAGCAACAGCAGCAGCTGCTGCTACAGCAGCAACAA CAACCGCCAACGTCGACACCGGGCTTGATGCCATGGCGAAACGGAGACCC ACCAGTGGCGATGCCCACCGTTCCGGGGATACACGGCCGAGCACCACCAC CACCACCACCACCACCAGGCCTCCCTGGCCACGGGCAGCACGAGGCCCTC ACCGCTACCGGCGCATCCCCCGGAGCCCCCTTCGGGAAGCCGTCGCCGCT GGAGAACGGGAACGGCGTGGGTTTCGTCGGGCCGCCTTCTGGCTTCAACA ACGGCGGCGCGATCATCCGCGCCGCCATGTCGATGCTTCCCCCCGGCGGC ATGCCGACGCCTTCGCACGACCCGAACGACCGCTCGCAGCAGCAGCAGCA GCAGCAGCAGCAGCAGCCGCAACAGCATCAGCCGCAACAGCACCAGCAGA TACCGTTTGTCTCGCAAGCCCCGGGCGTGGCGAACGGCGGTGCCGCTGCT GCCGCCGCCGCCGCCGCCGCCGCGCAGGCAAGCGGCAACGGCCGCTTCGT CTCCGTCAAGTCCTCAAGCGCGTCTCGCCGCAAGTCCGCGCCGCTGCCGC AACTGCCGCCCCCGCCGCCGTCGCAGCAGCAGCAGCAGCAGCAGCAGCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACTGCATCAGCA ACAGCAGCAGCTGCTGCTACAGCAGCAACAACAACCGCCAACGTCGACAC CGGGCTTGATGCCATGGCGAAACGGAGACCCACCAGTGGCGATGCCCACC GTTCCGGGGATACACGGCCGAGCACCACCACCACCACCACCACCACCAGG CCTCCCTGGCCACGGGCAGCACGAGGCCCTCACCGCTACCGGCGCATCCC CCGGAGCCCCCTTCGGGAAGCCGTCGCCGCTGGAGAACGGGAACGGCGTG GGTTTCGTCGGGCCGCCTTCTGGCTTCAACAACGGCGGCGCGATCATCCG CGCCGCCATGTCGATGCTTCCCCCCGGCGGCATGCCGACGCCTTCGCACG ACCCGAACGACCGCTCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCG CAACAGCATCAGCCGCAACAGCACCAGCAGATACCGTTTGTCTCGCAAGC CCCGGGCGTGGCGAACGGCGGTGCCGCTGCTGCCGCCGCCGCCGCCGCCG CC back to top
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