mRNA_E-fasciculatus_F_contig12220.1726.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: A0A6H5KVC1_9PHAE (EngB-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVC1_9PHAE) HSP 1 Score: 251 bits (641), Expect = 4.780e-81 Identity = 133/137 (97.08%), Postives = 135/137 (98.54%), Query Frame = 1
Query: 1 MMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSRRQTNLSIMTLSALKGAGMVELQKELASLDPKPVVAAAAAALPRDGESEGGDGR 411
MMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSRRQTNLS+MTLSALKGAGMVELQKELASLDPKPV AAAAAA+PRDGESEGGD R
Sbjct: 221 MMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSRRQTNLSVMTLSALKGAGMVELQKELASLDPKPV-AAAAAAVPRDGESEGGDDR 356
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: A0A835ZG72_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG72_9STRA) HSP 1 Score: 123 bits (308), Expect = 3.430e-30 Identity = 66/120 (55.00%), Postives = 88/120 (73.33%), Query Frame = 1
Query: 1 MMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGP-----SPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSRRQTNLSIMTLSALKGAGMVELQKELASLDPK 345
++ YLRGRGA LKRV +LLDARHGFK D+ FL LY KG +PLG Y+PPK+Q++LTKCDLV+R +LARRV VR +L +V+ R+T L ++ +SAL+ + +LQKELA L P+
Sbjct: 243 LLQYLRGRGALLKRVCMLLDARHGFKANDVAFLQRLYARKGQDGLGRNPLGPYKPPKLQVILTKCDLVQRRELARRVSQVRARLSDVTPRETYLPVLMVSALRDQAVEDLQKELAGLVPQ 362
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: A0A7S2GV24_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GV24_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.240e-25 Identity = 61/118 (51.69%), Postives = 82/118 (69.49%), Query Frame = 1
Query: 1 MMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKG--PSPLGKY---RPPKIQILLTKCDLVKRIDLARRVVFVRQQL-EEVSRRQTNLSIMTLSALKGAGMVELQKELASL 336
M+ YLR RG LKRV LLLDARHG K D +FL LLY+P+ P G++ PPK+Q++LTKCDLV R DL RR+ VR+++ +E+ R L + +SA +G G++ELQ+ELASL
Sbjct: 117 MLKYLRHRGPSLKRVCLLLDARHGLKVIDRQFLRLLYEPRPIVDPPPGEHVLWDPPKLQVILTKCDLVDRFDLVRRIQRVREEMSDELPSRAGRLQAIMVSAREGKGIMELQRELASL 234
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: A0A7S2RWQ0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RWQ0_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 1.900e-21 Identity = 64/130 (49.23%), Postives = 81/130 (62.31%), Query Frame = 1
Query: 10 YLRGRGAP-LKRVMLLLDARHGFKKADIEFL-GLLYDPKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSRRQ-TNLSIMTLSALKG------------AGMVELQKELASLDPKPVV 354
Y+ GRG LKRV+ LLDARHGFKK D EFL L +D K + L P IQ++LTKCDLV + DLARRVV V+QQL + RQ ++L +M +SA G G++ELQ+ELA L KP +
Sbjct: 4 YILGRGKKSLKRVLFLLDARHGFKKTDFEFLESLQHDLKARTNL-----PPIQLVLTKCDLVTQNDLARRVVQVKQQLSNILIRQPSSLPVMLVSAKAGLGFNNIRGNRARGGILELQRELAGLVRKPQI 128
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: A0A7S1VXG1_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1VXG1_9STRA) HSP 1 Score: 95.1 bits (235), Expect = 3.940e-20 Identity = 62/130 (47.69%), Postives = 79/130 (60.77%), Query Frame = 1
Query: 10 YLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDP------KGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEE-VSRRQTNLSIMTLSALKG------------AGMVELQKELASLDP 342
YL RG LKRV+LL+DARHG K AD EFL L + +G +P P IQI+LTKCDLV + DLARRVV VRQQL + + R ++L +M +SA G G++ELQ+ELA+L P
Sbjct: 390 YLLDRGKSLKRVLLLIDARHGMKNADFEFLSSLQESLKSTSKEGATPKNVRELPPIQIVLTKCDLVTQDDLARRVVQVRQQLSDNLLREPSSLPVMLVSAKAGLGYNNIRGGIARGGVLELQRELAALVP 519
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: K0SSQ4_THAOC (EngB-type G domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SSQ4_THAOC) HSP 1 Score: 91.3 bits (225), Expect = 7.970e-19 Identity = 59/125 (47.20%), Postives = 78/125 (62.40%), Query Frame = 1
Query: 34 LKRVMLLLDARHGFKKADIEFLGLLYD-------PKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEE-VSRRQTNLSIMTLSALKG------------AGMVELQKELASLDPKP 348
LKR++LLLDARHGFKK D EFL L D G + + + PP +QI+LTKCDLVK+ DLARRVV V++ L + + R ++L +M +SA G G++ELQ+ELASL P P
Sbjct: 336 LKRILLLLDARHGFKKTDFEFLTSLQDGLGTRIQESGGNKIRRELPP-LQIVLTKCDLVKQADLARRVVAVKRDLSDFLLREPSSLPVMLVSAKPGLGFNNVRGGKPLGGVLELQRELASLVPMP 459
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: A0A7S1ZZ98_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZZ98_TRICV) HSP 1 Score: 89.4 bits (220), Expect = 4.150e-18 Identity = 62/138 (44.93%), Postives = 81/138 (58.70%), Query Frame = 1
Query: 10 YLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDP------KGPSPLGK------YRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSRRQ-TNLSIMTLSALKGAG------------MVELQKELASLDPKP 348
YL RG LKR++LL+DARHGFK AD FL L + KG K + P IQI+LTKCDL K+ DLARRVV V++QL + +RQ ++L +M +SA G G M++LQ+ELA+L P P
Sbjct: 358 YLLRRGESLKRILLLIDARHGFKNADYAFLETLQNALKEGQKKGAHVSSKQQCGLEFDLPPIQIVLTKCDLCKQDDLARRVVQVKEQLSKSLKRQPSSLPVMLVSAKTGVGYNNIRRGKARGGMLQLQRELAALVPFP 495
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: A0A7S2KMU0_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KMU0_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 8.330e-18 Identity = 63/136 (46.32%), Postives = 80/136 (58.82%), Query Frame = 1
Query: 34 LKRVMLLLDARHGFKKADIEFLGLLYD----PKGPSPLGKYRP--------------PKIQILLTKCDLVKRIDLARRVVFVRQQLEE-VSRRQTNLSIMTLSA--------LKGA------GMVELQKELASLDP 342
LKR++LLLDARHGFK AD EFL L + G S P IQI+LTKCDLVK++DLARRVV VRQQL + ++R ++L +M +SA ++GA G++ELQKELASL P
Sbjct: 230 LKRILLLLDARHGFKLADFEFLEALQEGLKQQNGISSXXXXXXXXXXXXXXXXXXELPPIQIVLTKCDLVKQVDLARRVVVVRQQLSDALAREPSSLPVMLVSARAGLGFNNIRGAEQLPMGGVLELQKELASLVP 365
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: A0A7S2YB71_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YB71_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 1.400e-17 Identity = 63/134 (47.01%), Postives = 79/134 (58.96%), Query Frame = 1
Query: 1 MMAYLRGRG------APLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRP-------------PKIQILLTKCDLVKRIDLARRVVFVRQQLEE-VSRRQTNLSIMTLSA--LKGAGMVELQKELASL 336
M YL G G AP KR++LL+DARHG KKAD EFL + D + K P IQI+LTKCDLV +IDLARRVV VRQQL + ++R + L +M +S K G++ELQKEL+SL
Sbjct: 85 MRQYLTGGGTMAHGTAP-KRILLLIDARHGMKKADFEFLETIEDALRDTEREKNEKQQSNNQRKKRLDLPPIQIVLTKCDLVPQIDLARRVVQVRQQLSDALTREPSQLPVMFVSVNPTKLKGVLELQKELSSL 217
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Match: A0A1E7FSI8_9STRA (p-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FSI8_9STRA) HSP 1 Score: 84.0 bits (206), Expect = 6.420e-17 Identity = 53/107 (49.53%), Postives = 73/107 (68.22%), Query Frame = 1
Query: 34 LKRVMLLLDARHGFKKADIEFLGLLYD---PKGPSPLGKYRPPKIQILLTKCDLVKRIDLARRVVFVRQQLEEVSRRQTNL--SIMTLSALKGA-GMVELQKELASL 336
LKRV+LL+DARHG K+AD+ + L + PK P+ L P +QI+LTKCDLV + DLARRV+ VRQQL + RQ + ++ + ++G G++ELQKELASL
Sbjct: 156 LKRVLLLIDARHGMKQADVNIMVSLQNALSPKVPTEL-----PPLQIVLTKCDLVSQSDLARRVIQVRQQLSDCLIRQPKILPEMLVSAQMEGQLGVLELQKELASL 257 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12220.1726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12220.1726.1 >prot_E-fasciculatus_F_contig12220.1726.1 ID=prot_E-fasciculatus_F_contig12220.1726.1|Name=mRNA_E-fasciculatus_F_contig12220.1726.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=138bp MMAYLRGRGAPLKRVMLLLDARHGFKKADIEFLGLLYDPKGPSPLGKYRPback to top mRNA from alignment at E-fasciculatus_F_contig12220:2494..4089- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12220.1726.1 ID=mRNA_E-fasciculatus_F_contig12220.1726.1|Name=mRNA_E-fasciculatus_F_contig12220.1726.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1596bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12220:2494..4089- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12220:2494..4089- >mRNA_E-fasciculatus_F_contig12220.1726.1 ID=mRNA_E-fasciculatus_F_contig12220.1726.1|Name=mRNA_E-fasciculatus_F_contig12220.1726.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=828bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12220:2494..4089- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |