mRNA_E-fasciculatus_F_contig12220.1725.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12220.1725.1
Unique NamemRNA_E-fasciculatus_F_contig12220.1725.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: D7FRN0_ECTSI (UBC core domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FRN0_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 2.640e-40
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 195
            SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA
Sbjct:   97 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 161
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BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: A0A835YNI1_9STRA (Ubiquitin conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNI1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 5.980e-27
Identity = 48/63 (76.19%), Postives = 56/63 (88.89%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 189
            SILNE  GWRP+ITIKQML GI +LLDNPNP+ PAQSEAYQ+FVNN+AEY+RRV +EA+KN P
Sbjct:   96 SILNEDDGWRPAITIKQMLLGIQDLLDNPNPNSPAQSEAYQMFVNNRAEYNRRVRLEARKNIP 158
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BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: A0A6U0IJL9_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A6U0IJL9_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.340e-25
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPA 192
            SILNE +GWRP+ITIKQML GI +LLD+PNP+ PAQSEAYQLF+NNK EY RRV  EA+KN P+
Sbjct:   96 SILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYQLFMNNKPEYKRRVKAEARKNAPS 159
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BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: B8BY49_THAPS (Ubiquitin conjugating enzyme n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8BY49_THAPS)

HSP 1 Score: 100 bits (250), Expect = 1.380e-25
Identity = 46/64 (71.88%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPA 192
            SILNE +GWRP+IT+KQML GI +LLD PNP+ PAQSEAY LF+NNKAEY RRV  EA+KN P+
Sbjct:   97 SILNEEEGWRPAITVKQMLLGIQDLLDTPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTPS 160
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BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: A0A7S4RZR8_9STRA (Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID=49247 RepID=A0A7S4RZR8_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 8.290e-25
Identity = 45/63 (71.43%), Postives = 53/63 (84.13%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 189
            SILNE +GWRP+IT+KQ+L GI +LLD PNP+ PAQSEAY LF+NNKAEY RRV  EA+KN P
Sbjct:   99 SILNEEEGWRPAITVKQILLGIQDLLDEPNPNSPAQSEAYNLFINNKAEYKRRVKAEARKNTP 161
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BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: B7G0L5_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7G0L5_PHATC)

HSP 1 Score: 98.2 bits (243), Expect = 1.540e-24
Identity = 46/63 (73.02%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 189
            SILNE +GWRP+ITIKQ+L GI +LLD+PNPD PAQSEA  LF++NKAEY RRV IEA+KN P
Sbjct:   96 SILNEEEGWRPAITIKQVLTGIQDLLDDPNPDSPAQSEAINLFLSNKAEYKRRVKIEARKNQP 158
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BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: A0A7S1FY89_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FY89_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.800e-24
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 195
            SILNE +GWRP+IT+KQM+ GI +LLD+PNP+ PAQSEAY L++ NKAEY RRV +EAK+N P A
Sbjct:  102 SILNEEEGWRPAITLKQMVLGIQDLLDDPNPNSPAQSEAYNLYMRNKAEYSRRVRVEAKRNAPPA 166
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BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: A0A7S4HWQ1_9STRA (Hypothetical protein n=3 Tax=Eupodiscales TaxID=33838 RepID=A0A7S4HWQ1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 2.080e-24
Identity = 45/65 (69.23%), Postives = 56/65 (86.15%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 195
            SILNE +GWRP+ITIKQML GI +LLD+PNP+ PAQSEAY L++NN++EY RRV  EA+KN PA+
Sbjct:  135 SILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYNLYMNNRSEYKRRVKAEARKNTPAS 199
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BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: A0A448ZL65_9STRA (UBC core domain-containing protein n=2 Tax=Bacillariaceae TaxID=33852 RepID=A0A448ZL65_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.930e-24
Identity = 44/63 (69.84%), Postives = 54/63 (85.71%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPP 189
            SILNE +GWRP+IT+KQ+L GI +LLD+PNP+ PAQSEAYQLF++NK EY RRV  EA+KN P
Sbjct:   96 SILNEEEGWRPAITLKQVLIGIQDLLDDPNPNSPAQSEAYQLFIHNKTEYKRRVQAEARKNTP 158
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Match: A0A7S2PI22_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PI22_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 3.440e-24
Identity = 44/65 (67.69%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEYDRRVLIEAKKNPPAA 195
            SILNE +GWRP+ITIKQML GI +LLD+PNP+ PAQSEAY LF +NK+EY +RV  EA+KN P++
Sbjct:   60 SILNEEEGWRPAITIKQMLLGIQDLLDDPNPNSPAQSEAYNLFTSNKSEYRKRVKAEARKNTPSS 124
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12220.1725.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRN0_ECTSI2.640e-40100.00UBC core domain-containing protein n=2 Tax=Ectocar... [more]
A0A835YNI1_9STRA5.980e-2776.19Ubiquitin conjugating enzyme n=1 Tax=Tribonema min... [more]
A0A6U0IJL9_9STRA1.340e-2573.44Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
B8BY49_THAPS1.380e-2571.88Ubiquitin conjugating enzyme n=2 Tax=Thalassiosira... [more]
A0A7S4RZR8_9STRA8.290e-2571.43Hypothetical protein n=3 Tax=Lithodesmiaceae TaxID... [more]
B7G0L5_PHATC1.540e-2473.02Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1FY89_9STRA1.800e-2467.69Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S4HWQ1_9STRA2.080e-2469.23Hypothetical protein n=3 Tax=Eupodiscales TaxID=33... [more]
A0A448ZL65_9STRA2.930e-2469.84UBC core domain-containing protein n=2 Tax=Bacilla... [more]
A0A7S2PI22_9STRA3.440e-2467.69Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12220contigE-fasciculatus_F_contig12220:19..863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.3e-30
Seed eggNOG ortholog2880.D7FRN0
Preferred namehus5
KEGG koko:K10577
KEGG Pathwayko03013,ko04064,ko04120,ko05206,map03013,map04064,map04120,map05206
KEGG ModuleM00427
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000122,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000785,GO:0000790,GO:0000792,GO:0000793,GO:0000794,GO:0000795,GO:0000819,GO:0001101,GO:0002178,GO:0003006,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005720,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0006066,GO:0006355,GO:0006357,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006643,GO:0006644,GO:0006665,GO:0006667,GO:0006670,GO:0006672,GO:0006684,GO:0006686,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008610,GO:0008641,GO:0008654,GO:0009056,GO:0009057,GO:0009058,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010033,GO:0010154,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010558,GO:0010604,GO:0010605,GO:0010629,GO:0012505,GO:0016020,GO:0016043,GO:0016239,GO:0016241,GO:0016604,GO:0016605,GO:0016740,GO:0016874,GO:0016877,GO:0016925,GO:0017059,GO:0018193,GO:0018205,GO:0019219,GO:0019222,GO:0019538,GO:0019637,GO:0019751,GO:0019787,GO:0019789,GO:0019899,GO:0019904,GO:0019941,GO:0019948,GO:0022402,GO:0022414,GO:0030148,GO:0030163,GO:0031211,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0031984,GO:0032268,GO:0032270,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0033233,GO:0033235,GO:0033993,GO:0034311,GO:0034312,GO:0034641,GO:0035339,GO:0036211,GO:0042175,GO:0042221,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043603,GO:0043604,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044271,GO:0044281,GO:0044283,GO:0044388,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045892,GO:0045934,GO:0046165,GO:0046173,GO:0046467,GO:0046511,GO:0046512,GO:0046513,GO:0046519,GO:0046520,GO:0048285,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051173,GO:0051231,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051338,GO:0051347,GO:0051603,GO:0060255,GO:0061458,GO:0061650,GO:0061656,GO:0065007,GO:0065009,GO:0070013,GO:0070647,GO:0071535,GO:0071704,GO:0071840,GO:0080090,GO:0090407,GO:0097164,GO:0097305,GO:0098796,GO:0098813,GO:0098827,GO:0099086,GO:0140014,GO:0140096,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901615,GO:1901617,GO:1901700,GO:1902494,GO:1902679,GO:1902850,GO:1903047,GO:1903182,GO:1903320,GO:1903322,GO:1903506,GO:1903507,GO:1903755,GO:1904502,GO:1904504,GO:1905961,GO:1990234,GO:1990356,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0424@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019,ko04121
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-12_002440.1
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.9725187-CDS-E-fasciculatus_F_contig12220:18..1491622927730.9725187-CDS-E-fasciculatus_F_contig12220:18..149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12220 19..149 +
1695995669.9100323-CDS-E-fasciculatus_F_contig12220:18..1491695995669.9100323-CDS-E-fasciculatus_F_contig12220:18..149Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12220 19..149 +
1622927730.9902847-CDS-E-fasciculatus_F_contig12220:796..8631622927730.9902847-CDS-E-fasciculatus_F_contig12220:796..863Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12220 797..863 +
1695995669.9266636-CDS-E-fasciculatus_F_contig12220:796..8631695995669.9266636-CDS-E-fasciculatus_F_contig12220:796..863Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12220 797..863 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12220.1725.1prot_E-fasciculatus_F_contig12220.1725.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12220 19..863 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12220.1725.1

>prot_E-fasciculatus_F_contig12220.1725.1 ID=prot_E-fasciculatus_F_contig12220.1725.1|Name=mRNA_E-fasciculatus_F_contig12220.1725.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
SILNEGQGWRPSITIKQMLHGIFELLDNPNPDDPAQSEAYQLFVNNKAEY
DRRVLIEAKKNPPAA*
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mRNA from alignment at E-fasciculatus_F_contig12220:19..863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12220.1725.1 ID=mRNA_E-fasciculatus_F_contig12220.1725.1|Name=mRNA_E-fasciculatus_F_contig12220.1725.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=845bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12220:19..863+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCATCCTGAACGAGGGCCAGGGATGGAGACCAAGCATCACCATCAAGCA
GATGCTGCATGGGATCTTCGAGCTTTTGGACAATCCGAACCCCGACGACC
CTGCCCAATCAGAGGCCTACCAACTGTTTGTGTGAGTGACGCTGTGGCTA
TGCGAGAAGTCGGTCCTCTTTGCTATTACTTCTGGAGTACTAATGGTTGT
GCGTCGCCGGTATGATTGGCCTGCTATCCATTACTCTACAACCCACGCGC
GCGGCTTGTGCGGCCGCGGCTCCTGCTCTGTGCGGTTGTAACGGCCGTTT
CTTGTGTGCTTTCAACCGTAAGAAGACGCGTACGGACACAATGTCGCGCG
AGTTAACAATGAATAATCGTTGATGGAGTATTTTGCAGGCGTTGGTGTAC
TGAGTCGAATTCCGTGTTGATAGGCACTCGACACTCGATATCGATATCAA
GAGTTACCTCAATTGATCGCGACGTCGCCAGCCCCCACCCCATTTGCTTG
TCTTTTTGGCCAGTTGTGTGACAATCTCGTCACCAGACGACCGGCAGATA
CACGTAGTAACAGATATTTGACGACAGTTTTATGCCGGCGTGTGTGTTAT
GTTTTCGTCCCATCTGTTCTGGCGCCAGTCTCTTCCTGGTACATGTTAAG
CGTCAAAAAAAAATATCTCGGGCAGGATGTCCACGATGCAAACGAATATG
AACCTATTGTGATGTACCGAACTGATGTATACCTGCCGAAGGGACCCCTC
CAAACGCTACACAACGCAACACCTGCAGGAACAACAAAGCGGAGTACGAC
AGGAGGGTGCTCATCGAGGCCAAGAAGAATCCCCCCGCTGCATAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12220:19..863+

>mRNA_E-fasciculatus_F_contig12220.1725.1 ID=mRNA_E-fasciculatus_F_contig12220.1725.1|Name=mRNA_E-fasciculatus_F_contig12220.1725.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12220:19..863+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGCATCCTGAACGAGGGCCAGGGATGGAGACCAAGCATCACCATCAAGCA
GATGCTGCATGGGATCTTCGAGCTTTTGGACAATCCGAACCCCGACGACC
CTGCCCAATCAGAGGCCTACCAACTGTTTGTAGCATCCTGAACGAGGGCC
AGGGATGGAGACCAAGCATCACCATCAAGCAGATGCTGCATGGGATCTTC
GAGCTTTTGGACAATCCGAACCCCGACGACCCTGCCCAATCAGAGGCCTA
CCAACTGTTTGTGAACAACAAAGCGGAGTACGACAGGAGGGTGCTCATCG
AGGCCAAGAAGAATCCCCCCGCTGCATAGGAACAACAAAGCGGAGTACGA
CAGGAGGGTGCTCATCGAGGCCAAGAAGAATCCCCCCGCTGCATAG
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