mRNA_E-fasciculatus_F_contig12217.1721.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12217.1721.1
Unique NamemRNA_E-fasciculatus_F_contig12217.1721.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12217.1721.1 vs. uniprot
Match: A0A6H5KXZ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXZ2_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 1.770e-13
Identity = 99/145 (68.28%), Postives = 102/145 (70.34%), Query Frame = -2 
Query:    3 YRRVSGLVGRAVGLLTPGRPRAPPRLTSAAAEGGDLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADAIPSKAFFSPGVDQSREGLRRQTRRGGARAGAKANA 437
            YRRV+GLVGRAVGLLTPGRPRAPPR+ S AAE  DLEA           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   +   AFFSPGV Q REGLRRQTRRGGA  G K NA
Sbjct:   48 YRRVTGLVGRAVGLLTPGRPRAPPRIASTAAEDNDLEAAAGAAARGEESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPSSRHGGVDGGAN-----LTKAAFFSPGVGQRREGLRRQTRRGGAGVGTKGNA 187
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12217.1721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KXZ2_9PHAE1.770e-1368.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12217contigE-fasciculatus_F_contig12217:2499..2936 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_004790.1
Exons1
Model size438
Cds size438
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.4260716-CDS-E-fasciculatus_F_contig12217:2498..29361622927730.4260716-CDS-E-fasciculatus_F_contig12217:2498..2936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12217 2499..2936 +
1695995669.6794248-CDS-E-fasciculatus_F_contig12217:2498..29361695995669.6794248-CDS-E-fasciculatus_F_contig12217:2498..2936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12217 2499..2936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12217.1721.1prot_E-fasciculatus_F_contig12217.1721.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12217 2499..2936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12217.1721.1

>prot_E-fasciculatus_F_contig12217.1721.1 ID=prot_E-fasciculatus_F_contig12217.1721.1|Name=mRNA_E-fasciculatus_F_contig12217.1721.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=146bp
MALALAPALAPPLLVWRLSPSRLWSTPGLKNAFEGIASAPPPPTPPWREE
GEAAELARVAAAAPRPGVEATAAARTGGSAAAAAGVPSFPPSGSTAALSS
PLAAAPPPASKSPPSAAAEVRRGGARGLPGVKRPTARPTRPETLR*
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mRNA from alignment at E-fasciculatus_F_contig12217:2499..2936+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12217.1721.1 ID=mRNA_E-fasciculatus_F_contig12217.1721.1|Name=mRNA_E-fasciculatus_F_contig12217.1721.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=438bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12217:2499..2936+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGTTGGCCTTGGCACCCGCCCTGGCTCCCCCTCTCCTCGTCTGGCG
CCTGAGCCCTTCGCGACTCTGGTCCACTCCGGGGCTGAAGAACGCCTTCG
AGGGGATTGCATCAGCGCCGCCGCCGCCGACTCCGCCGTGGCGAGAAGAA
GGAGAAGCAGCAGAATTGGCGAGAGTGGCGGCGGCTGCACCGCGGCCGGG
AGTGGAGGCTACAGCAGCAGCGCGAACGGGCGGGTCCGCCGCTGCTGCTG
CCGGCGTCCCTTCATTCCCCCCCTCGGGCTCTACGGCCGCCCTTTCTTCT
CCGCTCGCCGCCGCTCCCCCCCCGGCTTCCAAATCGCCGCCTTCCGCCGC
GGCAGAGGTGAGGCGGGGAGGCGCTCGGGGTCTGCCCGGCGTCAAGAGAC
CCACCGCGCGTCCGACGAGGCCGGAGACCCTGCGGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12217:2499..2936+

>mRNA_E-fasciculatus_F_contig12217.1721.1 ID=mRNA_E-fasciculatus_F_contig12217.1721.1|Name=mRNA_E-fasciculatus_F_contig12217.1721.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12217:2499..2936+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGTTGGCCTTGGCACCCGCCCTGGCTCCCCCTCTCCTCGTCTGGCG
CCTGAGCCCTTCGCGACTCTGGTCCACTCCGGGGCTGAAGAACGCCTTCG
AGGGGATTGCATCAGCGCCGCCGCCGCCGACTCCGCCGTGGCGAGAAGAA
GGAGAAGCAGCAGAATTGGCGAGAGTGGCGGCGGCTGCACCGCGGCCGGG
AGTGGAGGCTACAGCAGCAGCGCGAACGGGCGGGTCCGCCGCTGCTGCTG
CCGGCGTCCCTTCATTCCCCCCCTCGGGCTCTACGGCCGCCCTTTCTTCT
CCGCTCGCCGCCGCTCCCCCCCCGGCTTCCAAATCGCCGCCTTCCGCCGC
GGCAGAGGTGAGGCGGGGAGGCGCTCGGGGTCTGCCCGGCGTCAAGAGAC
CCACCGCGCGTCCGACGAGGCCGGAGACCCTGCGGTAGATGGCGTTGGCC
TTGGCACCCGCCCTGGCTCCCCCTCTCCTCGTCTGGCGCCTGAGCCCTTC
GCGACTCTGGTCCACTCCGGGGCTGAAGAACGCCTTCGAGGGGATTGCAT
CAGCGCCGCCGCCGCCGACTCCGCCGTGGCGAGAAGAAGGAGAAGCAGCA
GAATTGGCGAGAGTGGCGGCGGCTGCACCGCGGCCGGGAGTGGAGGCTAC
AGCAGCAGCGCGAACGGGCGGGTCCGCCGCTGCTGCTGCCGGCGTCCCTT
CATTCCCCCCCTCGGGCTCTACGGCCGCCCTTTCTTCTCCGCTCGCCGCC
GCTCCCCCCCCGGCTTCCAAATCGCCGCCTTCCGCCGCGGCAGAGGTGAG
GCGGGGAGGCGCTCGGGGTCTGCCCGGCGTCAAGAGACCCACCGCGCGTC
CGACGAGGCCGGAGACCCTGCGGTAG
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