mRNA_E-fasciculatus_F_contig12214.1720.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12214.1720.1
Unique NamemRNA_E-fasciculatus_F_contig12214.1720.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: A0A6H5JPR7_9PHAE (JmjC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPR7_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 1.080e-44
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:   10 RVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTLREQQ 255
            RVVL+AGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIE RAKIHSKFRFPY KEMM FAASNFLNTLREQQ
Sbjct:  270 RVVLNAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIEARAKIHSKFRFPYFKEMMLFAASNFLNTLREQQ 351
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: D7FTJ5_ECTSI (JmjC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTJ5_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 1.120e-44
Identity = 78/82 (95.12%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:   10 RVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTLREQQ 255
            RVVL+AGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIE RAKIHSKFRFPY KEMM FAASNFLNTLREQQ
Sbjct:  279 RVVLNAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIEARAKIHSKFRFPYFKEMMLFAASNFLNTLREQQ 360
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: A0A0L6USB8_9BASI ([Histone H3]-dimethyl-L-lysine(36) demethylase n=1 Tax=Puccinia sorghi TaxID=27349 RepID=A0A0L6USB8_9BASI)

HSP 1 Score: 111 bits (278), Expect = 1.830e-26
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    4 VGRVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTLREQQVRGKTRLNYPGGKSEAL 306
            V +V L AG+T+MIP+GWIHAV+TP  SLVFGGNFLHSLNIP+QL++H IE   K+  KFRFP+   M++F A ++L  L EQ +  ++ L  PG  S AL
Sbjct:  323 VYKVSLTAGQTMMIPTGWIHAVYTPVDSLVFGGNFLHSLNIPLQLRIHQIENNTKVPKKFRFPFFIPMLWFVACHYLRKL-EQGLIQQSHL-APGSSSTAL 421
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: A0A0C4F1S5_PUCT1 (JmjC domain-containing histone demethylation protein 1 n=2 Tax=Puccinia triticina (isolate 1-1 / race 1 (BBBD)) TaxID=630390 RepID=A0A0C4F1S5_PUCT1)

HSP 1 Score: 110 bits (274), Expect = 6.470e-26
Identity = 50/80 (62.50%), Postives = 63/80 (78.75%), Query Frame = 1 
Query:    4 VGRVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTL 243
            V +V L AG+T+MIP+GWIHAV TP  SLVFGGNFLHSLNIP+QL++H IE   K+  KFRFP+   M++FAAS++L  L
Sbjct:  355 VYKVSLTAGQTMMIPTGWIHAVHTPVDSLVFGGNFLHSLNIPLQLRIHQIENNTKVPKKFRFPFFLPMLWFAASHYLRKL 434
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: A0A665VYF9_ECHNA (Lysine-specific demethylase 2B-like n=1 Tax=Echeneis naucrates TaxID=173247 RepID=A0A665VYF9_ECHNA)

HSP 1 Score: 110 bits (274), Expect = 6.650e-26
Identity = 54/108 (50.00%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:   10 RVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTLRE-----QQVR-----GKTRLNYPGGKSEA 303
            RV L  G T  IPSGWIHAV+TP+ +LVFGGN LHS NIPMQL +H IE R K+HSKFRFP+  EM ++    +L+ L +     Q++R     G T L++P   S++
Sbjct:  262 RVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILHSFNIPMQLTIHEIENRTKVHSKFRFPFYYEMCWYVLERYLHCLTKRSYLSQEIRKDCNLGSTSLDFPKTPSDS 369
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: A0A6G1QI52_9TELE (Lysine-specific demethylase 2B n=1 Tax=Channa argus TaxID=215402 RepID=A0A6G1QI52_9TELE)

HSP 1 Score: 109 bits (272), Expect = 1.250e-25
Identity = 49/92 (53.26%), Postives = 62/92 (67.39%), Query Frame = 1 
Query:   10 RVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTLREQQVRGKTRLNYP 285
            RV L+ G T  IPSGWIHAV+TPK +LVFGGN LHS NIPMQL +H IE R K+HSKFRFP+  EM ++    +L+ L ++    +     P
Sbjct:  270 RVELEQGYTFFIPSGWIHAVYTPKDTLVFGGNILHSFNIPMQLTIHEIENRTKVHSKFRFPFYYEMCWYVLERYLHCLTKRSYLSQETRKEP 361
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: A0A1A8PAK9_9TELE (Lysine (K)-specific demethylase 2B (Fragment) n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8PAK9_9TELE)

HSP 1 Score: 105 bits (263), Expect = 2.890e-25
Identity = 47/81 (58.02%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   10 RVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTLREQ 252
            RV L  G T  IPSGWIHAV+TP  +LVFGGN LHS NIPMQ  +H IE R K+HSKFRFP+  EM ++    +LN L ++
Sbjct:   93 RVELKQGYTFFIPSGWIHAVYTPADTLVFGGNILHSFNIPMQFTIHEIENRTKVHSKFRFPFYYEMCWYVLERYLNCLTKR 173
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: A0A0S7HAK0_9TELE (KDM2B (Fragment) n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7HAK0_9TELE)

HSP 1 Score: 103 bits (257), Expect = 3.180e-25
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   10 RVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTLREQ 252
            RV L  G T  IPSGWIHAV+TP  +LVFGGN LHS NIPMQ  +H IE R K+HSKFRFP+  EM ++    +L+ L ++
Sbjct:  147 RVELKQGYTFFIPSGWIHAVYTPVDTLVFGGNILHSFNIPMQFTIHEIENRTKVHSKFRFPFYYEMCWYVLERYLHCLTKR 227
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: A0A4Z2BIY7_9TELE (Uncharacterized protein n=1 Tax=Takifugu bimaculatus TaxID=433685 RepID=A0A4Z2BIY7_9TELE)

HSP 1 Score: 107 bits (268), Expect = 4.290e-25
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:   10 RVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTL 243
            RV L  G T  IPSGWIHAV+TP+ +LVFGGN LHS NIPMQL +H IE R K+HSKFRFP+  EM ++    +LN L
Sbjct:  270 RVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILHSFNIPMQLTIHEIENRTKVHSKFRFPFYYEMCWYVLERYLNCL 347
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BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Match: H2TM68_TAKRU (Uncharacterized protein n=2 Tax=Takifugu rubripes TaxID=31033 RepID=H2TM68_TAKRU)

HSP 1 Score: 107 bits (268), Expect = 4.320e-25
Identity = 48/78 (61.54%), Postives = 57/78 (73.08%), Query Frame = 1 
Query:   10 RVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHGIETRAKIHSKFRFPYLKEMMFFAASNFLNTL 243
            RV L  G T  IPSGWIHAV+TP+ +LVFGGN LHS NIPMQL +H IE R K+HSKFRFP+  EM ++    +LN L
Sbjct:  270 RVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILHSFNIPMQLTIHEIENRTKVHSKFRFPFYYEMCWYVLERYLNCL 347
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12214.1720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPR7_9PHAE1.080e-4495.12JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FTJ5_ECTSI1.120e-4495.12JmjC domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A0L6USB8_9BASI1.830e-2655.45[Histone H3]-dimethyl-L-lysine(36) demethylase n=1... [more]
A0A0C4F1S5_PUCT16.470e-2662.50JmjC domain-containing histone demethylation prote... [more]
A0A665VYF9_ECHNA6.650e-2650.00Lysine-specific demethylase 2B-like n=1 Tax=Echene... [more]
A0A6G1QI52_9TELE1.250e-2553.26Lysine-specific demethylase 2B n=1 Tax=Channa argu... [more]
A0A1A8PAK9_9TELE2.890e-2558.02Lysine (K)-specific demethylase 2B (Fragment) n=1 ... [more]
A0A0S7HAK0_9TELE3.180e-2556.79KDM2B (Fragment) n=2 Tax=Poeciliopsis prolifica Ta... [more]
A0A4Z2BIY7_9TELE4.290e-2561.54Uncharacterized protein n=1 Tax=Takifugu bimaculat... [more]
H2TM68_TAKRU4.320e-2561.54Uncharacterized protein n=2 Tax=Takifugu rubripes ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12214contigE-fasciculatus_F_contig12214:476..1293 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score163.7
Seed ortholog evalue4.5e-38
Seed eggNOG ortholog2880.D7FTJ5
Preferred nameJHD1
KEGG rclassRC00185,RC03038
KEGG koko:K10276,ko:K11445
KEGG ReactionR10056
GOsGO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0006325,GO:0006355,GO:0006357,GO:0006464,GO:0006482,GO:0006807,GO:0006996,GO:0008150,GO:0008152,GO:0008214,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016043,GO:0016491,GO:0016569,GO:0016570,GO:0016577,GO:0016705,GO:0016706,GO:0019219,GO:0019222,GO:0019538,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0032451,GO:0032452,GO:0032784,GO:0032786,GO:0032968,GO:0034243,GO:0035064,GO:0036211,GO:0042393,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051171,GO:0051173,GO:0051213,GO:0051252,GO:0051254,GO:0051276,GO:0051864,GO:0055114,GO:0060255,GO:0065007,GO:0070076,GO:0070544,GO:0070988,GO:0071704,GO:0071840,GO:0080090,GO:0140030,GO:0140034,GO:0140096,GO:1901564,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
EggNOG free text desc.demethylase
EggNOG OGsKOG1633@1,KOG1633@2759
EC1.14.11.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size306
Cds size306
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.3721476-CDS-E-fasciculatus_F_contig12214:475..6161622927730.3721476-CDS-E-fasciculatus_F_contig12214:475..616Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12214 476..616 +
1695995669.6562624-CDS-E-fasciculatus_F_contig12214:475..6161695995669.6562624-CDS-E-fasciculatus_F_contig12214:475..616Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12214 476..616 +
1622927730.3830016-CDS-E-fasciculatus_F_contig12214:1128..12931622927730.3830016-CDS-E-fasciculatus_F_contig12214:1128..1293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12214 1129..1293 +
1695995669.669471-CDS-E-fasciculatus_F_contig12214:1128..12931695995669.669471-CDS-E-fasciculatus_F_contig12214:1128..1293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12214 1129..1293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12214.1720.1prot_E-fasciculatus_F_contig12214.1720.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12214 476..1293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12214.1720.1

>prot_E-fasciculatus_F_contig12214.1720.1 ID=prot_E-fasciculatus_F_contig12214.1720.1|Name=mRNA_E-fasciculatus_F_contig12214.1720.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=102bp
AVGRVVLDAGETLMIPSGWIHAVFTPKPSLVFGGNFLHSLNIPMQLQVHG
IETRAKIHSKFRFPYLKEMMFFAASNFLNTLREQQVRGKTRLNYPGGKSE
AL
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mRNA from alignment at E-fasciculatus_F_contig12214:476..1293+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12214.1720.1 ID=mRNA_E-fasciculatus_F_contig12214.1720.1|Name=mRNA_E-fasciculatus_F_contig12214.1720.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=818bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12214:476..1293+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGTGGGCAGGGTGGTGCTCGACGCGGGGGAGACTCTGATGATCCCCTC
GGGCTGGATACACGCCGTCTTCACGCCCAAGCCGTCCCTCGTGTTCGGCG
GCAACTTCCTGCACTCGCTCAACATCCCCATGCAGCTGCAGGTATGCTTG
GTATGCTTGTGTGTGGTGTGTCGTTGCGATGGGGCAGGACTTGGCGTTTG
GGTGTGTTCCGCATGCAGCAGTGCGGCTTCGACACGTTTACCGTTGCGCA
GCGGTCCATGTGGCGGCTTCTCAAGAGTACATGTTGGCCTGCTGTAGCTA
TTGCCGTGGAGAGTGCGTTGTCCAGCCGCGCGGTAGGTCGGTCCACCAGC
GGCGTTGCTACCTCCAAACTTCCTATTGTACGTTTGGGTTTTGGGGGAAG
ACAATCCGTGGAGCTTTGATGAACATCAGCCATCGTCTGTCCGTGCCGAA
CTGCTCGCATTGGGGGCACTTCGGTCGACGGGACCTCTCCCGCGTTTGTC
GTGCGTGAAACGGTTGTCGTACGTCAGTGTTAACGTGTTGGGGTGTGTGT
GCTGCGATAGCGTGCCGTTGGGTACGATTTACAGTGACAGTTATAAATTA
GCACCTACGCGATACGGTACAATATGATACACGACGCCGTGTGAAATTGA
CAGGTCCACGGTATCGAGACGCGGGCCAAGATCCACAGCAAGTTCCGCTT
CCCTTACTTGAAGGAGATGATGTTCTTCGCAGCCTCCAACTTCCTCAACA
CGCTCAGGGAGCAGCAGGTGCGTGGCAAAACTCGCTTGAACTATCCAGGT
GGTAAGTCCGAGGCGTTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12214:476..1293+

>mRNA_E-fasciculatus_F_contig12214.1720.1 ID=mRNA_E-fasciculatus_F_contig12214.1720.1|Name=mRNA_E-fasciculatus_F_contig12214.1720.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=612bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12214:476..1293+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GCCGTGGGCAGGGTGGTGCTCGACGCGGGGGAGACTCTGATGATCCCCTC
GGGCTGGATACACGCCGTCTTCACGCCCAAGCCGTCCCTCGTGTTCGGCG
GCAACTTCCTGCACTCGCTCAACATCCCCATGCAGCTGCAGGCCGTGGGC
AGGGTGGTGCTCGACGCGGGGGAGACTCTGATGATCCCCTCGGGCTGGAT
ACACGCCGTCTTCACGCCCAAGCCGTCCCTCGTGTTCGGCGGCAACTTCC
TGCACTCGCTCAACATCCCCATGCAGCTGCAGGTCCACGGTATCGAGACG
CGGGCCAAGATCCACAGCAAGTTCCGCTTCCCTTACTTGAAGGAGATGAT
GTTCTTCGCAGCCTCCAACTTCCTCAACACGCTCAGGGAGCAGCAGGTGC
GTGGCAAAACTCGCTTGAACTATCCAGGTGGTAAGTCCGAGGCGTTGGTC
CACGGTATCGAGACGCGGGCCAAGATCCACAGCAAGTTCCGCTTCCCTTA
CTTGAAGGAGATGATGTTCTTCGCAGCCTCCAACTTCCTCAACACGCTCA
GGGAGCAGCAGGTGCGTGGCAAAACTCGCTTGAACTATCCAGGTGGTAAG
TCCGAGGCGTTG
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