mRNA_E-fasciculatus_F_contig12213.1719.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12213.1719.1
Unique NamemRNA_E-fasciculatus_F_contig12213.1719.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: D7G2M8_ECTSI (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M8_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 1.940e-33
Identity = 62/65 (95.38%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAALFCGASQLVNHVLHR 195
            LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEP+FCKIFRDLDLMTVQFAAL  GASQLVNHVLHR
Sbjct:  919 LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPSFCKIFRDLDLMTVQFAALSGGASQLVNHVLHR 983
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: A0A6H5JTE4_9PHAE (E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTE4_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.510e-31
Identity = 59/65 (90.77%), Postives = 61/65 (93.85%), Query Frame = 1 
Query:    1 LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAALFCGASQLVNHVLHR 195
            L+VLSFAAEVRAGLWRKNGQ MNDQVLNYAEP+FCKIFRDLDL  VQFAAL CGASQLVNHVLHR
Sbjct: 1071 LDVLSFAAEVRAGLWRKNGQSMNDQVLNYAEPSFCKIFRDLDLTAVQFAALSCGASQLVNHVLHR 1135
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: A0A7S1FYU0_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FYU0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 3.230e-17
Identity = 40/67 (59.70%), Postives = 49/67 (73.13%), Query Frame = 1 
Query:   10 LSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAALF-----CGASQLVNHVLHR 195
            LS AA++RAGLW++NG CM DQ +NYAEP FCK+FRD DL  VQFAAL        A+ L+N +LHR
Sbjct:  506 LSRAAQIRAGLWKRNGHCMYDQCMNYAEPPFCKMFRDADLFLVQFAALGYSHGESSAAYLINLLLHR 572
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: K8YRX5_NANGC (E3 ubiquitin-protein ligase (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YRX5_NANGC)

HSP 1 Score: 80.9 bits (198), Expect = 2.830e-16
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAALFCGASQLVNHVLHR 195
            ++VL  +AE+RAGLWR+NGQ M DQV+NY EP FC++FRD+DL+ VQ AAL  G  + V + L R
Sbjct:   38 VSVLVLSAEIRAGLWRRNGQLMMDQVINYREPPFCRVFRDMDLLLVQMAALAWGDWEKVMNALLR 102
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: W7U0V5_9STRA (E3 ubiquitin-protein ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0V5_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 2.870e-16
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 1 
Query:    1 LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAALFCGASQLVNHVLHR 195
            ++VL  +AE+RAGLWR+NGQ M DQV+NY EP FC++FRD+DL+ VQ AAL  G  + V + L R
Sbjct:  988 VSVLVLSAEIRAGLWRRNGQLMMDQVINYREPPFCRVFRDMDLLLVQMAALAWGDWEKVMNALLR 1052
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: A0A7S1YB19_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YB19_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 1.860e-15
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 1 
Query:    7 VLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAALFCGASQLVNHVLHR 195
            V+S  A+VRA LW++NG  M+DQVLNY+EP FC+  RD D++ +QF+AL  GA+ LVN +LHR
Sbjct:   19 VMSRVAQVRADLWKRNGPKMDDQVLNYSEPPFCRSLRDADVLLLQFSALGRGAAVLVNLLLHR 81
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: A0A7S1XZF4_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XZF4_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 3.440e-15
Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAALFCGASQLVNHVLHR 195
            L V+  AA+V +G+WR+NG  + DQV NY E  F +IFRDLD++ VQFAAL  G    V+HV+HR
Sbjct:  399 LRVIVMAAQVSSGMWRRNGTVIQDQVNNYGEGPFYRIFRDLDIIAVQFAALLYGPDAFVSHVVHR 463
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: A0A7S2B4T4_9STRA (E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B4T4_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 5.610e-15
Identity = 31/51 (60.78%), Postives = 42/51 (82.35%), Query Frame = 1 
Query:    1 LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAAL 153
            L+VL  AAEVR G+W++NG  M DQV+NY+EP FCK+FRDLDL+ +Q+A +
Sbjct:   84 LSVLVLAAEVRIGMWKRNGHAMQDQVMNYSEPPFCKMFRDLDLLMLQWAGV 134
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: A0A7S3KZJ0_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZJ0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 1.650e-14
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAALFCGASQLVN 180
            L VL+ AA+VRAGLWR+NG  +NDQVLNYAEP FC+  RD DL+ VQFA L  G  Q +N
Sbjct:  928 LLVLTRAAQVRAGLWRRNGPGLNDQVLNYAEPPFCRTMRDADLLLVQFAVL--GRKQGLN 985
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BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Match: A0A7R9U7G2_9STRA (E3 ubiquitin-protein ligase n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7G2_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 2.250e-14
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAALFCGASQLVNHVLHR 195
            L V+  A+++ +G+WR+NG  + DQV NY E  F KIFRDLD++ +QFAAL  G    V+HV+HR
Sbjct:  674 LRVVVMASQISSGMWRRNGMSIQDQVNNYGEGLFFKIFRDLDVIALQFAALLYGPDAFVSHVVHR 738
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12213.1719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2M8_ECTSI1.940e-3395.38E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sil... [more]
A0A6H5JTE4_9PHAE1.510e-3190.77E3 ubiquitin-protein ligase n=1 Tax=Ectocarpus sp.... [more]
A0A7S1FYU0_9STRA3.230e-1759.70E3 ubiquitin-protein ligase n=1 Tax=Corethron hyst... [more]
K8YRX5_NANGC2.830e-1656.92E3 ubiquitin-protein ligase (Fragment) n=2 Tax=Nan... [more]
W7U0V5_9STRA2.870e-1656.92E3 ubiquitin-protein ligase n=2 Tax=Monodopsidacea... [more]
A0A7S1YB19_9STRA1.860e-1557.14E3 ubiquitin-protein ligase n=1 Tax=Grammatophora ... [more]
A0A7S1XZF4_9STRA3.440e-1553.85E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Pha... [more]
A0A7S2B4T4_9STRA5.610e-1560.78E3 ubiquitin-protein ligase (Fragment) n=1 Tax=Dic... [more]
A0A7S3KZJ0_9STRA1.650e-1463.33E3 ubiquitin-protein ligase n=1 Tax=Amphora coffei... [more]
A0A7R9U7G2_9STRA2.250e-1450.77E3 ubiquitin-protein ligase n=1 Tax=Pinguiococcus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12213contigE-fasciculatus_F_contig12213:266..1067 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.2
Seed ortholog evalue3.6e-28
Seed eggNOG ortholog2880.D7G2M8
KEGG koko:K10625,ko:K11978
GOsGO:0000003,GO:0000151,GO:0000280,GO:0001101,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006259,GO:0006310,GO:0006325,GO:0006342,GO:0006355,GO:0006464,GO:0006508,GO:0006511,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007140,GO:0007141,GO:0007276,GO:0007283,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009620,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009890,GO:0009892,GO:0009894,GO:0009966,GO:0009968,GO:0009987,GO:0010029,GO:0010033,GO:0010243,GO:0010468,GO:0010498,GO:0010528,GO:0010529,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010648,GO:0016043,GO:0016458,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0016597,GO:0016740,GO:0019216,GO:0019219,GO:0019222,GO:0019538,GO:0019787,GO:0019941,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023057,GO:0030163,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031406,GO:0032006,GO:0032007,GO:0032446,GO:0032501,GO:0032504,GO:0032991,GO:0033522,GO:0033993,GO:0034641,GO:0035825,GO:0036094,GO:0036211,GO:0040029,GO:0042221,GO:0043161,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043177,GO:0043200,GO:0043201,GO:0043207,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0044703,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048232,GO:0048285,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0050789,GO:0050793,GO:0050794,GO:0050832,GO:0050896,GO:0050994,GO:0051171,GO:0051172,GO:0051239,GO:0051252,GO:0051253,GO:0051276,GO:0051321,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0060255,GO:0061630,GO:0061659,GO:0061982,GO:0065007,GO:0070647,GO:0070728,GO:0070887,GO:0071229,GO:0071230,GO:0071233,GO:0071310,GO:0071417,GO:0071495,GO:0071596,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097305,GO:0098542,GO:0140013,GO:0140096,GO:1900140,GO:1901360,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494,GO:1902531,GO:1902532,GO:1902679,GO:1903046,GO:1903506,GO:1903507,GO:1990234,GO:2000026,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.E3 ubiquitin-protein ligase
EggNOG OGsKOG1139@1,KOG1139@2759,KOG1140@1,KOG1140@2759
EC2.3.2.27
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size198
Cds size198
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927730.3027422-CDS-E-fasciculatus_F_contig12213:265..3881622927730.3027422-CDS-E-fasciculatus_F_contig12213:265..388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12213 266..388 -
1695995669.6277735-CDS-E-fasciculatus_F_contig12213:265..3881695995669.6277735-CDS-E-fasciculatus_F_contig12213:265..388Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12213 266..388 -
1622927730.3213508-CDS-E-fasciculatus_F_contig12213:992..10671622927730.3213508-CDS-E-fasciculatus_F_contig12213:992..1067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12213 993..1067 -
1695995669.6414113-CDS-E-fasciculatus_F_contig12213:992..10671695995669.6414113-CDS-E-fasciculatus_F_contig12213:992..1067Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12213 993..1067 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12213.1719.1prot_E-fasciculatus_F_contig12213.1719.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12213 266..1067 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12213.1719.1

>prot_E-fasciculatus_F_contig12213.1719.1 ID=prot_E-fasciculatus_F_contig12213.1719.1|Name=mRNA_E-fasciculatus_F_contig12213.1719.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=66bp
LNVLSFAAEVRAGLWRKNGQCMNDQVLNYAEPNFCKIFRDLDLMTVQFAA
LFCGASQLVNHVLHR*
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mRNA from alignment at E-fasciculatus_F_contig12213:266..1067-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12213.1719.1 ID=mRNA_E-fasciculatus_F_contig12213.1719.1|Name=mRNA_E-fasciculatus_F_contig12213.1719.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=802bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12213:266..1067- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTAACGTGCTGTCCTTCGCGGCGGAGGTCAGGGCGGGGCTGTGGAGGAA
GAACGGCCAGTGCATGAACGACCAGGTGAGAAAAAGGAGCGAGCAGGAAT
AAAAGACTTCGAAGCGTTGCGTATGTTTGTTCTGTTGCAGTTTAGTAGCA
ACCACCGCGTTGATGGTCTGGCCGATGAAATGGTCGATTTTTTCGGCGGG
ACAGGGTAGGCGGAAACACCTTCCCGATCAGCGCACCCCACAGGTTTAGA
GCAGCGACGATATGCATGTGTCCGTGATTTTCGTTTTGTGTGTATTTCTT
TTGTTTGGCATCGAGCGCACAAATCGGCTGTCTGACGAGAGAGACGCCAA
ACTTGTCGCGGGACCATTCACACCTCTCTTCACACCAACGACTGCGCTTT
TCTTCTGGTAGGCGGACTCACTCCCCCGGCACGCGCGAGGGTATGGCAGA
TTTTGATTTGCGTGTGCCTTGTTGCCGAACATGGCATCGACCGCGCCGAC
CGTCTGACCAAAGAGAGAGAGAGAGAGAGAGAGAGTCAGGGGGAGACAAT
GAACCAGGGGTGCATATGTACTACGATACGCCTACTACCTTGTGGACAAA
AAGCAAATGTTCCACGGTTGTTGTTCCGTTTTCCCCCTGTTGCCTTTCGA
TCTGTTGCGCTTTTTTGTTGGGGGTGCAGGTGCTCAACTACGCGGAGCCG
AACTTCTGCAAGATTTTCCGCGACCTGGACCTGATGACGGTGCAGTTCGC
GGCCCTGTTCTGCGGCGCTTCGCAGCTGGTTAACCACGTTCTCCACAGGT
GA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12213:266..1067-

>mRNA_E-fasciculatus_F_contig12213.1719.1 ID=mRNA_E-fasciculatus_F_contig12213.1719.1|Name=mRNA_E-fasciculatus_F_contig12213.1719.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=396bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12213:266..1067- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTAACGTGCTGTCCTTCGCGGCGGAGGTCAGGGCGGGGCTGTGGAGGAA
GAACGGCCAGTGCATGAACGACCAGCTTAACGTGCTGTCCTTCGCGGCGG
AGGTCAGGGCGGGGCTGTGGAGGAAGAACGGCCAGTGCATGAACGACCAG
GTGCTCAACTACGCGGAGCCGAACTTCTGCAAGATTTTCCGCGACCTGGA
CCTGATGACGGTGCAGTTCGCGGCCCTGTTCTGCGGCGCTTCGCAGCTGG
TTAACCACGTTCTCCACAGGTGAGTGCTCAACTACGCGGAGCCGAACTTC
TGCAAGATTTTCCGCGACCTGGACCTGATGACGGTGCAGTTCGCGGCCCT
GTTCTGCGGCGCTTCGCAGCTGGTTAACCACGTTCTCCACAGGTGA
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