prot_E-fasciculatus_F_contig1221.1718.1 (polypeptide) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E-fasciculatus_F_contig1221.1718.1
Unique Nameprot_E-fasciculatus_F_contig1221.1718.1
Typepolypeptide
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Sequence length1723
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1221.1718.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1406..1587
e-value: 1.3E-9
score: 39.6
NoneNo IPR availablePANTHERPTHR10644DNA REPAIR/RNA PROCESSING CPSF FAMILYcoord: 654..1594

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1221contigE-fasciculatus_F_contig1221:8842..18156 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1221.1718.1mRNA_E-fasciculatus_F_contig1221.1718.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalemRNAE-fasciculatus_F_contig1221 8842..18156 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E-fasciculatus_F_contig1221.1718.1 ID=prot_E-fasciculatus_F_contig1221.1718.1|Name=mRNA_E-fasciculatus_F_contig1221.1718.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=1723bp
NGGGDDLLVVKVTLEWELVRLNPRHQFRELPKVRADACVELSVLASGFLG
PSPHRDVHRASRTSAPDAVLRLTVRGPGHDKGLDSGHESTRKNGSKTLIA
CVCEGAIVLLAFSQDTPGDRAMITSSVTVPLIPENIREGSANISTNMNSQ
PRGKHRPSPGDLAFPQKLHVPPPTVSGLSTVLDLAILSGGGPEKSKTTAK
VHSPVVIALLLTNEAKGGSGSADGVGTCGNGFNDARETFLHTRRWVLSDG
REGVLRPGRWGLANLHPATCITALARGGILCVDPDGVKTFSEDGAPLLDV
KRSHRGRNLGISTQSFVDRNVRPVALTPFGSIRRRRDPDIRRHYSMKGGT
DSSEEFLLADMDGILHSVTVYAGHRNDAVKGSTRHAEPSTTKGHGSWRGD
HTRIECVKIETSSALVPCRLRHQRIKFLLPVGSEGLVFASMRSSPFTIIV
RISCPSGDLPSVVGSGGDNGATAYWKTLERAKEGRAGPCIGAISDLIVLP
ALRGDEQQARPCDFCASNKAPNTTQGTPNESRSTFQEEGVILRFPATCGK
TTPRGVRVVLATRPVGLQGASCGSSGYDPAKCLALLDLGLKLDTDAKGGI
GLPEGATLFAQPISAGGASCSTDKQRGMHRSWKEDNRQERADEKDECDAS
QRGHVLLLSDRVRNASHVLAVSSEGEVAPALQGETKGFDTGVRTVHLGRI
EPAGYIVQVTEESVNIVQQSAEQGVFEAVASWRPPPPSSPSASPSAPFFK
VQHACTAGVMVALACASTMILVKVQIGTQKISEQSTPFLRGEAPISAEMG
GMLAVRELRRMELDGGAVSAMGMRLHECNGVKHEDAGRNTNAPTQAALIA
AASWDSPSVAVFSFSTSTATNAATGSLEDRQKCDAPSDSTAALDKLAAWY
PPWGRSSPPSAAVGRDASASEAGAAKDTALGDGGGVLTRALAFVRFESES
EPMSLVAAAADGSVAVATWQDVLSREAKGNGKGEDDGQTERSRSRHNHCL
QDTLVTVALFQIGQGPVRLEVFQGPGRVGGTEKRRKGGDGKGHGYRVQAQ
DTSFGERERVFVNSDTMDAVIHWCSNPPAPNQPPRGWQCSQQVSRMGCYP
RQSIVHLPQRKTVTASINPAGEQFAWLTTAEPTRRSRASSSYFDAESRED
SCCEADIGGKVSPRELSLSFGTLDEREPLGQLCRKTPVPWTPTHLLYVPA
TRSIVVACNTNESEGDEDNLTTTARATAAPIHRARQDMPPSLPTGSSMST
LRIFDAETLEERPGAGPLQLRAGVRVTGIALLSCPRGGAGLRRTRAPDAQ
GAPRIDEIPMAVGGDVVTVSCCSFAKEGSTTTTDNGPEAVDGGVLGCADE
EKAPAPVGVTFGGSGADLPLNSPTAAIPTSSATSPPPPPPPPPPPPPLPP
GTAGVKMVIAAFEVVAYSTDGRGCGMELAALAASPEIAGACFGVKALGNR
FVVASADDRVIVFGWNGRQGGGFRSGSPRESLNLTAQASCRTSSGGCVTA
LGTYGNFVAVAEFLRCVSLYRYDERARTMSLIARHSRDSLIVDVLALSRH
PSFPPVPTGVCVGEGETTAVNGIPLVAVGDRTTNTVAILACTSRRLPAAS
TRNDGANRNVSDIEEEGEADVVMPHRGGGDDDIDRSTRGAAADEGARKGS
CNSDVRPLRLLSVWPCQDKITSLVAASGSVVDNRAPPMYTEGLDENGGRL
FLLGTGCGEVLTIGVDAPSRVH*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom_sf