mRNA_E-fasciculatus_F_contig122.1710.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E-fasciculatus_F_contig122.1710.1
Unique Name	mRNA_E-fasciculatus_F_contig122.1710.1
Type	mRNA
Organism	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)

Homology

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: D7FSC9_ECTSI (Putative transcriptional regulator n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FSC9_ECTSI)

HSP 1 Score: 827 bits (2136), Expect = 1.280e-298
Identity = 419/455 (92.09%), Postives = 430/455 (94.51%), Query Frame = 3

Query:   63 MGLVEKAVYRAVLRKARLFDQNIAAKALIQRHGIVRPPLTDSDAIGGDRRLYAAALEVVVGSHCHVRPERLAWSLQRLIRTIRMADHNNLEVVADRAAENEAKEAEGVPLEDRTIWEQDAMVAISLEIFFPGALKGVDGADKVGAGFAAIRELSSKWALAESLGLTEDLDKNGQTPCVKRRRRKGKVAGPRNTTTKRALRVLRHQERHARAAGERNTRPPSSLSAGRGFRLDTQTSLVRPGVLVEPTETPAKGVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPVMSRLAWLHPHKDVGGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFALAGGDDMWRNMLEAMGGPYAAMARVPHGRQWARAGVKISPSDWP 1427
            MGLVEKAVYRAVLRKARLFD+NIAAKALIQRHGIVRPPLT+SDAIGGDRRLYAAALEVVVGSHCHVRPERLAWSLQRLIRTIRMAD NNLEVVADRAAENEAKEAEGVPLEDRT+WEQDAMVAISLEIFFPGALKGVDGADKVGAGFAAIRELSSKWALAESLGLTE L+ NGQT CVKRRRRKGKVAGPRNTTTKRALRVLRHQER          R  S LS GRGF LDT+ SL RPG +VEPT TPAKGVYLISHPLS+LYAPEEMFHRSVVLLVDHSPLGSYGL+VNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPVMSRLAWLHPHK+VGGVPLAEGAEKPVFFCGKMEKAAELLTKG AKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFALAGG+DMWR+MLEAMGGPYAAMARVPHGRQWAR GVKISPSDWP
Sbjct:    1 MGLVEKAVYRAVLRKARLFDKNIAAKALIQRHGIVRPPLTESDAIGGDRRLYAAALEVVVGSHCHVRPERLAWSLQRLIRTIRMADQNNLEVVADRAAENEAKEAEGVPLEDRTVWEQDAMVAISLEIFFPGALKGVDGADKVGAGFAAIRELSSKWALAESLGLTEYLENNGQTSCVKRRRRKGKVAGPRNTTTKRALRVLRHQERXXXXXXXXXXRSTSPLSPGRGFELDTRNSLARPGDVVEPTGTPAKGVYLISHPLSFLYAPEEMFHRSVVLLVDHSPLGSYGLVVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPVMSRLAWLHPHKEVGGVPLAEGAEKPVFFCGKMEKAAELLTKGAAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFALAGGEDMWRDMLEAMGGPYAAMARVPHGRQWARTGVKISPSDWP 455

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: A0A7Y5WA64_9BACT (UPF0301 protein HUU10_02990 n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7Y5WA64_9BACT)

HSP 1 Score: 103 bits (258), Expect = 6.280e-22
Identity = 74/198 (37.37%), Postives = 105/198 (53.03%), Query Frame = 3

Query:  792 VEPTETPAKGVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPVM-SRLAWLHPHKDV--GGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFALAGGDD-MWRNMLEAMGGPYAAMARVP 1373
            V+P  TPAKG  L+S P+  L  P   F R+VVLL +HSP GS+GLI+NK    TL+E +   +LP          + P+ +GGPV    L  LH   +   G V +  G    V++ G  E+  ++LT G A  AD    +G S W  GQLQ E+N G W++A     ++     D +WR +L  MGG Y+ ++  P
Sbjct:    6 VQP-RTPAKGKLLLSEPM--LQDPN--FRRTVVLLCEHSPDGSFGLIINKPIPITLDEVMPGQSLP----------EIPLFLGGPVQPDTLHILHKLGEAIAGSVEVTPG----VWWGGDFEEIRQMLTLGVADGADCRFFIGYSGWAEGQLQDEMNQGGWLVADNRPGYSFTEDPDHLWRQILRDMGGDYSILSNFP 184

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: A0A1G9KFE3_9BACT (UPF0301 protein SAMN04488090_0995 n=1 Tax=Siphonobacter aquaeclarae TaxID=563176 RepID=A0A1G9KFE3_9BACT)

HSP 1 Score: 99.4 bits (246), Expect = 2.920e-20
Identity = 63/195 (32.31%), Postives = 100/195 (51.28%), Query Frame = 3

Query:  801 TETPAKGVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPV-MSRLAWLHPHKDV--GGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPAS-FALAGGDDMWRNMLEAMGGPYAAMARVP 1373
            T+   KG  L++ P    +  +E F RSVVL+ +H+P GS+GL++ +     L++ + +D  P            P+ VGGPV  + L ++H   D+  G V L E     +F+ G  ++  +LL  GT   AD    +G S W AGQL GE+    WI++++ +  F     D +WR +L  MGG Y  ++  P
Sbjct:   13 TQKVTKGSVLLAEP----FLGDENFERSVVLMCEHNPQGSFGLVLTQTTELLLDDVIDDDIYPDV----------PLFVGGPVEKNTLHFIHRRPDIIEGSVELGER----LFWSGNFQQIKQLLNLGTLPVADIRFFIGYSGWSAGQLDGEIARDSWIVSQSDSDLFFDCATDQLWRTILRNMGGAYRVLSHYP 189

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: A0A2T0TIC1_9BACT (UPF0301 protein CLV58_102151 n=1 Tax=Spirosoma oryzae TaxID=1469603 RepID=A0A2T0TIC1_9BACT)

HSP 1 Score: 92.8 bits (229), Expect = 4.440e-18
Identity = 63/194 (32.47%), Postives = 96/194 (49.48%), Query Frame = 3

Query:  807 TPAKGVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKN-PVRVGGPVMSR-LAWLHPHKDV--GGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFAL-AGGDDMWRNMLEAMGGPYAAMARVP 1373
            T + G  L++ P    +  +  F RSVVL+ ++SP G++GLI+N+     L            SD L+ V  + P+ VGGPV    L ++H   D+  G + + EG    +++ G  E+  + +  GT    D    +G S WD GQL  E+ H  WI+ +A A F       D WR++L  MGG Y  +A  P
Sbjct:    7 TVSTGSLLVAEP----FLGDGNFDRSVVLICEYSPAGTFGLIMNQATDLQL------------SDVLEDVYADLPLFVGGPVQQNTLHFIHRRPDLIEGSILVDEG----LYWSGDFEQVKQAVNMGTLTEQDIRFFLGYSGWDGGQLTSEIRHKSWIVTRADAEFLFETPAPDFWRDVLNRMGGMYRTIAHYP 180

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: A0A6G9AXQ8_9BACT (UPF0301 protein G8759_33460 n=4 Tax=Spirosoma TaxID=107 RepID=A0A6G9AXQ8_9BACT)

HSP 1 Score: 92.0 bits (227), Expect = 8.240e-18
Identity = 60/189 (31.75%), Postives = 96/189 (50.79%), Query Frame = 3

Query:  819 GVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPVMSR-LAWLHPHKDV--GGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFAL-AGGDDMWRNMLEAMGGPYAAMARVP 1373
            G  LI+ P    +  +  F RSVVL+ +HSP G++GL++N+     L + + +D     S          + +GGPV    L ++H   D+  G + +  G    +++ G  E+  + +  GT    D    VG S WDAGQL GEL+   WI+++A A+F      D  WR +L+ MGG + ++A  P
Sbjct:   11 GSLLIAEP----FMGDTNFDRSVVLVCEHSPAGTFGLVLNQTTDLQLGDVI-DDVYTTQS----------LFIGGPVQQNTLHFIHRRPDLIDGSIRVTSG----LYWSGDFEQVKQAINVGTLTERDIRFFVGYSGWDAGQLAGELDQKAWIVSRADATFLFETPADQFWRGVLKRMGGEFKSIAHYP 180

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: A0A7L5DI50_9BACT (UPF0301 protein HH216_04180 n=1 Tax=Spirosoma sp. CJU-R4 TaxID=2728024 RepID=A0A7L5DI50_9BACT)

HSP 1 Score: 90.1 bits (222), Expect = 3.840e-17
Identity = 62/190 (32.63%), Postives = 94/190 (49.47%), Query Frame = 3

Query:  819 GVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKN-PVRVGGPVMSR-LAWLHPHKDV--GGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFAL-AGGDDMWRNMLEAMGGPYAAMARVP 1373
            G  L++ P    +  +  F RSVVL+ ++SP GS+GLI+N+     L            SD L  V  + P+ VGGPV    L ++H   D+  G + + +G    +++ G  E+  + +  GT    D    +G S WD GQL  E+ H  WI+ +A A F       D WR++L+ MGG Y  +A  P
Sbjct:   11 GSLLVAEP----FLGDGNFDRSVVLICEYSPAGSFGLIMNQATDLQL------------SDVLDDVYADLPLFVGGPVQQNTLHFIHRRPDLIDGAIQVDQG----LYWSGDFEQVKQAVNMGTLTEKDIRFFLGYSGWDGGQLANEIKHKSWIVTRANADFLFDTPVIDFWRDVLKRMGGMYQTIAHYP 180

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: A0A7Y5C3N3_9FLAO (UPF0301 protein HUU48_06815 n=2 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7Y5C3N3_9FLAO)

HSP 1 Score: 89.7 bits (221), Expect = 6.640e-17
Identity = 61/190 (32.11%), Postives = 94/190 (49.47%), Query Frame = 3

Query:  810 PAKGVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPVM-SRLAWLHPHKDVGGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFALAG-GDDMWRNMLEAMGGPYAAMARVP 1373
            P KG  LIS P    Y P+  F R+VVLL +H+  GS+GLI+NK  G ++ + L +   P        V    V +GGPV   +L ++H   ++  +P +      +++ G  +    L+ KG     +    +G S WD GQL+ EL    WI++    S      G  +W N+L+ MGG +A +A  P
Sbjct:   17 PDKGRLLISDP----YLPDPSFRRAVVLLCEHNQKGSFGLILNKPLGISINDTLID--FP--------VFNAEVYMGGPVEPDKLFFIHTLGNI--LPESIHITHNLYWSGNFDALKNLIKKGEVTQNNIRFFIGYSGWDKGQLEEELKGDSWIISNTDVSAIFESKGTLLWHNILKKMGGQFAVLANFP 190

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: G8TCS0_NIAKG (UPF0301 protein Niako_7310 n=7 Tax=Niastella TaxID=354354 RepID=G8TCS0_NIAKG)

HSP 1 Score: 89.0 bits (219), Expect = 9.010e-17
Identity = 61/192 (31.77%), Postives = 92/192 (47.92%), Query Frame = 3

Query:  810 PAKGVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPV-MSRLAWLHPHKDV--GGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFAL-AGGDDMWRNMLEAMGGPYAAMARVP 1373
            P  G+ LI+ P    +  +  F R+VV L DH   GS+G ++N+  G TL E        L +D  +  LK PV  GGPV M  + +LH + D+  G   + +G    +++ G  E A  L+  G+         +G S W +GQL  EL    W+ A+A          D++W+  L+ +GG Y  MA  P
Sbjct:    4 PGPGILLIAEP----FLKDPNFSRTVVFLCDHQDEGSFGFVINRVFGHTLNE--------LMNDLDE--LKLPVFYGGPVQMDTIHFLHQYPDLIPGSYEVLDG----IYWGGDFETAITLIKAGSIDTTKIRFFIGYSGWGSGQLNDELKEKSWLTAQATRKLVFHRKADEIWKESLKHLGGDYEMMANFP 177

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: A0A4V1UQ20_9BACT (UPF0301 protein EOO01_34085 n=1 Tax=Chitinophagaceae bacterium TaxID=1869212 RepID=A0A4V1UQ20_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 9.010e-17
Identity = 59/192 (30.73%), Postives = 91/192 (47.40%), Query Frame = 3

Query:  810 PAKGVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPV-MSRLAWLH--PHKDVGGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAPASFALAGG-DDMWRNMLEAMGGPYAAMARVP 1373
            PA G  LI+ P    +  +  F R+VV + DH   GS+G ++N+  G TL+E + +             +K PV  GGPV M  + +LH  P +  G   +  G    +++ G  E A +LL KG    A     +G S W  GQL  ELN   W+  +A          D++W+  ++++GG Y+ M   P
Sbjct:    4 PAPGTLLIAEP----FLKDPNFSRTVVFICDHHEQGSFGFVLNRSYGHTLDELMND----------MGDMKIPVFYGGPVQMDTIHFLHQYPEEIAGSYEIMNG----IYWGGDFELAIDLLRKGQIDLARIRFFIGYSGWSEGQLSEELNQKSWLTLEANRKLVFFKDVDELWKEAVKSLGGDYSMMINFP 177

[Close]

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Match: A0A3D8HGL4_9BACT (UPF0301 protein DWU89_06010 n=3 Tax=Parabacteroides TaxID=375288 RepID=A0A3D8HGL4_9BACT)

HSP 1 Score: 89.4 bits (220), Expect = 9.460e-17
Identity = 61/190 (32.11%), Postives = 94/190 (49.47%), Query Frame = 3

Query:  810 PAKGVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLEEALCEDALPLASDALQQVLKNPVRVGGPVMS-RLAWLHPHKDVGGVPLAEGAEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGLWIMAKAP-ASFALAGGDDMWRNMLEAMGGPYAAMARVP 1373
            PA+G  LIS P    +  +  F RSVVLLV+H+P GS GL++NK K E L     ED        L++    P+ +GGPV + RL ++H   D+  +P +    + ++F G        +  G          +G S W  GQL  E++   W+++ A   +  LA G+D W+  LE++G  Y    + P
Sbjct:   17 PAQGSILISEP----FLQDAYFQRSVVLLVEHAPEGSMGLVLNK-KTELLVNTFFED--------LKKYPDMPIYLGGPVSANRLFFIHSLGDMI-IPNSVKINEHLYFDGDFNALLRYIQNGHPIDGKVKFFLGYSGWQEGQLTNEISKNSWVVSHASNRNVLLAEGEDFWKRSLESLGSQYETWTKYP 192

The following BLAST results are available for this feature:

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot

BLAST of mRNA_E-fasciculatus_F_contig122.1710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7FSC9_ECTSI	1.280e-298	92.09	Putative transcriptional regulator n=2 Tax=Ectocar...	[more]
A0A7Y5WA64_9BACT	6.280e-22	37.37	UPF0301 protein HUU10_02990 n=1 Tax=Bacteroidetes ...	[more]
A0A1G9KFE3_9BACT	2.920e-20	32.31	UPF0301 protein SAMN04488090_0995 n=1 Tax=Siphonob...	[more]
A0A2T0TIC1_9BACT	4.440e-18	32.47	UPF0301 protein CLV58_102151 n=1 Tax=Spirosoma ory...	[more]
A0A6G9AXQ8_9BACT	8.240e-18	31.75	UPF0301 protein G8759_33460 n=4 Tax=Spirosoma TaxI...	[more]
A0A7L5DI50_9BACT	3.840e-17	32.63	UPF0301 protein HH216_04180 n=1 Tax=Spirosoma sp. ...	[more]
A0A7Y5C3N3_9FLAO	6.640e-17	32.11	UPF0301 protein HUU48_06815 n=2 Tax=Flavobacterial...	[more]
G8TCS0_NIAKG	9.010e-17	31.77	UPF0301 protein Niako_7310 n=7 Tax=Niastella TaxID...	[more]
A0A4V1UQ20_9BACT	9.010e-17	30.73	UPF0301 protein EOO01_34085 n=1 Tax=Chitinophagace...	[more]
A0A3D8HGL4_9BACT	9.460e-17	32.11	UPF0301 protein DWU89_06010 n=3 Tax=Parabacteroide...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E-fasciculatus_F_contig122	contig	E-fasciculatus_F_contig122:28701..33328 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	834.7
Seed ortholog evalue	2e-239
Seed eggNOG ortholog	2880.D7FSC9
EggNOG free text desc.	Uncharacterized ACR, COG1678
EggNOG OGs	2QV60@2759,COG1678@1
COG Functional cat.	K
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
Hectar predicted targeting category	mitochondrion
Ec32 ortholog description	Protein of unknown function UPF0301
Ec32 ortholog	Ec-20_005040.1
Exons	8
Model size	1859
Cds size	1368
Stop	1
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E-fasciculatus_F_contig122.1710.1	prot_E-fasciculatus_F_contig122.1710.1	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	polypeptide	E-fasciculatus_F_contig122 29130..33266 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622927729.137377-UTR-E-fasciculatus_F_contig122:28700..29129	1622927729.137377-UTR-E-fasciculatus_F_contig122:28700..29129	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig122 28701..29129 -
1695995669.0691679-UTR-E-fasciculatus_F_contig122:28700..29129	1695995669.0691679-UTR-E-fasciculatus_F_contig122:28700..29129	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig122 28701..29129 -
1622927729.2840958-UTR-E-fasciculatus_F_contig122:33266..33328	1622927729.2840958-UTR-E-fasciculatus_F_contig122:33266..33328	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig122 33267..33328 -
1695995669.1617465-UTR-E-fasciculatus_F_contig122:33266..33328	1695995669.1617465-UTR-E-fasciculatus_F_contig122:33266..33328	Ectocarpus fasciculatus Ec846f_Ec191_B4_f female	UTR	E-fasciculatus_F_contig122 33267..33328 -

The following CDS feature(s) are a part of this mRNA:

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E-fasciculatus_F_contig122:28701..33328-
coding sequence from alignment at E-fasciculatus_F_contig122:28701..33328-

protein sequence of mRNA_E-fasciculatus_F_contig122.1710.1

>prot_E-fasciculatus_F_contig122.1710.1 ID=prot_E-fasciculatus_F_contig122.1710.1|Name=mRNA_E-fasciculatus_F_contig122.1710.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=456bp
MGLVEKAVYRAVLRKARLFDQNIAAKALIQRHGIVRPPLTDSDAIGGDRR
LYAAALEVVVGSHCHVRPERLAWSLQRLIRTIRMADHNNLEVVADRAAEN
EAKEAEGVPLEDRTIWEQDAMVAISLEIFFPGALKGVDGADKVGAGFAAI
RELSSKWALAESLGLTEDLDKNGQTPCVKRRRRKGKVAGPRNTTTKRALR
VLRHQERHARAAGERNTRPPSSLSAGRGFRLDTQTSLVRPGVLVEPTETP
AKGVYLISHPLSWLYAPEEMFHRSVVLLVDHSPLGSYGLIVNKDKGETLE
EALCEDALPLASDALQQVLKNPVRVGGPVMSRLAWLHPHKDVGGVPLAEG
AEKPVFFCGKMEKAAELLTKGTAKPADFSLVVGASAWDAGQLQGELNHGL
WIMAKAPASFALAGGDDMWRNMLEAMGGPYAAMARVPHGRQWARAGVKIS
PSDWP*

mRNA from alignment at E-fasciculatus_F_contig122:28701..33328-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E-fasciculatus_F_contig122.1710.1 ID=mRNA_E-fasciculatus_F_contig122.1710.1|Name=mRNA_E-fasciculatus_F_contig122.1710.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4628bp|location=Sequence derived from alignment at E-fasciculatus_F_contig122:28701..33328- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCGCACAGCACGGCACCCACCCACACCCACGCGCCACCCTTTCGGGCACA
CATAATCCCATCATGGGTCTCGTGGAAAAGGCGGTTTACCGAGCAGTGCT
GCGCAAAGCACGGCTGTTCGACCAAAACATAGCAGCCAAGGTGAGCAAAG
CTAGTACAGCAGTAGAAGGAGGACTGACTATTGTATGTAGCGACGAGACT
ACAGCGTACACGCAAGACGTGTTTGTTTTCTCTCTGCACCCTGCACACAC
GCCTAATGCTTGCGCCTCAAACCTATATGAAGCTTCTCGCACATTGCCCA
TCTGTTTGTTATTGCGCGTGCTTCTCCATAACGTGAATCATCGGAACGCC
TTTGCAGCGGAAGCGCATTTGCTACAATAACTCTACCTATCGGTTCGGAA
CATCCCGTGCCCCCCAAAGGGTACTCTGTAGCGGTTTTTGCTTACCGGAT
GCTGTGTAGGTGTATCATGCTCGCTGTTCACAATCCTGTACCCCGGCACT
TCCTACACGCTACAATCGCTATGGGAACTAGCCTAACCTCTGACAAGTTG
ACGAGCGTGGGCTACAACAGGCTCAAGCGACCACGCTACTTGTGATTGCT
GCACAGAGTCGAGGGAGGCACACTGCTGTGCAGATTACTTGGTGGGCAGC
TCGGGTTTGTGAACCCCCCCCCCCCCCCNNNNNNNNNGAATCTTCTCTCT
TTCGCGGTGCTGTACTGCTCACTGCTCACCAGGCCCTCATACAGCGGCAT
GGCATCGTCCGACCACCGTTGACCGACTCGGATGCTATCGGGGGAGATCG
GCGTCTATATGCGGCTGCCTTGGAGGTGGTTGTGGGCAGCCATTGCCACG
TCAGGTGGGCTTTCTTTCGAATATGTTGCCCCGTCGTATCGGTACAAACA
CAATCCTTAAAATAGATTTAGGTCGTCTCAAGCTATAAAACGTCTTTCTG
TTGTTGGTAGACCGCGGCACTACTTACCTTACCACACGCTTTACTATTGC
CGTTGCTCTTCCACGATCCGCTCGGTAGGCCGGAGCGACTGGCATGGTCT
CTGCAGAGGCTAATTCGCACGATCCGCATGGCAGACCACAACAACCTAGA
GGTAGTTGCGGATAGGGCCGCGGAGAATGAAGCCAAGGAGGCCGAGGGGG
TGCCGCTGGAAGATAGAACAATTTGGGAGCAAGACGCGATGGTAGCCATT
TCACTCGAAATATTCTTCCCGGGGGCTTTGAAGGGCGTCGACGGGGCGGA
CAAGGTTGGCGCAGGTGACATAGATGTATGTACCTCGTACCAGGGGTTGG
GGCTGATGGTTCAGGCATGTATTTGCTGGTGATTCTCGCTTTTGCCTACT
CAAACCTTCCCGGTTCGCCCAAGGCTCACCTGGCGTTGGATCACAGGTTA
TGTTTTTTGTTGCCGGTGCTCCTCCTGGCGTTCGTAAGCTGCACCAGCAC
GCCCATGCCTGTTGTAGGTGGGTGATCCTGGTACCACATGATAGACTGAC
TCGTGTGTGGAGTGCGGAAGGGATGTACTTGGTAACGATGGGTTGTACAC
AATGACCGCCGGTCCATTTAAAGCATGACTCTTGGTGTTGGTGTGCTGCA
GGCTTTGCAGCCATCCGAGAGCTGTCTTCGAAGTGGGCATTGGCGGAATC
TCTAGGGCTTACCGAGGACCTGGACAAGAACGGGCAAACGCCTTGCGTCA
AACGGCGAAGAAGAAAGGGAAAGGTGGCCGGACCCAGAAACACGGTAGGC
TTGTGCAAGTAGCCACGCCCCGATTTCGAGTGCCCGAGATTTCAATTTTC
TACTTCCCACGCTCTGCGCAAACAGATGGAAATGCCTGTGCCATAATGCT
CTCTTACGGTTTCCCGCCCCGTGCATGTATGGCTCCATCGGACCGGATCG
ACGTCTCGGTCTTGCTGCCTCAAGACCACAAAGAGAGCACTACGGGTGCT
GCGGCACCAGGAGCGACATGCCAGGGCAGCAGGGGAGCGGAATACCCGAC
CACCGTCGTCGTTGTCGGCAGGGAGAGGGTTCCGGCTTGACACCCAAACC
AGTTTGGTGCGGCCGGGGGTTCTGGTAGAGCCCACAGAAACGCCAGCCAA
GGGCGTCTACCTGATATCACACCCACTGTCGTGGCTTTACGCGCCCGAGG
AGATGTTTCATCGGTCGGTGGTACTGCTGGTCGATCACTCGCCATTGGGA
TCGTACGGCCTGATCGTGAACAAGGACAAGGGCGAGACATTGGAAGAAGC
CTTGTGCGAGGACGCGCTCCCGTTGGCATCTGACGCGCTGCAGCAAGTGC
TGAAAAATCCTGTCAGGGTTGGGGGCCCCGTCATGTCGCGCCTGGCTTGG
CTGCACCCTCACAAGGACGTCGGGGGGGTTCCGTTGGCTGAGGGTGCCGA
GAAACCGGTAAGGACATCCTCCAGGAAGGCCAGCACGGACTGTAGCTTCA
GAAAGTTGTAAAGTTGTGGAGGAGGGTGTTGAGCGGTTGGGCTTGCAGGC
AGCCGTTCGAACGTTGTTGGCACGGTCCTGGTCCTGGTTCGTTTTTGGAC
ACTTGATCGCTAGTCTTCGTTGTTTCTCACCCAAAGATGGTTGGACTGGT
TGGGTGTGATGGAGAGATTGGACGAAATTGCAACAGAAACGTGGCGCTAG
CCGGGAAGGAAGCTGGCTAAACTATGTCAGCGAATATGAACTTGTTCATG
TTGTACAGCCAGTAGATCAGTGCATGCCCGCGCGCGCCCTTTCGTCGGTG
CTTGAAATGCTTCAAGCTACGCAGCATGAAGTTGCACGTGTGATGGCTGT
CCATTGTGTTGGGTCCGTTTGACTTATTCGTTTGCGTGTGACAATCGCTT
GACAGTCGGTTGGTTCTCTTTCAGCAGCTGCGGCTGGTGATCCACGTGAG
TGCGTCACTTGTTTGTTCTAAACTGAAGCATGTACGGTGACTTTCTTGGT
TCGGCGCTCAGGTGTTCTTCTGCGGGAAGATGGAGAAAGCGGCCGAGCTA
TTGACCAAGGGCACCGCTAAACCGGCTGATTTCTCCCTGGTAGTAGGCGC
ATCAGCATGGGATGTGAGTCGATTCTGTGGTAATGCTATGTCGAAAATCA
TGTACACTGTGCAGGACAAACACGACTCCTAAATGGCGTCCCTGGAAAAG
CCGTACCCTTGCCATTGATCCGGTACTTCTGTGCTTGTGTGGAGCGATGT
CCTTTTGAGTTGTCGTACCCCTGATTCCCATTTTATTGGGATCTGTTTCC
CACCGCATGGCGTGCTTTCTCTCTCCCCATCCCAGCTCACGGCCTTACGT
GTCATACCTCGGCGATTGGACGTTGAGGAAATTGCTGGGTATTGTGCTAT
GCATATGTCTAAGTGTACTGTTGGTCCTGCAGACATGTGCGGGAGCACCA
ATATTCTCTAGCCACTCAGTGCATTAAACGCAGAATGATATAATACTTTT
CCCGAGCTCGGTGGTGTAGTCGTCCAGTGATGCCGCACTACCATGCTGCT
GTTCGTTGCATGTCAACGTGTTTGATTTCCCCGCTCTTGTTGTTCTTGGG
CTTGTTGCTCAGGCTGGTCAACTGCAAGGGGAATTGAATCACGGCTTATG
GATCATGGCTAAGGTACGTGACTAGTATTTTAACGCGTGCTCTCGGAACA
TGGATCCATGAAGAATGCGCAACAGATACTATAGGCAGTCCCAAGCCCCG
TATTGTGCTCTCTCAACAATGTATTCTGCTACCTGCAGATTGCTGCTGCT
GTCATGCGCATGCGACTATTCAGCCTCGCTGTTCTCGGCTGAACAGATGT
TCAGCAGTACATGTCGCTCAATTTGCGTGTTGTCCAGCACGAGCACCTGC
CTGTGTCCTGTGTTCTGCAAGCATTAGCTTCCTAATATGTGCTGTTCTGT
ATGTGTTGAGTTTTTGGGTGAGGACACAGCGACAGCGGAGCACTGTGGGA
GGACTGTTTGCCATAAACGAGCTGCGCATCTCTTCCTCTATTCCCTGTTC
CAACACGGCGCCACGATGCACCCCAACTCGAACGACGTGCCCGCAGGCAC
CGGCAAGTTTCGCCTTGGCCGGGGGCGACGACATGTGGCGAAACATGTTG
GAAGCTATGGGAGGGCCGTACGCTGCGATGGCCCGGGTACCCCACGGCCG
GCAGTGGGCAAGGGCCGGGGTGAAGATCTCACCTTCTGACTGGCCATGAT
CGAGTGATCTGCTGTAGCTTGTGCAATCGTAGGATTCCCTTGATGGTGTT
TCTTGACCATACAGCCCAGTGTTACCAGCCTCTTGCATCTTGCATGCTAG
TATAGGGTCGGCGGTGCTTATGCGTCAAGATCAACGTGCGCTGGTGGTGT
GTACGAAACAGGCCCTCTGGCACATTCTAGGCTGGATGCGATTGGAGACT
CTTAGTATAGGTTCTCGGGTCGTCCATGCATCTGGCACCTCGGGATGACT
TTGCGAAATGGAAGCTAGGCACACACGGTCTGCAGCACAATTTTGCTCAT
CGCTAAGACTAAGCTGGGCGCGTGCGTGTGCCTGCAGGCCACGTATGAAT
CCCGAGGGTCGCTTCTTCCCGCGTGCGAGCGATGAATATCGTCTAGTCAC
ACCTGCTGACCGGGTGACAGAAATACCA

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig122:28701..33328-

>mRNA_E-fasciculatus_F_contig122.1710.1 ID=mRNA_E-fasciculatus_F_contig122.1710.1|Name=mRNA_E-fasciculatus_F_contig122.1710.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2736bp|location=Sequence derived from alignment at E-fasciculatus_F_contig122:28701..33328- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTCTCGTGGAAAAGGCGGTTTACCGAGCAGTGCTGCGCAAAGCACG
GCTGTTCGACCAAAACATAGCAGCCAAGATGGGTCTCGTGGAAAAGGCGG
TTTACCGAGCAGTGCTGCGCAAAGCACGGCTGTTCGACCAAAACATAGCA
GCCAAGGCCCTCATACAGCGGCATGGCATCGTCCGACCACCGTTGACCGA
CTCGGATGCTATCGGGGGAGATCGGCGTCTATATGCGGCTGCCTTGGAGG
TGGTTGTGGGCAGCCATTGCCACGTCAGGCCCTCATACAGCGGCATGGCA
TCGTCCGACCACCGTTGACCGACTCGGATGCTATCGGGGGAGATCGGCGT
CTATATGCGGCTGCCTTGGAGGTGGTTGTGGGCAGCCATTGCCACGTCAG
GCCGGAGCGACTGGCATGGTCTCTGCAGAGGCTAATTCGCACGATCCGCA
TGGCAGACCACAACAACCTAGAGGTAGTTGCGGATAGGGCCGCGGAGAAT
GAAGCCAAGGAGGCCGAGGGGGTGCCGCTGGAAGATAGAACAATTTGGGA
GCAAGACGCGATGGTAGCCATTTCACTCGAAATATTCTTCCCGGGGGCTT
TGAAGGGCGTCGACGGGGCGGACAAGGTTGGCGCAGGCCGGAGCGACTGG
CATGGTCTCTGCAGAGGCTAATTCGCACGATCCGCATGGCAGACCACAAC
AACCTAGAGGTAGTTGCGGATAGGGCCGCGGAGAATGAAGCCAAGGAGGC
CGAGGGGGTGCCGCTGGAAGATAGAACAATTTGGGAGCAAGACGCGATGG
TAGCCATTTCACTCGAAATATTCTTCCCGGGGGCTTTGAAGGGCGTCGAC
GGGGCGGACAAGGTTGGCGCAGGCTTTGCAGCCATCCGAGAGCTGTCTTC
GAAGTGGGCATTGGCGGAATCTCTAGGGCTTACCGAGGACCTGGACAAGA
ACGGGCAAACGCCTTGCGTCAAACGGCGAAGAAGAAAGGGAAAGGTGGCC
GGACCCAGAAACACGGCTTTGCAGCCATCCGAGAGCTGTCTTCGAAGTGG
GCATTGGCGGAATCTCTAGGGCTTACCGAGGACCTGGACAAGAACGGGCA
AACGCCTTGCGTCAAACGGCGAAGAAGAAAGGGAAAGGTGGCCGGACCCA
GAAACACGACCACAAAGAGAGCACTACGGGTGCTGCGGCACCAGGAGCGA
CATGCCAGGGCAGCAGGGGAGCGGAATACCCGACCACCGTCGTCGTTGTC
GGCAGGGAGAGGGTTCCGGCTTGACACCCAAACCAGTTTGGTGCGGCCGG
GGGTTCTGGTAGAGCCCACAGAAACGCCAGCCAAGGGCGTCTACCTGATA
TCACACCCACTGTCGTGGCTTTACGCGCCCGAGGAGATGTTTCATCGGTC
GGTGGTACTGCTGGTCGATCACTCGCCATTGGGATCGTACGGCCTGATCG
TGAACAAGGACAAGGGCGAGACATTGGAAGAAGCCTTGTGCGAGGACGCG
CTCCCGTTGGCATCTGACGCGCTGCAGCAAGTGCTGAAAAATCCTGTCAG
GGTTGGGGGCCCCGTCATGTCGCGCCTGGCTTGGCTGCACCCTCACAAGG
ACGTCGGGGGGGTTCCGTTGGCTGAGGGTGCCGAGAAACCGACCACAAAG
AGAGCACTACGGGTGCTGCGGCACCAGGAGCGACATGCCAGGGCAGCAGG
GGAGCGGAATACCCGACCACCGTCGTCGTTGTCGGCAGGGAGAGGGTTCC
GGCTTGACACCCAAACCAGTTTGGTGCGGCCGGGGGTTCTGGTAGAGCCC
ACAGAAACGCCAGCCAAGGGCGTCTACCTGATATCACACCCACTGTCGTG
GCTTTACGCGCCCGAGGAGATGTTTCATCGGTCGGTGGTACTGCTGGTCG
ATCACTCGCCATTGGGATCGTACGGCCTGATCGTGAACAAGGACAAGGGC
GAGACATTGGAAGAAGCCTTGTGCGAGGACGCGCTCCCGTTGGCATCTGA
CGCGCTGCAGCAAGTGCTGAAAAATCCTGTCAGGGTTGGGGGCCCCGTCA
TGTCGCGCCTGGCTTGGCTGCACCCTCACAAGGACGTCGGGGGGGTTCCG
TTGGCTGAGGGTGCCGAGAAACCGGTGTTCTTCTGCGGGAAGATGGAGAA
AGCGGCCGAGCTATTGACCAAGGGCACCGCTAAACCGGCTGATTTCTCCC
TGGTAGTAGGCGCATCAGCATGGGATGTGTTCTTCTGCGGGAAGATGGAG
AAAGCGGCCGAGCTATTGACCAAGGGCACCGCTAAACCGGCTGATTTCTC
CCTGGTAGTAGGCGCATCAGCATGGGATGCTGGTCAACTGCAAGGGGAAT
TGAATCACGGCTTATGGATCATGGCTAAGGCTGGTCAACTGCAAGGGGAA
TTGAATCACGGCTTATGGATCATGGCTAAGGCACCGGCAAGTTTCGCCTT
GGCCGGGGGCGACGACATGTGGCGAAACATGTTGGAAGCTATGGGAGGGC
CGTACGCTGCGATGGCCCGGGTACCCCACGGCCGGCAGTGGGCAAGGGCC
GGGGTGAAGATCTCACCTTCTGACTGGCCATGAGCACCGGCAAGTTTCGC
CTTGGCCGGGGGCGACGACATGTGGCGAAACATGTTGGAAGCTATGGGAG
GGCCGTACGCTGCGATGGCCCGGGTACCCCACGGCCGGCAGTGGGCAAGG
GCCGGGGTGAAGATCTCACCTTCTGACTGGCCATGA