mRNA_E-fasciculatus_F_contig12198.1705.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12198.1705.1
Unique NamemRNA_E-fasciculatus_F_contig12198.1705.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12198.1705.1 vs. uniprot
Match: D8LHD0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD0_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 1.810e-36
Identity = 114/261 (43.68%), Postives = 126/261 (48.28%), Query Frame = 1 
Query:  373 QRSGN*CGPSIGTRVTNAPPSFPPLHDTSTSLRQQLHRKLGGMGG-APEGLFPPRRAAT*AGPMGAAATALALPRRRRRRLQLS*MAQSCSTAAQSFRLAGCCVRPPSEYLPACTAVNKLVILDRFATPSTQA-LHDRKQEHLVVGXXXXXXXXXXXGATRIPGRRSASSAMVGTPSSSQQSQDGXXXXXXXXXXXXXPPGPSLQQGSGGGVGGGDVNGGMGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILSF 1149
            QRS + CGPSIGTRV +APPS P LHD ST+ R QLHRK GGMGG APE L              A  T ++L R            Q                             +   +  R    ST   L    QEH VV            GATRI G RSASSAM G  SSSQQ +DG              PG SLQQGSG       V+GGMG MGNSSGDE LTTED YV  S +R+IVEL DT HR+LSF
Sbjct:   12 QRSRSGCGPSIGTRVASAPPSSPALHDASTTQRHQLHRKRGGMGGGAPEDLSS----------TAAGGTGVSLGR------------QGXXXXXXXXXXXXXXXXXXXXXXXXXXLPDDPGLQYRSPAVSTNGVLRPTPQEHFVVDGRGGGNSSSSSGATRIRGCRSASSAMAGMTSSSQQGEDGNGGGHRLGSVLLDTPGHSLQQGSGXXXX--XVDGGMGLMGNSSGDEKLTTEDQYVMASLKRSIVELSDTCHRLLSF 248
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12198.1705.1 vs. uniprot
Match: A0A6H5L6C9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6C9_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 2.940e-17
Identity = 53/83 (63.86%), Postives = 58/83 (69.88%), Query Frame = 1 
Query:  904 QQSQDGXXXXXXXXXXXXXPPGPSLQQGSG-GGVGGGDVNGGMGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILSF 1149
            QQ +DG              P PSLQQGSG GGVG  +V+ GMGFMGNSSGDENLTTEDPYVR S  RAI+EL DT HR+LSF
Sbjct:   38 QQGEDGNGGRFGWSPSSPTTPAPSLQQGSGRGGVG--NVDYGMGFMGNSSGDENLTTEDPYVRPSLNRAIIELSDTCHRLLSF 118
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12198.1705.1 vs. uniprot
Match: D8LHD3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHD3_ECTSI)

HSP 1 Score: 83.6 bits (205), Expect = 2.910e-14
Identity = 46/62 (74.19%), Postives = 52/62 (83.87%), Query Frame = 1 
Query:  964 PGPSLQQGSGGGVGGGDVNGGMGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILSF 1149
            PGPSLQQ SGGG G  DV+GGMG MG +SGDE+LTTEDPYV  S +RAIVEL+DT HR+LSF
Sbjct:  158 PGPSLQQRSGGGDG--DVDGGMGLMGKTSGDESLTTEDPYVLASLKRAIVELYDTCHRLLSF 217
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12198.1705.1 vs. uniprot
Match: A0A6H5K9Z6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9Z6_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.020e-11
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 1 
Query: 1027 MGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILSF 1149
            MGFMGNSSGDENLTTEDPYVR S +RAIVEL DT HR+LSF
Sbjct:    1 MGFMGNSSGDENLTTEDPYVRPSLERAIVELSDTCHRLLSF 41
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12198.1705.1 vs. uniprot
Match: A0A6H5KJQ4_9PHAE (EXS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 5.000e-10
Identity = 59/119 (49.58%), Postives = 67/119 (56.30%), Query Frame = 1 
Query:  838 GATRIPGRRSASSAMVGTPSSSQQSQDGXXXXXXXXXXXXX----PPGPSLQQGSGGGVGGGDVN------GGMGFMGNSSG-----DENLTTEDPYVRFSFQRAIVELFDTYHRILSF 1149
            GATRI GRRS+S+ M GT         G        XXXX     P GPS+  G GG V GG         GG GF+ NS G     DE+ TTEDPYVR S +RAIVEL+DT HR+LSF
Sbjct:  141 GATRIRGRRSSSNGMGGTAPXXXXXXXGEDENGWGSXXXXMSSSAPSGPSVGSGVGGDVDGGAAKANAGFGGGNGFLSNSGGAGAGDDESATTEDPYVRASLKRAIVELYDTCHRLLSF 259
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12198.1705.1 vs. uniprot
Match: A0A6H5J9V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9V0_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.320e-9
Identity = 29/40 (72.50%), Postives = 36/40 (90.00%), Query Frame = 1 
Query: 1027 MGFMGNSSGDENLTTEDPYVRFSFQRAIVELFDTYHRILS 1146
            MG M N+SGD++LTTEDPYVR + +RAIVEL+DTYHR+LS
Sbjct:    1 MGVMANTSGDKSLTTEDPYVRAALKRAIVELYDTYHRLLS 40
[Close]
BLAST of mRNA_E-fasciculatus_F_contig12198.1705.1 vs. uniprot
Match: D8LHJ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHJ2_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.560e-6
Identity = 56/115 (48.70%), Postives = 64/115 (55.65%), Query Frame = 3 
Query:  375 EERELMWAFYRNESDKCASKLSAPPRHLHLPSTAAPPEAGRD-GGCT*RP----FPTAAGGNMSRTNGGXXXXXXXXXXXXXXXXX---VLNGPELQYSS-PVVSTGWVLRPTPQ 692
            EE E MWAFYRNESD+CA+KLSA    LH  S +   +  R  GG    P       AAGG+     G XXXXX               +L+ P+LQYSS PVVSTG VLRPTPQ
Sbjct:  154 EELERMWAFYRNESDQCAAKLSA----LHDASASLRHQLHRKLGGMGGVPEDFSSAAAAGGSGVGYEGXXXXXXAVGDGPGGTAATTASLLDDPDLQYSSSPVVSTGGVLRPTPQ 264
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12198.1705.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LHD0_ECTSI1.810e-3643.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L6C9_9PHAE2.940e-1763.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHD3_ECTSI2.910e-1474.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9Z6_9PHAE2.020e-1185.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJQ4_9PHAE5.000e-1049.58EXS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5J9V0_9PHAE1.320e-972.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHJ2_ECTSI4.560e-648.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12198contigE-fasciculatus_F_contig12198:1048..3620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1152
Cds size606
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12198.1705.1prot_E-fasciculatus_F_contig12198.1705.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12198 2748..3620 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927728.5441995-UTR-E-fasciculatus_F_contig12198:1047..14241622927728.5441995-UTR-E-fasciculatus_F_contig12198:1047..1424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12198 1048..1424 +
1695995668.7418022-UTR-E-fasciculatus_F_contig12198:1047..14241695995668.7418022-UTR-E-fasciculatus_F_contig12198:1047..1424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12198 1048..1424 +
1622927728.5582712-UTR-E-fasciculatus_F_contig12198:2579..27471622927728.5582712-UTR-E-fasciculatus_F_contig12198:2579..2747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12198 2580..2747 +
1695995668.7522123-UTR-E-fasciculatus_F_contig12198:2579..27471695995668.7522123-UTR-E-fasciculatus_F_contig12198:2579..2747Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12198 2580..2747 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927728.570593-CDS-E-fasciculatus_F_contig12198:2747..28941622927728.570593-CDS-E-fasciculatus_F_contig12198:2747..2894Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12198 2748..2894 +
1695995668.7658482-CDS-E-fasciculatus_F_contig12198:2747..28941695995668.7658482-CDS-E-fasciculatus_F_contig12198:2747..2894Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12198 2748..2894 +
1622927728.5803344-CDS-E-fasciculatus_F_contig12198:3161..36201622927728.5803344-CDS-E-fasciculatus_F_contig12198:3161..3620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12198 3162..3620 +
1695995668.7759058-CDS-E-fasciculatus_F_contig12198:3161..36201695995668.7759058-CDS-E-fasciculatus_F_contig12198:3161..3620Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12198 3162..3620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12198.1705.1

>prot_E-fasciculatus_F_contig12198.1705.1 ID=prot_E-fasciculatus_F_contig12198.1705.1|Name=mRNA_E-fasciculatus_F_contig12198.1705.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=202bp
MSRTNGGGGDGPGTTTTTTTTTTTVLNGPELQYSSPVVSTGWVLRPTPQR
ILACVHCCQQAGHFGPFRNTVDPSSARPQTGTPCRGRERRRGRRRQQRGH
ENPRTQVSLKRDGGHAVIFTAEPRRERKGFRLGSVLLDTPWPFSAAGERW
WCWWWGRERRHGLHGQQQRRRKPDHRRPVCAVLLSESHRRAVRHLPPDSV
VQ
back to top

mRNA from alignment at E-fasciculatus_F_contig12198:1048..3620+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12198.1705.1 ID=mRNA_E-fasciculatus_F_contig12198.1705.1|Name=mRNA_E-fasciculatus_F_contig12198.1705.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2573bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12198:1048..3620+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCTCTTGTCCCTCCCGCCTTATCTCTCTTCAGAGTGTGCGTGTGCGTGTG
ACGGCAGGTAGACGGATGGACTGGTTGCTCGCGCCACGTGGTTGAGGTTG
TAAGGGGTTTAATGTTCAACAGCAGCAGCACATGATGACGCTTTTTGGAA
AGTGCTGAATCCCCCCGCATCTCTCGGTCGATCCGTTAATTAAATTAAAG
TCTTCTTACCTGTGCGATGGGCGATCTCTGTAGCCGTGCTGGCCTGCACG
ATCGCAGTGCACCCGAAGGCACAGAGAGCTTCGCGAACCTCGGTGGTTTC
TGTGGCATGCATGGTGGAAGGTGTCGATTTTAGTGCGGCGATTCTCTCCA
GTGATGAGCGACAGCAGGGCGACAGAGGTGAGTACCCATAGCGAGAGGTG
CATGATTCATCAACCCGTCGACGTAACTGCTTCCACACGACAGCGCTCTA
CAATTAGACTATGCTTCTGGGGATGCTACAGCATACACTGATATCTATGG
ATGATACCCCCGCTTGTACAGCCAGCTATGCATACCGCCCGGAAGGAGGA
GGAATCTGGGATAACCTTGACGCAACCCAACGAACTGCTGTGCGGGCTAG
TCTGCACGGTAGTTCAAGTACATGGCACGAGTTCGGCGGCGAAGGATTTG
AGCAAGGGTAGTTTTCCGCAAGGTTCCACCCCCAAAAGTGTGTTCATACG
TGTACGTTAGCCTACGTGTGTAGATGCAGTTCGGAAAAAACAACGAAATG
ATGGAAAAACTCCCCCAGTCCAACCTTGTTCAGGGTTGCTAATTTGGATT
TCAATTACATTACATAGACTGTGCGAAGCGGGAGAAGTTATCGCGTTCGT
TCCACCGCAACAGCAGCTGCAGAAGTAGGGTTATCAAACCTCAAAACGGC
TTCAGTCCCACGGAAAGAGCCGCGTGGTGGTGAACCCGTCCCACAAGCCC
GTCACCTATTGTAGATGTTCCTGTTTCGCGCTTCCGCCTTCCTTGAATTT
CTCCTTCTCTTTGACCAACAACACCTGGTATTCTCTATTGTACCGTAGTC
GACCCCGCAACGCTCCCTATTGTACGCGGAACGTGTTTGCTGCTGTAGCA
ACGCCCACGTCTGCTCCCATGCGCGCATCTGGTCCGTCCTGTCAAAGTCC
TCAGAGAGGGAGGATGGCGGATAGAAAAGGACATGTTGCGTTCTTTGGTG
GGTTGGTTCGTCAGGCTGGCACTTTGGCGTGCAACAAGCAAGGCACACGG
GCTCACCAACGAGGACCCTTCAATTGATCCGCAACAAAACTCCAGCCCAA
AATTCGCGCTGACAAAAAAAATGACATACTCCAAGTATTGCTTATTCTTG
ACAGGAATGGAGCACCTGAGTAGCACAACTCGTGCAAGCACACGGCATCA
ATGTTGAGTTTTTTCTTTCTCGTGCGGAAGTACTGACAGTCGATGTTCCG
CCTCTCCAACACCAGTTGTGCGAGATACTGTCGCCTCCGACCGGTATGGT
TATGCGTCCCGCCCGTCCCCCCGCCCACACAGGAGCGGGAACTGATGTGG
GCCTTCTATCGGAACGAGAGTGACAAATGCGCCTCCAAGCTTTCCGCCCC
TCCACGACACCTCCACCTCCCTTCGACAGCAGCTCCACCGGAAGCTGGGC
GGGATGGGGGGTGCACCTGAAGGCCTTTTCCCACCGCGGCGGGCGGCAAC
ATGAGCAGGACCAATGGGGGCGGCGGCGACGGCCCTGGCACTACCACGAC
GACGACGACGACGACTACAACTGTCCTGAATGGCCCAGAGCTGCAGTACA
GCAGCCCAGTCGTTTCGACTGGCTGGGTGCTGCGTCCGACCCCCCAGGTG
GGATTGGGTTGCGCTTGTGCTGGATGTCTTCTTTTGAGGAGATGATTGGA
CGATGATAGGGTACAGCGTCCACGTGACGGGTGTATCTGCGAAAGGAGGT
ACAATATGTAGTGTGAGCGTGTTTTACTTGCTTGTTCCATGCAATCGCGT
CTACACGCGGACCGACCGTGTTTGCCTATCCCCCCCGTCCTCCCCCGTCC
CCACTTCAGCATCTGCCCTGCATTGGCGTGTATACCTCCCCTCCCCCGCG
CGCGCTCGCCTCAGCGAATACTTGCCTGCGTGCACTGCTGTCAACAAGCT
GGTCATTTTGGACCGTTTCGCAACACCGTCGACCCAAGCTCTGCACGACC
GCAAACAGGAACACCTTGTCGTGGGCGGGAGCGGCGGCGGGGGCGGCGGC
GGCAGCAGCGGGGCCACGAGAATCCCCGGACGCAGGTCAGCCTCAAGCGC
GATGGTGGGCACGCCGTCATCTTCACAGCAGAGCCAAGACGGGAACGGAA
AGGGTTCCGGCTGGGGTCCGTCCTCCTCGACACCCCCTGGCCCTTCTCTG
CAGCAGGGGAGCGGTGGTGGTGTTGGTGGTGGGGACGTGAACGGCGGCAT
GGGCTTCATGGGCAACAGCAGCGGCGACGAAAACCTGACCACCGAAGACC
CGTATGTGCGGTTCTCCTTTCAGAGAGCCATCGTCGAGCTGTTCGACACC
TACCACCGGATTCTGTCGTTCAA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12198:1048..3620+

>mRNA_E-fasciculatus_F_contig12198.1705.1 ID=mRNA_E-fasciculatus_F_contig12198.1705.1|Name=mRNA_E-fasciculatus_F_contig12198.1705.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12198:1048..3620+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGAGCAGGACCAATGGGGGCGGCGGCGACGGCCCTGGCACTACCACGAC
GACGACGACGACGACTACAACTGTCCTGAATGGCCCAGAGCTGCAGTACA
GCAGCCCAGTCGTTTCGACTGGCTGGGTGCTGCGTCCGACCCCCCAGATG
AGCAGGACCAATGGGGGCGGCGGCGACGGCCCTGGCACTACCACGACGAC
GACGACGACGACTACAACTGTCCTGAATGGCCCAGAGCTGCAGTACAGCA
GCCCAGTCGTTTCGACTGGCTGGGTGCTGCGTCCGACCCCCCAGCGAATA
CTTGCCTGCGTGCACTGCTGTCAACAAGCTGGTCATTTTGGACCGTTTCG
CAACACCGTCGACCCAAGCTCTGCACGACCGCAAACAGGAACACCTTGTC
GTGGGCGGGAGCGGCGGCGGGGGCGGCGGCGGCAGCAGCGGGGCCACGAG
AATCCCCGGACGCAGGTCAGCCTCAAGCGCGATGGTGGGCACGCCGTCAT
CTTCACAGCAGAGCCAAGACGGGAACGGAAAGGGTTCCGGCTGGGGTCCG
TCCTCCTCGACACCCCCTGGCCCTTCTCTGCAGCAGGGGAGCGGTGGTGG
TGTTGGTGGTGGGGACGTGAACGGCGGCATGGGCTTCATGGGCAACAGCA
GCGGCGACGAAAACCTGACCACCGAAGACCCGTATGTGCGGTTCTCCTTT
CAGAGAGCCATCGTCGAGCTGTTCGACACCTACCACCGGATTCTGTCGTT
CAACGAATACTTGCCTGCGTGCACTGCTGTCAACAAGCTGGTCATTTTGG
ACCGTTTCGCAACACCGTCGACCCAAGCTCTGCACGACCGCAAACAGGAA
CACCTTGTCGTGGGCGGGAGCGGCGGCGGGGGCGGCGGCGGCAGCAGCGG
GGCCACGAGAATCCCCGGACGCAGGTCAGCCTCAAGCGCGATGGTGGGCA
CGCCGTCATCTTCACAGCAGAGCCAAGACGGGAACGGAAAGGGTTCCGGC
TGGGGTCCGTCCTCCTCGACACCCCCTGGCCCTTCTCTGCAGCAGGGGAG
CGGTGGTGGTGTTGGTGGTGGGGACGTGAACGGCGGCATGGGCTTCATGG
GCAACAGCAGCGGCGACGAAAACCTGACCACCGAAGACCCGTATGTGCGG
TTCTCCTTTCAGAGAGCCATCGTCGAGCTGTTCGACACCTACCACCGGAT
TCTGTCGTTCAA
back to top