mRNA_E-fasciculatus_F_contig12197.1704.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12197.1704.1
Unique NamemRNA_E-fasciculatus_F_contig12197.1704.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12197.1704.1 vs. uniprot
Match: D8LCP2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP2_ECTSI)

HSP 1 Score: 489 bits (1259), Expect = 4.970e-168
Identity = 257/307 (83.71%), Postives = 265/307 (86.32%), Query Frame = 1 
Query:    1 GGQTSGEHGKCGDGEIGIDEAAARMAGEVAQAQLPPEQPRYPLGNLIYEGSKLFWRTGESLRIAMHENKEKHCVAISTMLEGESDPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEIQSLPEDARAKLFDKARASVLSDYLLARLKLIDGGDADGSVTDTQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQETPAGPVEPPGEESLPVTKSDSIFPRGTPTPVVVKLPEDDGGGSGSFLLEDELVFSEVHTFSKHVSYKDFKRVENEVSEGLKDGHERIANAEKAQRRAHGSLENPYHRTSA 921
            GGQTSG HGK GDGEIGIDEAAARMAGEVAQAQLPPEQPR+PLG LIYEGSKLFWRTGESLRIAMHENKEKHC+AISTMLEGES+PFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEIQ LPEDARAKLFDKARASVLSDYLLARLKLIDG DADG+ TDTQA                               ETPA PVEPPGE SLPVTKSDSIFP GTPTPVVVKLPEDDGG SGSFLLEDELVFSE+HTFSKHVSYKDFKRVENEVSEGLKDGH+RI NA+KAQRRAHGSLENP+HRTSA
Sbjct:  172 GGQTSGGHGKRGDGEIGIDEAAARMAGEVAQAQLPPEQPRFPLGTLIYEGSKLFWRTGESLRIAMHENKEKHCIAISTMLEGESEPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEIQRLPEDARAKLFDKARASVLSDYLLARLKLIDGRDADGNATDTQASAAAISAAARLGLGGVGPGTAPESASTARAPETPAEPVEPPGEVSLPVTKSDSIFPIGTPTPVVVKLPEDDGGESGSFLLEDELVFSELHTFSKHVSYKDFKRVENEVSEGLKDGHDRIENADKAQRRAHGSLENPHHRTSA 478
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BLAST of mRNA_E-fasciculatus_F_contig12197.1704.1 vs. uniprot
Match: D8LSJ9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSJ9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.070e-6
Identity = 35/117 (29.91%), Postives = 62/117 (52.99%), Query Frame = 1 
Query:  124 PLGNLIYEGSKLFWRTGESLRIAMHENKEKHCVAISTMLEGESDPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEIQSLPEDARAKLFDKARASVLSDYLLARLKLIDGGDADG 474
            P+G L+++GS+ FWR+ E++ +A+H N ++  + IST        +P + VD   I V+  +AV    A       G+ +S+ +D R +  DKA  ++  +YL  R +   G +  G
Sbjct:  234 PIGELVHQGSRFFWRSKETIDVALHLNADEGLMTISTRCPERGYNYPAIFVDVSKIPVHKTEAVARANAV------GQFESMSKDERREATDKAMTALRVEYLQHRWRKSGGYNFHG 344
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BLAST of mRNA_E-fasciculatus_F_contig12197.1704.1 vs. uniprot
Match: A0A7S2BJX7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BJX7_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 5.620e-6
Identity = 34/112 (30.36%), Postives = 57/112 (50.89%), Query Frame = 1 
Query:  136 LIYEGSKLFWRTGESLRIAMHENKEKHCVAISTMLEGESDPFPVLKVDSRLIRVNGKDAVLERIAEMTEADKGEI--------QSLPEDARAKLFDKARASVLSDYLLARLK 447
            +IYEG+KLFWRT E + I MHE    HC+ + +      +  P + ++  +I    +D   E + E   A + E         + L +D  A++ +  R  +LS+Y+L RL+
Sbjct:  175 VIYEGTKLFWRTHEKIDIVMHEYSALHCIVMCSYNATTDEAHPNIIINKTMIEDTIED---EAVQEQLSAQRQEYCLRKQIVGRKLTDDEEAEVEESVRRGILSNYILLRLQ 283
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12197.1704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LCP2_ECTSI4.970e-16883.71EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
D8LSJ9_ECTSI1.070e-629.91EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2BJX7_9STRA5.620e-630.36Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12197contigE-fasciculatus_F_contig12197:257..3324 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score493.4
Seed ortholog evalue7.5e-137
Seed eggNOG ortholog2880.D8LCP2
EggNOG OGs2E61A@1,2SCSX@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size921
Cds size921
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12197.1704.1prot_E-fasciculatus_F_contig12197.1704.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12197 257..3324 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927728.4229634-CDS-E-fasciculatus_F_contig12197:256..3971622927728.4229634-CDS-E-fasciculatus_F_contig12197:256..397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 257..397 -
1695995668.6851609-CDS-E-fasciculatus_F_contig12197:256..3971695995668.6851609-CDS-E-fasciculatus_F_contig12197:256..397Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 257..397 -
1622927728.4372096-CDS-E-fasciculatus_F_contig12197:876..11981622927728.4372096-CDS-E-fasciculatus_F_contig12197:876..1198Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 877..1198 -
1695995668.6970913-CDS-E-fasciculatus_F_contig12197:876..11981695995668.6970913-CDS-E-fasciculatus_F_contig12197:876..1198Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 877..1198 -
1622927728.4599628-CDS-E-fasciculatus_F_contig12197:1494..16101622927728.4599628-CDS-E-fasciculatus_F_contig12197:1494..1610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 1495..1610 -
1695995668.705704-CDS-E-fasciculatus_F_contig12197:1494..16101695995668.705704-CDS-E-fasciculatus_F_contig12197:1494..1610Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 1495..1610 -
1622927728.4773767-CDS-E-fasciculatus_F_contig12197:2111..22521622927728.4773767-CDS-E-fasciculatus_F_contig12197:2111..2252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 2112..2252 -
1695995668.7142167-CDS-E-fasciculatus_F_contig12197:2111..22521695995668.7142167-CDS-E-fasciculatus_F_contig12197:2111..2252Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 2112..2252 -
1622927728.489971-CDS-E-fasciculatus_F_contig12197:2552..26601622927728.489971-CDS-E-fasciculatus_F_contig12197:2552..2660Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 2553..2660 -
1695995668.723407-CDS-E-fasciculatus_F_contig12197:2552..26601695995668.723407-CDS-E-fasciculatus_F_contig12197:2552..2660Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 2553..2660 -
1622927728.5031354-CDS-E-fasciculatus_F_contig12197:3231..33241622927728.5031354-CDS-E-fasciculatus_F_contig12197:3231..3324Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 3232..3324 -
1695995668.7316427-CDS-E-fasciculatus_F_contig12197:3231..33241695995668.7316427-CDS-E-fasciculatus_F_contig12197:3231..3324Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12197 3232..3324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12197.1704.1

>prot_E-fasciculatus_F_contig12197.1704.1 ID=prot_E-fasciculatus_F_contig12197.1704.1|Name=mRNA_E-fasciculatus_F_contig12197.1704.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=307bp
GGQTSGEHGKCGDGEIGIDEAAARMAGEVAQAQLPPEQPRYPLGNLIYEG
SKLFWRTGESLRIAMHENKEKHCVAISTMLEGESDPFPVLKVDSRLIRVN
GKDAVLERIAEMTEADKGEIQSLPEDARAKLFDKARASVLSDYLLARLKL
IDGGDADGSVTDTQASAAAVSAAARLGLGGVGPDTDPESASAAQAQETPA
GPVEPPGEESLPVTKSDSIFPRGTPTPVVVKLPEDDGGGSGSFLLEDELV
FSEVHTFSKHVSYKDFKRVENEVSEGLKDGHERIANAEKAQRRAHGSLEN
PYHRTSA
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mRNA from alignment at E-fasciculatus_F_contig12197:257..3324-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12197.1704.1 ID=mRNA_E-fasciculatus_F_contig12197.1704.1|Name=mRNA_E-fasciculatus_F_contig12197.1704.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3068bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12197:257..3324- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGCAGACCAGTGGTGAACACGGAAAATGTGGCGACGGGGAAATCGG
CATCGATGAGGCAGCAGCTAGGATGGCCGGTGAGGTAGCACAGGTGGGTG
GATGGGTGGGTGGATGGGTGGCAAGGAAACTTCAACTATACTGGTGGGGC
GTGTCCTTGTAGAGGCACCTTTTTATTTCGGCCGCACCAATTCCATCGGT
CTCCGGAGTAGCACCGCTTCCATCTCTCCTCTTCTATCAACCGTGTGCAC
CCTTGTTTCCAATTGGTATCGCCCCCCGCCGTCCTGATACCATACCGAAC
CAGGTGTGGTATTTGACTATGCTCATGCACTCGCCTACCGTTCGCAACGA
GATTGAATACCTCTCGAGGTACGATGCTCAGATCGCCGAGTACGTTTGCT
TGCACTCACCCCGCACCAAATAAGGGGATTCAAAAAGCTAAATCCTTACG
AGACCGACCCGCGCTCACCCGTAGGCAAGACGACCATGATTTCGAAGTTC
TAAGCAATCATACGCTGGGGTTGTCTAGGAATATGCCGGACTACTTTCAT
TCTTTCCATCGCTGCAGATGTCGTTACGTCCACCGGGGGGGGCGGGGGGC
GTCTTACGTGCTTTCCTCGGACGGTTTGGGTCCAGCCTCCGATTTCGCAC
CTATTGCCCCTCAGGCACAGCTGCCTCCGGAGCAGCCCCGATACCCCCTG
GGAAACCTAATCTACGAGGGATCCAAGCTATTCTGGAGGACCGGAGAGAG
TCTACGAATCGCCATGCACGAGGTGTGAGATTTCCTCGCTGTCGTTTCTC
TTGACATCGCTGTAGTCGCAGACGTGTACATCGTGTACATCGTGGAGACA
AAATATCCGACCCGTACCGCCCGGCCCCGTGAAACCAAGCGTTGCCAACA
CGACTGGAATCATCGAAACCACAGAGCGGATTCTTCACCATGTCCTTTCG
AGTCGATTGCCATCCGCAGGGGACGCTACCCACCATATTGATATCGGATT
TTTGCCAACTCGCTTTTTCGATTCGTGTTTCACCACCAACTTGCCTCGGC
TTTCCAACGTGCTGCGCATCAGAACAAGGAGAAGCATTGCGTAGCGATCT
CCACGATGCTTGAGGGGGAGTCAGACCCCTTCCCGGTGCTGAAGGTGGAC
TCTAGGCTGATTCGTGTCAATGGAAAGGATGCGGTGCTCGAGAGGATTGC
CGAGATGACGGAAGTGAGTTCGGCGGTTGCCACGGTTGAAGTTGTTCGTT
GTGGTCGTACGATGTCTTTGTCAGTTCCCGTCGTGAGATTCGGATGTGAT
GCAAGCTTGACCTCATGGGACAGGAACCAATACTGCGAAATTGGGCTTCT
CTAACACTAACCCAAGCCTGAACAGTCTATGCCCCCAAAACGGCGTCCGA
ATGAGCAAACGGTGCAATCTCCTTCGTCCCACCACGTAGACGGCGTGAAG
AATCACGAATCGGGTCAAGATGTCGATCACGCAGATATTATGTTTGTTGC
ACAAAACATTTCGTCAACTCATGTCGTAGCCGTACGTGACAAAAAAGAAG
GTGCATGCCCCCAACAACCCACACCACACCACAATTTTGGCTTCCAGCTT
GGTAAGGGTGCCATCCCACGTTGTTACAGCGGGAGCGGCCGGAGAACACA
TTTGTGGTTCATGGATAACATAATAAAACCCCTCTGTCACTTTCCTTGTC
TTCGACGATGGAAGGCGGACAAAGGCGAAATTCAAAGCTTGCCAGAGGAC
GCCAGGGCAAAGCTTTTCGACAAAGCCAGGGCTTCCGTTCTCTCGGACTA
CCTGCTGGCCAGACTCAAGCTGATCGATGGGTGAGGTGAATGTCTGGTCG
GATTTGTACTAGGTTTCTCAATAACTGGTGAACCGGTACGATTCAGGAGA
TTATCTTAGGTTGATATCAACTTAGAGGTGATGTAGATGTTTTTCCCCTG
GCTTCGAAGGCGTACTGGACAGTTCGGAGATTGACGTGGAAAAGCGAGTG
GGTGTTGCTCAAGGCCGTACGGCCTCCCTTCCGTACAGGATTTCTCCGTC
ACCCTGAGTCATTTGCCCCTTCCCGCCCAACCCCCCGGTGCTTCTCCCGC
ATCGAACTCTGCCGTGACAAGGAAAGAGGCGACGCGGACGGGAGCGTCAC
AGACACACAGGCCTCCGCTGCGGCGGTATCGGCCGCAGCGCGCTTGGGCT
TAGGTGGAGTGGGCCCAGACACGGATCCGGAATCCGCGTCAGCAGCGCAA
GCTCAAGAGACGCCAGCGGGGCCTGTTGAACCCCCCGGGGAGGAGTCGTT
ACCCGTGACAAAGTCGGACTCGATTTTCCCCAGAGGAACGCCGACGCCAG
TGGTGGTCAAGCTACCTGAGGACGATGGCGGCGGATCGGGGTCCTTCCTG
CTGGAGGATGAGCTGGTTTTCTCCGAAGTGCACACTTTCTCCAAGCACGT
GAGTTTGCGTCCTCTTTCGTCTCGTAGCACTAGTCTATGTGCTAGCTTGA
ACGATGATAGTACTCAAGGTCTTCTCCAGGAGCCGTATCGGGGTGGAAGC
TGTGTACTGGGCCTTTCGGACGAGAGAAACAACGCAGGGCTTCTGGGTGG
CACAAACCCTTCCTCGCACTACTGTAGTAGCACTCGTTGGCTTCTTGAGC
GGCCTTGGCGGATGTTTGGGTTTGTTCAGAGGAGTGGCAGGCGCAAGCTA
AAATGAATCATCAGCTCGACAATTTCTCCGTCATGTAATATCTTGCCTCT
AAGTACATCATATCTCGGCAGGTCATATGATGTGGAATACCGCCCTCGAA
TTTTGTACGCCCAACGGTATACCGTAGTCGCGACAGTTAAGCGTTCATTT
CATTTTCACCATCTTCGAACGAAACGTCTCCTTGTCTCCACTGTTTCGGA
TGCCCTATGGTGGCTGTTTTTTATCAGGTCTCGTACAAGGATTTCAAGCG
TGTCGAGAACGAGGTGTCCGAAGGGCTCAAAGATGGGCATGAAAGGATTG
CAAACGCCGAGAAAGCCCAGCGAAGAGCGCACGGCTCTCTGGAGAACCCC
TATCACAGAACATCGGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12197:257..3324-

>mRNA_E-fasciculatus_F_contig12197.1704.1 ID=mRNA_E-fasciculatus_F_contig12197.1704.1|Name=mRNA_E-fasciculatus_F_contig12197.1704.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1842bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12197:257..3324- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGGGGGCAGACCAGTGGTGAACACGGAAAATGTGGCGACGGGGAAATCGG
CATCGATGAGGCAGCAGCTAGGATGGCCGGTGAGGTAGCACAGGGGGGGC
AGACCAGTGGTGAACACGGAAAATGTGGCGACGGGGAAATCGGCATCGAT
GAGGCAGCAGCTAGGATGGCCGGTGAGGTAGCACAGGCACAGCTGCCTCC
GGAGCAGCCCCGATACCCCCTGGGAAACCTAATCTACGAGGGATCCAAGC
TATTCTGGAGGACCGGAGAGAGTCTACGAATCGCCATGCACGAGGCACAG
CTGCCTCCGGAGCAGCCCCGATACCCCCTGGGAAACCTAATCTACGAGGG
ATCCAAGCTATTCTGGAGGACCGGAGAGAGTCTACGAATCGCCATGCACG
AGAACAAGGAGAAGCATTGCGTAGCGATCTCCACGATGCTTGAGGGGGAG
TCAGACCCCTTCCCGGTGCTGAAGGTGGACTCTAGGCTGATTCGTGTCAA
TGGAAAGGATGCGGTGCTCGAGAGGATTGCCGAGATGACGGAAAACAAGG
AGAAGCATTGCGTAGCGATCTCCACGATGCTTGAGGGGGAGTCAGACCCC
TTCCCGGTGCTGAAGGTGGACTCTAGGCTGATTCGTGTCAATGGAAAGGA
TGCGGTGCTCGAGAGGATTGCCGAGATGACGGAAGCGGACAAAGGCGAAA
TTCAAAGCTTGCCAGAGGACGCCAGGGCAAAGCTTTTCGACAAAGCCAGG
GCTTCCGTTCTCTCGGACTACCTGCTGGCCAGACTCAAGCTGATCGATGG
GCGGACAAAGGCGAAATTCAAAGCTTGCCAGAGGACGCCAGGGCAAAGCT
TTTCGACAAAGCCAGGGCTTCCGTTCTCTCGGACTACCTGCTGGCCAGAC
TCAAGCTGATCGATGGAGGCGACGCGGACGGGAGCGTCACAGACACACAG
GCCTCCGCTGCGGCGGTATCGGCCGCAGCGCGCTTGGGCTTAGGTGGAGT
GGGCCCAGACACGGATCCGGAATCCGCGTCAGCAGCGCAAGCTCAAGAGA
CGCCAGCGGGGCCTGTTGAACCCCCCGGGGAGGAGTCGTTACCCGTGACA
AAGTCGGACTCGATTTTCCCCAGAGGAACGCCGACGCCAGTGGTGGTCAA
GCTACCTGAGGACGATGGCGGCGGATCGGGGTCCTTCCTGCTGGAGGATG
AGCTGGTTTTCTCCGAAGTGCACACTTTCTCCAAGCACAGGCGACGCGGA
CGGGAGCGTCACAGACACACAGGCCTCCGCTGCGGCGGTATCGGCCGCAG
CGCGCTTGGGCTTAGGTGGAGTGGGCCCAGACACGGATCCGGAATCCGCG
TCAGCAGCGCAAGCTCAAGAGACGCCAGCGGGGCCTGTTGAACCCCCCGG
GGAGGAGTCGTTACCCGTGACAAAGTCGGACTCGATTTTCCCCAGAGGAA
CGCCGACGCCAGTGGTGGTCAAGCTACCTGAGGACGATGGCGGCGGATCG
GGGTCCTTCCTGCTGGAGGATGAGCTGGTTTTCTCCGAAGTGCACACTTT
CTCCAAGCACGTCTCGTACAAGGATTTCAAGCGTGTCGAGAACGAGGTGT
CCGAAGGGCTCAAAGATGGGCATGAAAGGATTGCAAACGCCGAGAAAGCC
CAGCGAAGAGCGCACGGCTCTCTGGAGAACCCCTATCACAGAACATCGGC
CGTCTCGTACAAGGATTTCAAGCGTGTCGAGAACGAGGTGTCCGAAGGGC
TCAAAGATGGGCATGAAAGGATTGCAAACGCCGAGAAAGCCCAGCGAAGA
GCGCACGGCTCTCTGGAGAACCCCTATCACAGAACATCGGCC
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