mRNA_E-fasciculatus_F_contig12191.1699.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: A0A6H5JHA1_9PHAE (RB_A domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHA1_9PHAE) HSP 1 Score: 115 bits (287), Expect = 1.620e-28 Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQL 165
QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVN VTPEVTFKRIIEQYKQL
Sbjct: 1050 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTPEVTFKRIIEQYKQL 1104
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: D7G8E5_ECTSI (Putative retinoblastoma n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8E5_ECTSI) HSP 1 Score: 115 bits (287), Expect = 1.620e-28 Identity = 54/55 (98.18%), Postives = 54/55 (98.18%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQL 165
QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVN VTPEVTFKRIIEQYKQL
Sbjct: 898 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNGVTPEVTFKRIIEQYKQL 952
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: A0A067CHR0_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHR0_SAPPC) HSP 1 Score: 83.2 bits (204), Expect = 2.720e-17 Identity = 33/54 (61.11%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQ 162
Q+WT +K C++ E+L+DRH+ HVILCS Y VCKVN V PEVTFKR++E YK+
Sbjct: 635 QIWTSVKECISNHAELLRDRHVDHVILCSFYGVCKVNHVVPEVTFKRVLEAYKR 688
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: A0A2D4CF97_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CF97_PYTIN) HSP 1 Score: 83.2 bits (204), Expect = 2.730e-17 Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQL 165
QVWT IK C++ ++LKDRHL VILCS Y VCKVN V PEVTFKRII+ YK+L
Sbjct: 1238 QVWTAIKECISTHHDLLKDRHLDQVILCSIYGVCKVNHVKPEVTFKRIIDAYKKL 1292
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: A0A1W0A2A8_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2A8_9STRA) HSP 1 Score: 82.8 bits (203), Expect = 3.720e-17 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQ 162
Q+WT +K C++ E+LKDRHL H+ILCS Y VCKVN V PEVTFKR++E YK+
Sbjct: 627 QIWTCVKECISTYQELLKDRHLDHLILCSFYGVCKVNHVLPEVTFKRVLEAYKR 680
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: A0A8K1CKQ6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CKQ6_PYTOL) HSP 1 Score: 82.4 bits (202), Expect = 5.080e-17 Identity = 35/55 (63.64%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQL 165
Q WT IK C++ + ++L+DRHL HV+LCS Y VCKVN V PEVTFKRII+ YK+L
Sbjct: 796 QAWTAIKECLSSQHQLLRDRHLDHVVLCSLYGVCKVNHVKPEVTFKRIIDCYKKL 850
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: A0A485L9V0_9STRA (Aste57867_17626 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L9V0_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 9.460e-17 Identity = 33/55 (60.00%), Postives = 44/55 (80.00%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQL 165
QVWT +K C++ ++L+DRHL H++LCS Y VCKVN V PEVTFKRI++ YK+L
Sbjct: 614 QVWTTVKECISGHHDLLRDRHLDHMLLCSFYGVCKVNHVVPEVTFKRILDAYKRL 668
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: F0WHE8_9STRA (Uncharacterized protein AlNc14C100G6011 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WHE8_9STRA) HSP 1 Score: 81.6 bits (200), Expect = 9.470e-17 Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQL 165
QVWT +K C+ E++KDRH+ H+ILCS Y VCKVN + PEVTF+R+IE YK+L
Sbjct: 816 QVWTAVKECLTYHHELVKDRHVDHIILCSLYGVCKVNLIKPEVTFRRVIEVYKKL 870
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: A0A024GK70_9STRA (Uncharacterized protein n=2 Tax=Albugo candida TaxID=65357 RepID=A0A024GK70_9STRA) HSP 1 Score: 80.5 bits (197), Expect = 2.410e-16 Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQL 165
QVWT +K C+ E++KDRH+ H+ILCS Y VCKVN + PEVTF+R+I+ YK+L
Sbjct: 820 QVWTAVKECLTYHHELVKDRHVDHIILCSLYGVCKVNLIKPEVTFRRVIDVYKKL 874
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Match: A0A1V9YMN7_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YMN7_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 6.150e-16 Identity = 32/54 (59.26%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 1 QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEQYKQ 162
QVWT +K C++ E+L++RHL H+ILCS Y VCKVN V PEVTFKR+ + YK+
Sbjct: 642 QVWTCVKECISNHQELLRNRHLDHLILCSFYGVCKVNRVVPEVTFKRVTDAYKR 695 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12191.1699.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig12191.1699.1 >prot_E-fasciculatus_F_contig12191.1699.1 ID=prot_E-fasciculatus_F_contig12191.1699.1|Name=mRNA_E-fasciculatus_F_contig12191.1699.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=55bp QVWTVIKRCVAQRTEILKDRHLHHVILCSTYSVCKVNSVTPEVTFKRIIEback to top mRNA from alignment at E-fasciculatus_F_contig12191:1401..2144+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig12191.1699.1 ID=mRNA_E-fasciculatus_F_contig12191.1699.1|Name=mRNA_E-fasciculatus_F_contig12191.1699.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=744bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12191:1401..2144+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12191:1401..2144+ >mRNA_E-fasciculatus_F_contig12191.1699.1 ID=mRNA_E-fasciculatus_F_contig12191.1699.1|Name=mRNA_E-fasciculatus_F_contig12191.1699.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=330bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12191:1401..2144+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |