mRNA_E-fasciculatus_F_contig1219.1696.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: D7FIM1_ECTSI (Ubiquitinyl hydrolase 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIM1_ECTSI) HSP 1 Score: 839 bits (2167), Expect = 3.120e-287 Identity = 644/829 (77.68%), Postives = 656/829 (79.13%), Query Frame = 1
Query: 1 DRAARDESNAPVLRRTLAAHKLRAKQKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTTQPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVAPEAAAATASGWDGRPPLPGGRNSGDGHERGCAPPGHPSATGRQRENGVQHPATSAWQSNGNSGGGMFAQSEQANGFSASSSAFPSNRNTPPCATSDGGGGGYNGNETVWTEDRWRGDEEDGAAAKVKVGNATAKNGSMLNGQCLEDLNLAGFVQEVFAGVTRSDVVCTACGNVSCTYERFLEVSLPVRAGEHERXXXXXXXXXXXXXXXXXXXXXXXXXXXXQEAEATQGRVQENGVAGCPVPSSTAGSENGAGVPAKLAAAAILRVADDVASVTEIPNGGGVGVTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNALRPATXXXXXXXXXXXXXQVDPISGRSSPAGSCAGGGGGSCKDNDPSPSEASQATTPSTGRVSPAASATFSDDGSGRFSSAAAAA--LDAGEGRASPTRNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSKSRSSVATGPARSITDCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTATAKXXXXXX---ASAKAEHSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEEEEVLSSEAYILFYFQRGADAAWRPAPPAAAATNGKRRLSVP 2472
DRAARDESNAPVLRRTLAAHKLRAKQKQXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXX XX XXXXXXXXXX VAPEAAAATAS W+GRPPLPGG NSGDGHERGCAPPGHPSATG Q ENG HPATSAWQSNG+SGG MFAQSE ANGFSASSS+FPSNRN P AT+ G GGYN ETVWTEDRW G+EE+GAAA+ KVGN TAKNGSMLNGQCLEDLNLAGFVQEVFAGVTRSDVVCTACG+VSCTYERFLEVSLPVR GEHER XXXXX XXXXXXXXX QEA TQGR+QENGVAGC VPSSTA +ENG GVPAK AAAIL VADDVAS TE+PN G GVT T XXXXXXXXXXXXXXXXX +ALRPAT QVDP SGRSSPAGSCAGGG SCKDNDP PSEASQATTPSTGRVSPA SATFSDDGSGRFSSAAAAA LDAGEGRASPTRNQXXXXXXXXXXXXXXXXXXXXXXXXXXXX SKSRS VATGP RSITDCFARFAARESLTVRM CDSCSA SV KTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAA DT TAK A AKAE SGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEEEEVLSSEAYILFYFQRGADAAWRP PPAAA TNGKRRLSVP
Sbjct: 322 DRAARDESNAPVLRRTLAAHKLRAKQKQXXXXXXXXXXXXXXXXXXXXXSKGQLPSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKXXKXXXXXXXXXXKGEGETAKNSRKRSRSASG--------VAPEAAAATASAWEGRPPLPGGHNSGDGHERGCAPPGHPSATGWQGENGAPHPATSAWQSNGDSGGDMFAQSEHANGFSASSSSFPSNRNALPRATT-AGRGGYNDGETVWTEDRWGGEEEEGAAARAKVGNGTAKNGSMLNGQCLEDLNLAGFVQEVFAGVTRSDVVCTACGHVSCTYERFLEVSLPVRPGEHERRQQQXXXXXREKLXXXXXXXXXK-----QEAGQTQGRMQENGVAGCSVPSSTARTENGGGVPAK--AAAILGVADDVASATEMPNSGSAGVTATSPXXXXXXXXXXXXXXXXXSLPPSVQGAQAPPA-SALRPATPTSSSAQPRQQ--QVDPSSGRSSPAGSCAGGG--SCKDNDPPPSEASQATTPSTGRVSPA-SATFSDDGSGRFSSAAAAAPALDAGEGRASPTRNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSKSRS-VATGPTRSITDCFARFAARESLTVRMACDSCSAASVCKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAAASSSAGGVTSGASPSSSPPL-----DTGTAKGAPPATPAAAGAKAELSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEEEEVLSSEAYILFYFQRGADAAWRPTPPAAA-TNGKRRLSVP 1121
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: A0A835ZI08_9STRA (USP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI08_9STRA) HSP 1 Score: 144 bits (364), Expect = 6.500e-35 Identity = 86/201 (42.79%), Postives = 110/201 (54.73%), Query Frame = 1
Query: 1816 SITDCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTATAKXXXXXXASAKAEHSGD-VPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEEEEVLSSEAYILFYFQRGADAAW 2415
++ C F A E L + CD+CS +KTKQMSFC+LP VLV+H+KRFDA+ DRK+DD V+FP + LDMG +L+GW + E G VP P LPYDL AV+NHSG ++QGHYT V+E W+R DD V EV+E EVL S+ YILFY +R A + W
Sbjct: 109 TLQQCLEGFTAVEELGGGLKCDACSGGGCAKTKQMSFCALPVVLVVHIKRFDALHDRKLDDPVAFPLQ-LDMGPFLSGW---------------------------------------VKGAGGGEGGGQGVPPPRLPYDLFAVINHSGSLSQGHYTCHVQEGQAWYRCDDALVAEVQESEVLDSQGYILFY-RRHATSNW 268
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: A0A4D9D8F2_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8F2_9STRA) HSP 1 Score: 118 bits (295), Expect = 2.290e-23 Identity = 76/221 (34.39%), Postives = 109/221 (49.32%), Query Frame = 1
Query: 1816 SITDCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTAT----AKXXXXXXASAKAEHSGDVPAPSLPYDLLAVVNHSGG-MAQGHYTAFV-------KEIGR-------WFRFDDTWVHEVEEEEVLSSEAYILFYFQRGADAAWRP 2421
+++ C + + E+L+ C SC ATS S +KQ++ LP V + H+KRFDA + RKI+ FV +P +GL+MG Y+ W A A + + ++ G V +P +PYDL AVV H G + QGHY AFV KE GR W+ +DTWV V E+VL+++AY+LFY +RG W P
Sbjct: 599 TLSHCLDAYTSLETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMGPYMRAWRNAEMRRGGTTAKRKEESLGNGNGGERCEKRARGGDGSPQTEWSHGRREGKNGGSV-SPEIPYDLFAVVEHMGASLQQGHYKAFVQEGTEGEKEGGREGGRAPAWYVCNDTWVQAVTMEKVLNAQAYLLFYIRRG----WNP 814
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: A0A7S1DA33_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DA33_CYCTE) HSP 1 Score: 110 bits (274), Expect = 1.140e-22 Identity = 74/200 (37.00%), Postives = 94/200 (47.00%), Query Frame = 1
Query: 1801 TGPARSITDCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTATAKXXXXXXASAKAEHSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEEEEVLSSE-AYILFYFQR 2397
T ++ C F A E L + C C + ++ KQ +F LPRVL LHLKRFDA +RKI +VSFPAR LDMG L W + DTATA A P + YDL+ VNH G + QGHY + V G+W+ +D V +E EVL S+ AY+LFY QR
Sbjct: 120 TSRKMNVQHCLYHFTAPEVLADPIECPYCKRKTPTR-KQQTFARLPRVLCLHLKRFDAAKNRKISAYVSFPARSLDMGPLLPHWRESSVHNEN--------------------DTATADSKKHLSADVWYNTESRRGCPQILYDLVGTVNHIGTLNQGHYVSNVMVKGKWYHCNDAHVVLSDEAEVLKSDGAYLLFYLQR 298
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: F0YML3_AURAN (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YML3_AURAN) HSP 1 Score: 110 bits (276), Expect = 1.580e-21 Identity = 73/208 (35.10%), Postives = 101/208 (48.56%), Query Frame = 1
Query: 1783 SRSSVATGPARSIT--DCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARG-LDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTATAKXXXXXXASAKAEHSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEEEEVLSSEAYILFYFQR 2397
+R +V PAR + DC A F + E L C C A +V + KQ++ +LP VL++HLKRFDA+ RK+ + V FP LD+G +L+ W AKA + +P P L Y+L AVVNH G +GHYT+FVK+ G WF DD + V+ E V SE Y+LFY ++
Sbjct: 373 ARQNVDAEPARPLCLEDCLAHFTSVEVLVDAHICSGCGA-AVKREKQLTIEALPNVLIVHLKRFDALGSRKVTEVVDFPTDSPLDLGPFLSKW------------------------------------------RAKANNKSSLPTPHL-YELNAVVNHHGDANKGHYTSFVKDGGLWFLCDDHSIKHVDLETVKHSEGYLLFYIRK 536
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: W7TQ76_9STRA (Ubiquitin carboxyl-terminal hydrolase 31 n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQ76_9STRA) HSP 1 Score: 108 bits (271), Expect = 1.860e-21 Identity = 72/221 (32.58%), Postives = 104/221 (47.06%), Query Frame = 1
Query: 1816 SITDCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTAT----AKXXXXXXASAKAEHSGDVPAPSLPYDLLAVVNHSGG-MAQGHYTAFVKE--------------IGRWFRFDDTWVHEVEEEEVLSSEAYILFYFQRGADAAWRP 2421
+++ C + +RE+L+ C SC ATS S +KQ++ LP V + H+KRFDA + RKI+ FV +P +GL+M Y+ W A A + + + G V +P + YDL AVV H G + QGHY AFV+E W +DTWV V E+VL+++AY+LFY +RG W P
Sbjct: 195 TLSHCLDAYTSRETLSCPYKCASCGATSSSCSKQLTLHRLPNVFIFHMKRFDAFSARKIEKFVRYPPKGLNMAPYMHAWCNAEMRREGTTAKRKEESLGNENGGDRRGKRAREGEGSPQTGWSHGRREGMNGGSV-SPEILYDLFAVVEHMGASLQQGHYKAFVQEGTEGXXXXXXXXXXAPAWCVCNDTWVQAVSIEKVLNAQAYLLFYIRRG----WSP 410
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: B8BUX4_THAPS (USP domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BUX4_THAPS) HSP 1 Score: 109 bits (272), Expect = 2.160e-20 Identity = 73/197 (37.06%), Postives = 98/197 (49.75%), Query Frame = 1
Query: 1816 SITDCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTATAKXXXXXXASAKAEHSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEE----EEVLSSE-AYILFYF 2391
SI C F E+L + C SC++ + + TKQ F SLP+VL LHLKRFDA A RKI + V+FPA GLDMGK+L W A D+ +P + YDL++ VNH+G + QGHY A VK+ W+ +D +V E +EVL++E AY+LFYF
Sbjct: 808 SIGACLEHFTHPETLADLVYCPSCNSKTTT-TKQHDFASLPKVLCLHLKRFDAGAHRKITEHVAFPAFGLDMGKHLPQW-------------------------------------CEKIPDANPNDGEDISSPQVLYDLISTVNHNGSLHQGHYVANVKKGDHWYHSNDEFVCNAGEGNGEKEVLAAEGAYLLFYF 966
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: A0A1E7F5K9_9STRA (Cysteine proteinase n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5K9_9STRA) HSP 1 Score: 98.6 bits (244), Expect = 7.760e-20 Identity = 67/195 (34.36%), Postives = 90/195 (46.15%), Query Frame = 1
Query: 1816 SITDCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTATAKXXXXXXASAKAEHSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEVEEEEVLSSE-AYILFYFQR 2397
S+ C F E L + C+SC + +K KQ +F LP++L LHLKRFDA ++KID FVSFP+ GL+MG L+ W ++ SAK P + YDL VNH G M GHY A VK W+ +D + +EE V +E AY+LFY +R
Sbjct: 26 SVETCLEHFVLPEKLGDLVFCNSCRKKTRTK-KQHTFAQLPKILCLHLKRFDAARNKKIDHFVSFPSYGLNMGGLLSHWCEVTRLE------------------------SSGLDGKKSLPSAK---------PEILYDLFGTVNHIGNMQSGHYVANVKVDDAWYHCNDQHISYAKEETVTKAEGAYVLFYIRR 186
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: A0A7S2Q1U2_9STRA (Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2Q1U2_9STRA) HSP 1 Score: 104 bits (259), Expect = 5.710e-19 Identity = 73/211 (34.60%), Postives = 99/211 (46.92%), Query Frame = 1
Query: 1783 SRSSVATGPARS-ITDCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTATAKXXXXXXASAKAEHSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIGRWFRFDDTWVHEV-----EEEEVLSSEAYILFYFQR 2397
SR + T S IT C F E+L+ + C SC S + KQ +F LPRV LHLKRFDA ++KI DFVS+PA LDMGKYL W + + + D +P + YDL A VNH G + QGHYT+ VK W+ +D +V + E+E +L+ AY+LFY ++
Sbjct: 812 SREKMTTRRETSNITACLKDFTDPETLSDPIYCPSCKRKSKT-LKQHTFAKLPRVFCLHLKRFDAENNKKISDFVSYPASNLDMGKYLPHW---------------------------------CEKVVSTESKDSDSNEIDAESPKVLYDLFATVNHRGTLNQGHYTSNVKCGNHWYHCNDAFVCDAGEGNGEKEVLLAEGAYMLFYLKK 988
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Match: A0A7S2LUC6_9STRA (Ubiquitinyl hydrolase 1 n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LUC6_9STRA) HSP 1 Score: 100 bits (250), Expect = 6.910e-18 Identity = 71/202 (35.15%), Postives = 93/202 (46.04%), Query Frame = 1
Query: 1816 SITDCFARFAARESLTVRMTCDSCSATSVSKTKQMSFCSLPRVLVLHLKRFDAMADRKIDDFVSFPARGLDMGKYLTGWPAAXXXXXXXXXXXXXXXXXXXXXXXXXXDTATAKXXXXXXASA-KAEHSGDVPAPSLPYDLLAVVNHSGGMAQGHYTAFVKEIG--RWFRFDDTWVHEV-----EEEEVLSSEAYILFYFQR 2397
++ C F E L ++ C SC S KQ++F LPRVL LHLKRFDA ++K+ D VSFPA LDMG +++ W T+ A + E S V P L YDL +NH G M QGHYTA VK G W+ +D V+ E+E + S E Y+LFY +R
Sbjct: 853 TLRHCLESFCRPEQLAEKVQCSSCLV-KTSTQKQLTFAKLPRVLCLHLKRFDARTNKKLSDPVSFPAE-LDMGPHVSKW------------------------CEVGRGAVTSSTESVDVAEHDQIEPSNTVSCPKLLYDLFGTINHRGSMNQGHYTANVKVHGSNHWYHCNDEGVYHAGEGDGEKEVLASDEPYMLFYIRR 1028 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1219.1696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1219.1696.1 >prot_E-fasciculatus_F_contig1219.1696.1 ID=prot_E-fasciculatus_F_contig1219.1696.1|Name=mRNA_E-fasciculatus_F_contig1219.1696.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=620bp MFAQSEQANGFSASSSAFPSNRNTPPCATSDGGGGGYNGNETVWTEDRWRback to top mRNA from alignment at E-fasciculatus_F_contig1219:3..3330+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1219.1696.1 ID=mRNA_E-fasciculatus_F_contig1219.1696.1|Name=mRNA_E-fasciculatus_F_contig1219.1696.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3328bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1219:3..3330+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1219:3..3330+ >mRNA_E-fasciculatus_F_contig1219.1696.1 ID=mRNA_E-fasciculatus_F_contig1219.1696.1|Name=mRNA_E-fasciculatus_F_contig1219.1696.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3720bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1219:3..3330+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |