mRNA_E-fasciculatus_F_contig12176.1692.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12176.1692.1
Unique NamemRNA_E-fasciculatus_F_contig12176.1692.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12176.1692.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12176contigE-fasciculatus_F_contig12176:1463..1828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size303
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927727.061388-UTR-E-fasciculatus_F_contig12176:1462..15251622927727.061388-UTR-E-fasciculatus_F_contig12176:1462..1525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12176 1463..1525 +
1695995668.0299423-UTR-E-fasciculatus_F_contig12176:1462..15251695995668.0299423-UTR-E-fasciculatus_F_contig12176:1462..1525Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12176 1463..1525 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927727.0782979-CDS-E-fasciculatus_F_contig12176:1525..18281622927727.0782979-CDS-E-fasciculatus_F_contig12176:1525..1828Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12176 1526..1828 +
1695995668.044583-CDS-E-fasciculatus_F_contig12176:1525..18281695995668.044583-CDS-E-fasciculatus_F_contig12176:1525..1828Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12176 1526..1828 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12176.1692.1prot_E-fasciculatus_F_contig12176.1692.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12176 1526..1828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12176.1692.1

>prot_E-fasciculatus_F_contig12176.1692.1 ID=prot_E-fasciculatus_F_contig12176.1692.1|Name=mRNA_E-fasciculatus_F_contig12176.1692.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=101bp
MLPANTTHGHWGGRSTGARRDWPKWPWLQTPTAHVPPQRRKIRRHSAVAV
CKCATSRRGYQPENSSTTAVHGEFSHGHFFGNCCLVFPSSHARVGMSAPV
I
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mRNA from alignment at E-fasciculatus_F_contig12176:1463..1828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12176.1692.1 ID=mRNA_E-fasciculatus_F_contig12176.1692.1|Name=mRNA_E-fasciculatus_F_contig12176.1692.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=366bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12176:1463..1828+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TGTGTGCACATTCATTCATCAGACGGAGGAGTTCTACTCCAAGAGGTAGT
ACAGAGTAGATGAATGCTGCCCGCCAACACAACACACGGGCACTGGGGGG
GTAGGTCGACAGGAGCAAGAAGGGACTGGCCCAAATGGCCATGGCTACAG
ACACCAACAGCACACGTCCCACCGCAGCGACGAAAAATTCGCAGACATTC
AGCGGTTGCAGTATGTAAGTGTGCGACATCAAGAAGAGGATACCAACCGG
AGAACAGCAGTACTACTGCTGTACACGGAGAGTTCTCCCATGGTCATTTT
TTTGGGAATTGTTGCCTCGTTTTTCCCTCCTCCCACGCACGCGTCGGCAT
GTCAGCGCCCGTCATA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12176:1463..1828+

>mRNA_E-fasciculatus_F_contig12176.1692.1 ID=mRNA_E-fasciculatus_F_contig12176.1692.1|Name=mRNA_E-fasciculatus_F_contig12176.1692.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=606bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12176:1463..1828+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGCCCGCCAACACAACACACGGGCACTGGGGGGGTAGGTCGACAGG
AGCAAGAAGGGACTGGCCCAAATGGCCATGGCTACAGACACCAACAGCAC
ACGTCCCACCGCAGCGACGAAAAATTCGCAGACATTCAGCGGTTGCAGTA
TGTAAGTGTGCGACATCAAGAAGAGGATACCAACCGGAGAACAGCAGTAC
TACTGCTGTACACGGAGAGTTCTCCCATGGTCATTTTTTTGGGAATTGTT
GCCTCGTTTTTCCCTCCTCCCACGCACGCGTCGGCATGTCAGCGCCCGTC
ATAATGCTGCCCGCCAACACAACACACGGGCACTGGGGGGGTAGGTCGAC
AGGAGCAAGAAGGGACTGGCCCAAATGGCCATGGCTACAGACACCAACAG
CACACGTCCCACCGCAGCGACGAAAAATTCGCAGACATTCAGCGGTTGCA
GTATGTAAGTGTGCGACATCAAGAAGAGGATACCAACCGGAGAACAGCAG
TACTACTGCTGTACACGGAGAGTTCTCCCATGGTCATTTTTTTGGGAATT
GTTGCCTCGTTTTTCCCTCCTCCCACGCACGCGTCGGCATGTCAGCGCCC
GTCATA
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