mRNA_E-fasciculatus_F_contig12174.1691.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12174.1691.1
Unique NamemRNA_E-fasciculatus_F_contig12174.1691.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12174.1691.1 vs. uniprot
Match: A0A6H5JMQ2_9PHAE (ORC3_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ2_9PHAE)

HSP 1 Score: 152 bits (383), Expect = 3.380e-41
Identity = 71/75 (94.67%), Postives = 73/75 (97.33%), Query Frame = 1 
Query:    7 ARVGFPMDRLSPSAARQLSPENFHFPSSVECVDVLYEKLFVQRRLPVWMGGRLLSWMKATFDDAHLSLGMFTRQV 231
            ARVGFPMDRLSPSA RQLSPENFHFPSSVECVD+LYEKLFVQRRLPVWMGGRLLSWMKATFDD HLSLGMF+RQV
Sbjct:  324 ARVGFPMDRLSPSAVRQLSPENFHFPSSVECVDLLYEKLFVQRRLPVWMGGRLLSWMKATFDDTHLSLGMFSRQV 398
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BLAST of mRNA_E-fasciculatus_F_contig12174.1691.1 vs. uniprot
Match: D8LJC7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC7_ECTSI)

HSP 1 Score: 147 bits (372), Expect = 1.410e-39
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 1 
Query:    7 ARVGFPMDRLSPSAARQLSPENFHFPSSVECVDVLYEKLFVQRRLPVWMGGRLLSWMKATFDDAHLSLGMFTRQV 231
            ARVGFPMDRLSPSA RQLSPENF+FPSSVEC+D+LYEKLFVQRRLPVWMGGRLLSWMK TFDD HLSLGMF+RQV
Sbjct:  323 ARVGFPMDRLSPSAVRQLSPENFYFPSSVECIDLLYEKLFVQRRLPVWMGGRLLSWMKTTFDDTHLSLGMFSRQV 397
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12174.1691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JMQ2_9PHAE3.380e-4194.67ORC3_N domain-containing protein n=1 Tax=Ectocarpu... [more]
D8LJC7_ECTSI1.410e-3990.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12174contigE-fasciculatus_F_contig12174:2582..3955 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size231
Cds size207
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12174.1691.1prot_E-fasciculatus_F_contig12174.1691.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12174 2606..3955 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.9744492-UTR-E-fasciculatus_F_contig12174:2581..26051622927726.9744492-UTR-E-fasciculatus_F_contig12174:2581..2605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12174 2582..2605 +
1695995667.9979753-UTR-E-fasciculatus_F_contig12174:2581..26051695995667.9979753-UTR-E-fasciculatus_F_contig12174:2581..2605Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12174 2582..2605 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.993479-CDS-E-fasciculatus_F_contig12174:2605..27131622927726.993479-CDS-E-fasciculatus_F_contig12174:2605..2713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12174 2606..2713 +
1695995668.010766-CDS-E-fasciculatus_F_contig12174:2605..27131695995668.010766-CDS-E-fasciculatus_F_contig12174:2605..2713Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12174 2606..2713 +
1622927727.0110314-CDS-E-fasciculatus_F_contig12174:3856..39551622927727.0110314-CDS-E-fasciculatus_F_contig12174:3856..3955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12174 3857..3955 +
1695995668.019868-CDS-E-fasciculatus_F_contig12174:3856..39551695995668.019868-CDS-E-fasciculatus_F_contig12174:3856..3955Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12174 3857..3955 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12174.1691.1

>prot_E-fasciculatus_F_contig12174.1691.1 ID=prot_E-fasciculatus_F_contig12174.1691.1|Name=mRNA_E-fasciculatus_F_contig12174.1691.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=69bp
MDRLSPSAARQLSPENFHFPSSVECVDVLYEKLFVQRRLPVWMGGRLLSW
MKATFDDAHLSLGMFTRQV
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mRNA from alignment at E-fasciculatus_F_contig12174:2582..3955+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12174.1691.1 ID=mRNA_E-fasciculatus_F_contig12174.1691.1|Name=mRNA_E-fasciculatus_F_contig12174.1691.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1374bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12174:2582..3955+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACGCAGGCACGCGTGGGGTTCCCGATGGACAGGCTCTCCCCGTCGGCGGC
GAGGCAGCTATCTCCGGAGAACTTCCACTTCCCGTCGTCCGTCGAGTGCG
TCGACGTGCTCTACGAGAAGCTATTCGTCCAGGTAAGGTACAGTGCTGTA
CTGTCAGGCGGGATACTGTACCCTTTTTTGTCTTGCAAGCTATTCGTCCA
GGTGAGGTACAGTGCTGGCTGTACTATACTGTATTTTTTTTTTCGTTCTC
TATGAGAAGCTATTCGTCCAGGTAAGGTACAGCACTGTACTGTCAGGCGG
GATAGTGTACCTCTGTTGGTGCTCTACGAGAAGCTATTCTTCCAGGTAAG
GTACAGTACTGTACTGTCAGGCGGGATACTGTACCCTTTTTTGTCTTGCA
AGCTATTCGTCCAGGTGAGGTACAGTACTGTACTGCCAGGCGGGATACTG
TACCTTTTTATTGTCTTGCAAGCTGTTCGTCCAGGTACTGTGCTGTGTTG
TAAGGCGGGATACTGTACCTCTGTTGGTGCTCTATGAGAAGTTATTCGTC
AGGGTACACTACAGTGCTGTACTGTAAGGCAGGATACCTTTTTTTGTTGT
TCTCCACCAGAAGCTATTCGTACAGGCACAGTACAGGACTGTACTGTAGG
GCGGGGTACTGTACCTTGTTTTGTCTTGCTCTATGAGAAGCTCTTCGTCG
CGAAGTGGGGTACCTTTTTTGTCGTGCTCTATGAGAAGCGCTTCGGCGCG
AAGTGGGAGGGGTCGGGATACCGTACCTTTTTTGGTCGTGTAGTCGGTGT
TCGATGCTAATTTGCTGCTACAGTGTACGCACTCGTCCATTGATGTTTTT
TTGCCGACCGTTTCGAATCGATAGTACTGTTCCATGCAGATAGGTGTATA
CGGGTCGCTTGTTGATTTGAATGAAGGCGAAAGAAGTAGTACAATATTTT
GCTGATGTTCAACCCCGTTCGTCTTGACGGAATTAAACCGTGGAAAAACC
GTCCCGTGGTGCATATAGCGCTGGCTACCGGTGTGAATGGGAGGCCGCTC
GCCTGCTCTCTTGGATGAAGGCGAAAACAGTCTTGCTTATGTGTGTTTTT
CATGGAAATAACCGTGGAAAAACCGTCCCGTGGTGCATATAGCGCCGGCT
GCCGGTGTGAAATTGGGAGGCCGCTCGCCTGCTCTCTTTGGATGAAGGCG
AAAACGGTCTGTCTTATGTGTGTCTTCATGGAATAACCGTGTGGAAAAAC
CGTCCCGTGGTACGCATACGTACAGCGCCGGCTGCCGGTGTGGATGGGCG
GCCGCTTGCTCTCTTGGATGAAGGCTACCTTCGACGACGCCCACCTGTCT
CTGGGGATGTTCACCCGGCAGGTA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12174:2582..3955+

>mRNA_E-fasciculatus_F_contig12174.1691.1 ID=mRNA_E-fasciculatus_F_contig12174.1691.1|Name=mRNA_E-fasciculatus_F_contig12174.1691.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=414bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12174:2582..3955+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGACAGGCTCTCCCCGTCGGCGGCGAGGCAGCTATCTCCGGAGAACTT
CCACTTCCCGTCGTCCGTCGAGTGCGTCGACGTGCTCTACGAGAAGCTAT
TCGTCCAGATGGACAGGCTCTCCCCGTCGGCGGCGAGGCAGCTATCTCCG
GAGAACTTCCACTTCCCGTCGTCCGTCGAGTGCGTCGACGTGCTCTACGA
GAAGCTATTCGTCCAGCGCCGGCTGCCGGTGTGGATGGGCGGCCGCTTGC
TCTCTTGGATGAAGGCTACCTTCGACGACGCCCACCTGTCTCTGGGGATG
TTCACCCGGCAGGTACGCCGGCTGCCGGTGTGGATGGGCGGCCGCTTGCT
CTCTTGGATGAAGGCTACCTTCGACGACGCCCACCTGTCTCTGGGGATGT
TCACCCGGCAGGTA
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