mRNA_E-fasciculatus_F_contig10167.169.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: D7G847_ECTSI (NTP_transf_2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G847_ECTSI) HSP 1 Score: 475 bits (1222), Expect = 3.920e-147 Identity = 289/389 (74.29%), Postives = 294/389 (75.58%), Query Frame = 1
Query: 157 PLAEERVAHYADGNXXXXXXXXXXX----VGGLCATRSSDSGSSGGSASGYPD-EPLANVSSAGGGAVSSACGSPASVDRAGGTSDDVENMEGAKSESAPITVGSIGEHQQPNPPVADGSDDGRNPXXXXXXXXXXXXXXXXXXXXXXXQPAGGVSTKGPGDVNDQAALADAAXXXXXXXXXXXGSPGESVVGGAARAPTPPVGVHPVQAPQXXXXXXXXXXXXXXXXPRVHHPGSAMLPSAAQQAQYNLGMNAELFNMKHMEINLSQEEVDRADLSGMTPGEVLVRFLAFFGRQFDPTRVGISVGRGAISNPFALTPTVDPRTGMPVMEAHVVIEDPLDRDQNVARSCFGFPQVQWLFGQCLSVLQERGSDMAEFDRDADLLQMLLYY 1308
PL EERV Y +G+XXXXXXXXXXX VGGLCATRSSDSGSSGGSASGYP EPLANVSSAGG AVSSACGSPAS DRAGG SDD ENMEGAKSESAPITVGSI EHQQPNPPV DGS DGR+P X QPAGGVSTKGPGDVNDQAALADAA GSP ESVVGGA RAPTPP QAQYNLGMNAELFNMKHMEINLSQEEVDRADLSGMTPGEVLVRFLAFFGRQFDPTRVGISVGRGAISNPFALTP+VDPRTGMPVMEAHVVIEDPLDRDQNVARSCFGFPQVQWLFGQ LSVLQERG+DMAEFDRDADLLQMLLYY
Sbjct: 1749 PLVEERVGQYVEGDXXXXXXXXXXXXXXXVGGLCATRSSDSGSSGGSASGYPGHEPLANVSSAGGDAVSSACGSPASADRAGGMSDDAENMEGAKSESAPITVGSIAEHQQPNPPVTDGSYDGRSPPLPXPPLNTAPSQREQSSSPPAAQPAGGVSTKGPGDVNDQAALADAAASAASANSS--GSPDESVVGGA-RAPTPP------------------------------------------QAQYNLGMNAELFNMKHMEINLSQEEVDRADLSGMTPGEVLVRFLAFFGRQFDPTRVGISVGRGAISNPFALTPSVDPRTGMPVMEAHVVIEDPLDRDQNVARSCFGFPQVQWLFGQYLSVLQERGADMAEFDRDADLLQMLLYY 2092
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: A0A835Z4K4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4K4_9STRA) HSP 1 Score: 120 bits (300), Expect = 8.690e-25 Identity = 72/166 (43.37%), Postives = 98/166 (59.04%), Query Frame = 1
Query: 841 PGSAMLPS--AAQQAQYNLGMNAELFNMKHMEINLSQEEVDRADLSGMTPGEVLVRFLAFFGRQFDPTRVGISVGRGAISNPFALTPTVDPRTGMPVMEAHVVIEDPLDRDQN--------VARSCFGFPQVQWLFGQCLSVLQERGSDMAEFDRDADLLQMLLYY 1308
PG+ LP+ AA A +LG + F + + +++ E++ DLS MTPG L++FLAF+ R FDP GISVGRG + +PF L VD TG+ A + IEDPLD +N V+ SCF FP+VQWLF QCL+ L+ RG + + D +LLQ L Y
Sbjct: 1793 PGAGPLPTMAAAVAAANHLGPPRDAFPLDPPD--MTEAELEAEDLSDMTPGACLLKFLAFYSRAFDPLSYGISVGRGRLGSPFPLDLPVDAATGLRAAAA-LTIEDPLDMQRNDPSATIRNVSHSCFRFPEVQWLFSQCLAELEVRGPEKLRRNPDTNLLQDLCQY 1955
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: A0A7S1YUY2_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YUY2_9STRA) HSP 1 Score: 59.7 bits (143), Expect = 1.350e-5 Identity = 44/121 (36.36%), Postives = 66/121 (54.55%), Query Frame = 1
Query: 976 MTPGEVLVRFLAFFGRQFDPTRVGISVGRGAIS---NPFA---LTP--------TVDPRTGMPVMEAHVVIEDPLD--RDQNVARSCFGFPQVQWLFGQC---LSVLQERGSDMAEFDRDA 1281
+T G++L+ FL F+G+ FD I VG GA N +A L+P T+DP TGM ++ +V+ DPL+ NVA+SCF + ++W+F QC LS ER + DR++
Sbjct: 2143 ITAGKLLMHFLLFYGQYFDAQTTSIDVG-GANHPDYNRYANHQLSPFMPRRAGGTIDPITGMYTVDP-IVVYDPLEGAEGNNVAKSCFAWSSIRWVFAQCYMTLSSAVERSGGGSSRDRNS 2261
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: A0A7S2I5M6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I5M6_9STRA) HSP 1 Score: 54.3 bits (129), Expect = 3.900e-5 Identity = 37/101 (36.63%), Postives = 55/101 (54.46%), Query Frame = 1
Query: 988 EVLVRFLAFFGRQFDPTRVGISVGRGAISNP-------FALTP--------TVDPRTGMPVMEAHVVIEDPLD--RDQNVARSCFGFPQVQWLFGQCLSVL 1239
++L+ FL F+G+ FD I VG GA ++P + L P T+DP TGM ++ +V+ DPL+ NVARSCF + ++W+F QC L
Sbjct: 1 KLLMHFLLFYGQYFDSQSTAIDVG-GA-NHPEYNRYTHYQLPPFMPRRPGGTIDPVTGMFTVDP-IVVYDPLEGAEGNNVARSCFAWGSIRWVFAQCYMTL 98
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Match: A0A7S2UCB2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UCB2_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 9.160e-5 Identity = 41/113 (36.28%), Postives = 61/113 (53.98%), Query Frame = 1
Query: 985 GEVLVRFLAFFGRQFDP--TRVGISVGRGAISNPFA-------LTP--------TVDPRTGMPVMEAHVVIEDPLD--RDQNVARSCFGFPQVQWLFGQC---LSVLQERGSD 1257
G++L+ FL F+G+ FD T + +S N FA L+P T+DP TG+ ++ +V+ DPL + NVARSCF + ++W+F QC LS + ERG D
Sbjct: 1950 GKLLMHFLLFYGQHFDAQSTSIDVSGTHHPDCNYFAPSELQDHLSPFISRKAGGTIDPITGVFTVDP-IVVYDPLAGCENNNVARSCFAWSSIRWVFSQCYMTLSSVVERGGD 2061 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10167.169.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10167.169.1 >prot_E-fasciculatus_F_contig10167.169.1 ID=prot_E-fasciculatus_F_contig10167.169.1|Name=mRNA_E-fasciculatus_F_contig10167.169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=433bp MGPPAPPPPPSPVPPPTLVQAAAPAHVVVGSGHEMGAPGGGGGDEQVAPLback to top mRNA from alignment at E-fasciculatus_F_contig10167:1533..4913+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig10167.169.1 ID=mRNA_E-fasciculatus_F_contig10167.169.1|Name=mRNA_E-fasciculatus_F_contig10167.169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3381bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10167:1533..4913+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10167:1533..4913+ >mRNA_E-fasciculatus_F_contig10167.169.1 ID=mRNA_E-fasciculatus_F_contig10167.169.1|Name=mRNA_E-fasciculatus_F_contig10167.169.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2598bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10167:1533..4913+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |