mRNA_E-fasciculatus_F_contig12172.1689.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig12172.1689.1
Unique NamemRNA_E-fasciculatus_F_contig12172.1689.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig12172.1689.1 vs. uniprot
Match: A0A6H5KYK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK9_9PHAE)

HSP 1 Score: 427 bits (1099), Expect = 2.760e-124
Identity = 303/376 (80.59%), Postives = 312/376 (82.98%), Query Frame = 2 
Query:  215 LDGLASSSFASSHYNDVFGDSSSVESGQTPRREDRTVENYFSEQPSGRNLLHVLPHQQQGVTTPRDXXXXXXRQSQASPGLGPYREQPSGRGLVHDPSSSDVDXXXXXXXXXXXXXXXXXXEMXXXXX-SEGSSAWNDTDAXXXXXXXXXXXXXXXXXXAAPQFT-TAARSAYSSGGTVESGRHGTSPVVREVDVYDEEVSSEASMSSAGTEAASRVQSEMTGT--YDHDTAAGGSTASFQAGGG--GRGDRRTGSGTSGAPSPGQRMLGYQQQYGSSRSSIVSRVAGAESEMGSHRLVPLQNSWQNSPGPAGGAAAGGGIERVLSGETTDSSILEQQARDRHSSGAQQEDGDFGRVWLADRAHARQFDDADEDRG 1324
            LDGLASSSFASSHYN+V+GDSSSVES QT RRED TVENYFSEQPSGRNLLHVL HQ+ G  TPRD      RQSQ  PG+G YRE       VHDPS S +D XXXXXXXXXXXXXXXXX  XXXX  S+ SSAWNDTDA  XXXXXXXXXXXXXXXX       TAARSAYSSGGTV+SGRHGTSPVVREVDVYD  VSSEASMSSAGTEAASRVQSEMT T  YDHDTAAGGSTASFQ GGG  GR  RR G G    PSP Q MLGYQQ YGSSRSSIVSRVAGAESEMGSHRLVP Q+SWQNSPGP GGA+A GGIERVLSGETTDSSILEQQARDRH SG QQEDGDFGRVWLADRAHARQFDDADEDRG
Sbjct: 2157 LDGLASSSFASSHYNEVYGDSSSVES-QTQRREDPTVENYFSEQPSGRNLLHVLTHQR-GERTPRDEG----RQSQVGPGIGAYREXXXXXXXVHDPSRSKIDGXXXXXXXXXXXXXXXXXXXXXXXSESDRSSAWNDTDAQSXXXXXXXXXXXXXXXXXXXXXXXTAARSAYSSGGTVQSGRHGTSPVVREVDVYDG-VSSEASMSSAGTEAASRVQSEMTSTSTYDHDTAAGGSTASFQGGGGDSGRAHRRPGPGVRVPPSPSQPMLGYQQGYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGASAEGGIERVLSGETTDSSILEQQARDRHGSG-QQEDGDFGRVWLADRAHARQFDDADEDRG 2524
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BLAST of mRNA_E-fasciculatus_F_contig12172.1689.1 vs. uniprot
Match: D8LG76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG76_ECTSI)

HSP 1 Score: 347 bits (890), Expect = 6.070e-108
Identity = 220/259 (84.94%), Postives = 225/259 (86.87%), Query Frame = 2 
Query:  581 MXXXXXSEGSSAWNDTDAXXXXXXXXXXXXXXXXXXAAPQFT------TAARSAYSSGGTVESGRHGTSPVVREVDVYDEEVSSEASMSSAGTEAASRVQSEMTGTYDHDTAAGGSTASFQAGGG--GRGDRRTGSGTSGAPSPGQRMLGYQQQYGSSRSSIVSRVAGAESEMGSHRLVPLQNSWQNSPGPAGGAAAGGGIERVLSGETTDSSILEQQARDRHSSGAQQEDGDFGRVWLADRAHARQFDDADEDRG*KG 1333
            M     S+ SSAWNDTDA XXXXXXXXXXXXXXXXX            TAARSAYSSGGTV+SGRHGTSPVVREVDVYD+ VSSEASMSSAGTEAASRVQSE+TGTYDHDTAAGGST SFQAGGG  GRG RR GSG SGAPSPGQRMLGYQQ YGSSRSSIVSRVAGAESEMGSHRLVP Q+SWQNSPGP GGA AGGGIERVLSGETTDSSILEQQARDRH SG QQEDGDFGRVWLADRAHARQFDDADEDRG  G
Sbjct:   28 MSSPSESDRSSAWNDTDAQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAARSAYSSGGTVQSGRHGTSPVVREVDVYDD-VSSEASMSSAGTEAASRVQSEVTGTYDHDTAAGGSTTSFQAGGGDSGRGHRRPGSGASGAPSPGQRMLGYQQAYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGALAGGGIERVLSGETTDSSILEQQARDRHGSG-QQEDGDFGRVWLADRAHARQFDDADEDRGRSG 284
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig12172.1689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYK9_9PHAE2.760e-12480.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG76_ECTSI6.070e-10884.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig12172contigE-fasciculatus_F_contig12172:1139..4022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_004020.1
Exons1
Model size2884
Cds size1227
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig12172.1689.1prot_E-fasciculatus_F_contig12172.1689.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig12172 1239..2465 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.7781734-UTR-E-fasciculatus_F_contig12172:1138..12381622927726.7781734-UTR-E-fasciculatus_F_contig12172:1138..1238Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12172 1139..1238 +
1695995667.8962376-UTR-E-fasciculatus_F_contig12172:1138..12381695995667.8962376-UTR-E-fasciculatus_F_contig12172:1138..1238Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12172 1139..1238 +
1622927726.807917-UTR-E-fasciculatus_F_contig12172:2465..40221622927726.807917-UTR-E-fasciculatus_F_contig12172:2465..4022Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12172 2466..4022 +
1695995667.9190013-UTR-E-fasciculatus_F_contig12172:2465..40221695995667.9190013-UTR-E-fasciculatus_F_contig12172:2465..4022Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig12172 2466..4022 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927726.7943351-CDS-E-fasciculatus_F_contig12172:1238..24651622927726.7943351-CDS-E-fasciculatus_F_contig12172:1238..2465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12172 1239..2465 +
1695995667.904363-CDS-E-fasciculatus_F_contig12172:1238..24651695995667.904363-CDS-E-fasciculatus_F_contig12172:1238..2465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig12172 1239..2465 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig12172.1689.1

>prot_E-fasciculatus_F_contig12172.1689.1 ID=prot_E-fasciculatus_F_contig12172.1689.1|Name=mRNA_E-fasciculatus_F_contig12172.1689.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=409bp
MESGNFRSGSGSGSGRGSGLGSGRGRSGSGSGSGRRSALDGLASSSFASS
HYNDVFGDSSSVESGQTPRREDRTVENYFSEQPSGRNLLHVLPHQQQGVT
TPRDDDGGGGRQSQASPGLGPYREQPSGRGLVHDPSSSDVDDDDGYGGQY
GGGGGVRGAEMSSASESEGSSAWNDTDAQSSNPPAFGGGGGGGGNYAAPQ
FTTAARSAYSSGGTVESGRHGTSPVVREVDVYDEEVSSEASMSSAGTEAA
SRVQSEMTGTYDHDTAAGGSTASFQAGGGGRGDRRTGSGTSGAPSPGQRM
LGYQQQYGSSRSSIVSRVAGAESEMGSHRLVPLQNSWQNSPGPAGGAAAG
GGIERVLSGETTDSSILEQQARDRHSSGAQQEDGDFGRVWLADRAHARQF
DDADEDRG*
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mRNA from alignment at E-fasciculatus_F_contig12172:1139..4022+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig12172.1689.1 ID=mRNA_E-fasciculatus_F_contig12172.1689.1|Name=mRNA_E-fasciculatus_F_contig12172.1689.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2884bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12172:1139..4022+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCCGCAGCGGGAGCGGTAGCGGCAGCGGCCGGCGGAGCGGTCTCGAAG
GCAGCGGCTTCCGCAGCGGCAGCGGCAGCGGCAGCGGGCGCCGGAGCGGT
ATGGAAAGCGGCAACTTCCGCAGCGGGAGCGGCAGCGGCAGCGGCCGGGG
GAGCGGTCTCGGAAGCGGCCGGGGCCGCAGCGGGAGCGGGAGCGGGAGCG
GGCGTCGGAGTGCTCTCGACGGCCTCGCCAGCAGCAGCTTCGCGTCGTCG
CACTACAACGACGTCTTCGGGGACTCTTCGTCCGTCGAGAGCGGCCAGAC
GCCGAGACGGGAGGACCGTACCGTCGAGAACTACTTCTCTGAGCAGCCGT
CCGGCCGCAACCTCCTGCACGTGCTCCCTCACCAGCAGCAGGGGGTCACG
ACTCCGCGGGACGACGACGGTGGCGGGGGCCGTCAGTCGCAGGCCAGCCC
GGGCCTCGGCCCGTACAGAGAGCAGCCGTCCGGGCGCGGCCTCGTGCACG
ACCCGAGCAGCTCCGATGTCGACGACGACGACGGCTATGGCGGGCAGTAC
GGCGGCGGCGGCGGTGTAAGGGGCGCCGAGATGTCATCCGCGTCGGAGAG
CGAGGGGTCCTCGGCGTGGAACGACACCGACGCGCAGTCGTCGAACCCCC
CGGCCTTCGGCGGTGGCGGCGGCGGCGGCGGTAACTACGCGGCGCCGCAG
TTCACGACCGCCGCAAGGTCGGCGTACTCGTCCGGGGGCACCGTGGAATC
GGGCAGACACGGCACCTCCCCCGTGGTGAGGGAGGTGGACGTTTACGACG
AGGAGGTGTCGTCGGAGGCTTCCATGTCGTCCGCGGGCACGGAGGCCGCG
TCGAGGGTGCAGAGCGAGATGACGGGCACGTACGACCACGACACGGCGGC
CGGCGGCAGCACGGCGTCCTTCCAGGCCGGCGGCGGCGGCCGGGGCGACC
GCCGCACCGGGTCCGGCACCAGCGGCGCTCCCTCCCCGGGCCAGCGCATG
CTGGGCTACCAGCAACAGTACGGCTCCTCTAGGTCCTCGATAGTGTCGAG
GGTGGCCGGGGCGGAGTCGGAGATGGGGTCTCACCGCCTGGTCCCCCTGC
AGAACAGCTGGCAGAACTCGCCGGGGCCCGCCGGGGGGGCGGCGGCGGGG
GGTGGGATAGAGAGGGTGCTGTCAGGGGAGACGACGGACTCCAGCATCCT
GGAGCAGCAGGCGAGGGACAGACACAGCAGCGGCGCCCAGCAGGAAGACG
GGGACTTTGGTAGGGTGTGGCTGGCGGATCGAGCGCACGCGAGACAGTTC
GATGATGCAGACGAGGATCGGGGTTGAAAGGGTTTTACAGTAGTAGGATT
TTTTTCTCTCTTCCGTTCTCGTTCTCGTTCCTGCCTTGACTTTTGGCTTG
AACTTGGTTTTCGGTACTTTTTTTTTTTATGGTAGTTTTAAGACATGCGA
ACAGAAGAAAAAAACCTGGCTAGAATGTGCCAGGCAGTGATCGTGTGGTG
ACGGTGACGAAGTTTGCGACGTGCTCGCTTTCAGTTCGCGGCTTTATGGT
GTAGCGTACGGGCTGGTGTTTTCAATGTTGCGGCCTTAGTTCCCGCTGAG
AAAATAGCCGTCGGTGTTATTCTCCTCTGGATTGCTCTGCCGTTCCACCT
GCAAGAGGCGGGTCGGGCAGGGGCTTTTGGGAAGAGGACCGCGTAGTCAG
TCCTTTGGTGTCAGGCCGGTATAATCATGGCCTCGTTTTGCTTGGTGTTA
TATGTCTTCTTGTCCGTGTTGAGGTCGGTCGGGTGTCGGAGCGTGCGTGC
GTTATACAGTATTCAAAAGCGTCGTCCATTAGCGTATCGACAGCAGGCAC
GCGCCGAGAAAAAAAAAGGAACACGAAACACGAGGACGTCGACGACCCTA
CGCCGTCCTGGCCCTCGTCGCGTTTTAAGTCTTGTCCGCCATTTGTGGCA
GTGTACCTCCCCTCCGTCGGTGTATTTTTATTTTTTTTCTGGTGGCATTC
GTTCGCCGTTCCTCGGTGTTGAATAAGCGAAGGCCTTGTGGGAAGGGGTA
TTAAGCACGAAGCACCATAGGAGAAGGCCCATCCGCGACTGGGCTATGAT
TAAGGTAGTCGGTGGAAGCTACCGTAGCTCGTCAGGGTGACGTATATTGT
TGTGTAGGTCCCTGCGGTGGTTGTTTGCTGTCTGTCCCTTGTCCTTGCGG
GCGCCTGGAGCGGCGTGGGTTCTTGTCTAGATTGTGTTGCGGTGTGGGGA
CGAAGGGAGCTAGGATGGGAGCCAGGCACCTTGGGAAAGCGCTCAATAAT
GGCAGCGAGAGAGAGAGAGAGAGGAAAAGAGAAGAGCTTTGCAACCCTTT
TTGGTGCGTGTTTTTTCGTGAAAATGTGTTGGTTGTGTTTGGGGGGTCGG
GGTTGTGTTTTTGTGTCCAAGTATGGACGAAAAGACACCAAGTGGGTACA
GACGAAGACAGGCAGGCGTGTCATGTTGTTGTAGAAGGGGGAGGCATGCG
TGGGTACGCGTTTCGGCTCCGTTTGGATAGCGATATGGCTTAGGTGCGCA
CGACGTGTTTTTTTTGTGTTTCTTATTCCCCCTCCCCCCGCCGACCACAG
ATAAATGAAGCCTCCGCCCGCGCCCTTTGGTAGCCAGCCCCGTTTGTTGG
GTGTGTCTCTCCTTGTACTCTAATTTTCGCCCAGGGGTCGGTCGCCGGTG
AGCGGGTTTGGATGAAATTTGACGATCGACGCAAAGGTGTTTTTATCACC
TTCATTTGGTATTGGGTGGGTATGCATACATACACCCGTTGACCCTCGCC
CCCTTTTCCCGCCCCACACCCCTTGGAGGTCAAATCTTGCTTGTCTAATG
ACTTGCGTAAAGGGGGCGCACGCTCTTGCGGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig12172:1139..4022+

>mRNA_E-fasciculatus_F_contig12172.1689.1 ID=mRNA_E-fasciculatus_F_contig12172.1689.1|Name=mRNA_E-fasciculatus_F_contig12172.1689.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2454bp|location=Sequence derived from alignment at E-fasciculatus_F_contig12172:1139..4022+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAAAGCGGCAACTTCCGCAGCGGGAGCGGCAGCGGCAGCGGCCGGGG
GAGCGGTCTCGGAAGCGGCCGGGGCCGCAGCGGGAGCGGGAGCGGGAGCG
GGCGTCGGAGTGCTCTCGACGGCCTCGCCAGCAGCAGCTTCGCGTCGTCG
CACTACAACGACGTCTTCGGGGACTCTTCGTCCGTCGAGAGCGGCCAGAC
GCCGAGACGGGAGGACCGTACCGTCGAGAACTACTTCTCTGAGCAGCCGT
CCGGCCGCAACCTCCTGCACGTGCTCCCTCACCAGCAGCAGGGGGTCACG
ACTCCGCGGGACGACGACGGTGGCGGGGGCCGTCAGTCGCAGGCCAGCCC
GGGCCTCGGCCCGTACAGAGAGCAGCCGTCCGGGCGCGGCCTCGTGCACG
ACCCGAGCAGCTCCGATGTCGACGACGACGACGGCTATGGCGGGCAGTAC
GGCGGCGGCGGCGGTGTAAGGGGCGCCGAGATGTCATCCGCGTCGGAGAG
CGAGGGGTCCTCGGCGTGGAACGACACCGACGCGCAGTCGTCGAACCCCC
CGGCCTTCGGCGGTGGCGGCGGCGGCGGCGGTAACTACGCGGCGCCGCAG
TTCACGACCGCCGCAAGGTCGGCGTACTCGTCCGGGGGCACCGTGGAATC
GGGCAGACACGGCACCTCCCCCGTGGTGAGGGAGGTGGACGTTTACGACG
AGGAGGTGTCGTCGGAGGCTTCCATGTCGTCCGCGGGCACGGAGGCCGCG
TCGAGGGTGCAGAGCGAGATGACGGGCACGTACGACCACGACACGGCGGC
CGGCGGCAGCACGGCGTCCTTCCAGGCCGGCGGCGGCGGCCGGGGCGACC
GCCGCACCGGGTCCGGCACCAGCGGCGCTCCCTCCCCGGGCCAGCGCATG
CTGGGCTACCAGCAACAGTACGGCTCCTCTAGGTCCTCGATAGTGTCGAG
GGTGGCCGGGGCGGAGTCGGAGATGGGGTCTCACCGCCTGGTCCCCCTGC
AGAACAGCTGGCAGAACTCGCCGGGGCCCGCCGGGGGGGCGGCGGCGGGG
GGTGGGATAGAGAGGGTGCTGTCAGGGGAGACGACGGACTCCAGCATCCT
GGAGCAGCAGGCGAGGGACAGACACAGCAGCGGCGCCCAGCAGGAAGACG
GGGACTTTGGTAGGGTGTGGCTGGCGGATCGAGCGCACGCGAGACAGTTC
GATGATGCAGACGAGGATCGGGGTTGAATGGAAAGCGGCAACTTCCGCAG
CGGGAGCGGCAGCGGCAGCGGCCGGGGGAGCGGTCTCGGAAGCGGCCGGG
GCCGCAGCGGGAGCGGGAGCGGGAGCGGGCGTCGGAGTGCTCTCGACGGC
CTCGCCAGCAGCAGCTTCGCGTCGTCGCACTACAACGACGTCTTCGGGGA
CTCTTCGTCCGTCGAGAGCGGCCAGACGCCGAGACGGGAGGACCGTACCG
TCGAGAACTACTTCTCTGAGCAGCCGTCCGGCCGCAACCTCCTGCACGTG
CTCCCTCACCAGCAGCAGGGGGTCACGACTCCGCGGGACGACGACGGTGG
CGGGGGCCGTCAGTCGCAGGCCAGCCCGGGCCTCGGCCCGTACAGAGAGC
AGCCGTCCGGGCGCGGCCTCGTGCACGACCCGAGCAGCTCCGATGTCGAC
GACGACGACGGCTATGGCGGGCAGTACGGCGGCGGCGGCGGTGTAAGGGG
CGCCGAGATGTCATCCGCGTCGGAGAGCGAGGGGTCCTCGGCGTGGAACG
ACACCGACGCGCAGTCGTCGAACCCCCCGGCCTTCGGCGGTGGCGGCGGC
GGCGGCGGTAACTACGCGGCGCCGCAGTTCACGACCGCCGCAAGGTCGGC
GTACTCGTCCGGGGGCACCGTGGAATCGGGCAGACACGGCACCTCCCCCG
TGGTGAGGGAGGTGGACGTTTACGACGAGGAGGTGTCGTCGGAGGCTTCC
ATGTCGTCCGCGGGCACGGAGGCCGCGTCGAGGGTGCAGAGCGAGATGAC
GGGCACGTACGACCACGACACGGCGGCCGGCGGCAGCACGGCGTCCTTCC
AGGCCGGCGGCGGCGGCCGGGGCGACCGCCGCACCGGGTCCGGCACCAGC
GGCGCTCCCTCCCCGGGCCAGCGCATGCTGGGCTACCAGCAACAGTACGG
CTCCTCTAGGTCCTCGATAGTGTCGAGGGTGGCCGGGGCGGAGTCGGAGA
TGGGGTCTCACCGCCTGGTCCCCCTGCAGAACAGCTGGCAGAACTCGCCG
GGGCCCGCCGGGGGGGCGGCGGCGGGGGGTGGGATAGAGAGGGTGCTGTC
AGGGGAGACGACGGACTCCAGCATCCTGGAGCAGCAGGCGAGGGACAGAC
ACAGCAGCGGCGCCCAGCAGGAAGACGGGGACTTTGGTAGGGTGTGGCTG
GCGGATCGAGCGCACGCGAGACAGTTCGATGATGCAGACGAGGATCGGGG
TTGA
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